AT4G15670

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016500
Physical Location & Seq
Forward (+)
8929031 .. 8929813
783 bp
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UTR
Exon/CDS
Intron
AT4G15670.1

Sequence Viewer

Length: 309 bp
ATGGAGAAGCTACAGAAGATGACCTCGGAGAAGTCGTTAGTGATATTTAGCAAAAACTCATGCTGCATGTCGCACACAATCAAGACTCTCTTCTTAGACCTTGGCGTAAATCCGACGATTTATGAGCTAGATGAGATCAACAGAGGAAAAGAGATAGAGCAAGCATTGGCTCAGCTTGGCTGCAGCCCGACCGTGCCAGTGGTGTTCATAGGAGGGCAGCTTGTCGGTGGAGCCAATCAAGTCATGAGTCTCCATCTCAACCGTTCTCTCATTCCAATGCTTAAACGCGTTGGGGCGTTATGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.24

Weight (kDa)

8.54

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 4.9e-14 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15670 AT4G15680 AT4G15690
fragaria_vesca FvH4_2g24950
malus_domestica MD03G1278300.v1.1 MD11G1300300.v1.1
prunus_persica Prupe.8G254500_v2.0.a1
pyrus_communis pycom03g22170 pycom11g26370
rosa_chinensis RchiOBHm_Chr6g0292891
rosa_roxburghii Rroxscaffold_7G00174610
rosa_rugosa Rorug06G0230600
rosa_samantha Rh6CG358100
rosa_wichuraiana Rw6G030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AflIII ACRYGT 1 cut(s) 286
AluBI AGCT 4 cut(s) 10, 127, 175, 220
AluI AGCT 4 cut(s) 10, 127, 175, 220
Alw26I GTCTC 1 cut(s) 254
ApeKI GCWGC 4 cut(s) 63, 180, 183, 217
BbvI GCAGC 4 cut(s) 50, 167, 195, 229
BccI CCATC 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 2 cut(s) 11, 181
BisI GCNGC 4 cut(s) 64, 181, 184, 218
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 4 cut(s) 65, 182, 185, 219
BmiI GGNNCC 1 cut(s) 232
Bpu1102I GCTNAGC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 24, 100
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse1I ACTGG 1 cut(s) 197
BseDI CCNNGG 2 cut(s) 24, 100
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 197
BseXI GCAGC 4 cut(s) 50, 167, 195, 229
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 135
Bsp1720I GCTNAGC 1 cut(s) 171
BspCNI CTCAG 1 cut(s) 184
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 185
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 24, 100
BssMI GATC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 193, 263
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 94, 171
BstFNI CGCG 1 cut(s) 288
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 1 cut(s) 135
BstMCI CGRYCG 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 70
BstSFI CTRYAG 2 cut(s) 11, 181
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 4 cut(s) 50, 167, 195, 229
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 243
CviAII CATG 3 cut(s) 60, 67, 244
CviJI RGCY 9 cut(s) 10, 127, 170, 175, 180, 186, 220, 233, 304
CviKI_1 RGCY 9 cut(s) 10, 127, 170, 175, 180, 186, 220, 233, 304
DdeI CTNAG 2 cut(s) 94, 171
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 3 cut(s) 63, 70, 247
FaiI YATR 6 cut(s) 61, 68, 123, 209, 245, 301
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 3 cut(s) 59, 66, 243
Fnu4HI GCNGC 4 cut(s) 64, 181, 184, 218
Fsp4HI GCNGC 4 cut(s) 64, 181, 184, 218
FspBI CTAG 1 cut(s) 128
GluI GCNGC 4 cut(s) 64, 181, 184, 218
Hin1II CATG 3 cut(s) 63, 70, 247
HinfI GANTC 2 cut(s) 85, 247
Hpy188I TCNGA 2 cut(s) 28, 114
Hpy188III TCNNGA 2 cut(s) 82, 244
Hpy99I CGWCG 1 cut(s) 118
HpyCH4III ACNGT 2 cut(s) 193, 263
HpyCH4V TGCA 2 cut(s) 66, 183
HpyF3I CTNAG 2 cut(s) 94, 171
Hsp92II CATG 3 cut(s) 63, 70, 247
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 1 cut(s) 210
Lsp1109I GCAGC 4 cut(s) 50, 167, 195, 229
MaeI CTAG 1 cut(s) 128
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 2 cut(s) 28, 82
MluI ACGCGT 1 cut(s) 286
MlyI GAGTC 2 cut(s) 79, 256
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 3 cut(s) 34, 137, 206
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 275
MvnI CGCG 1 cut(s) 288
NdeII GATC 1 cut(s) 135
NlaIII CATG 3 cut(s) 63, 70, 247
NlaIV GGNNCC 1 cut(s) 232
NspI RCATGY 1 cut(s) 70
PagI TCATGA 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PkrI GCNGC 4 cut(s) 65, 182, 185, 219
PleI GAGTC 2 cut(s) 79, 255
PpsI GAGTC 2 cut(s) 79, 255
PspN4I GGNNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 4 cut(s) 64, 181, 184, 218
Sau3AI GATC 1 cut(s) 135
SchI GAGTC 2 cut(s) 79, 256
SetI ASST 6 cut(s) 12, 26, 102, 129, 177, 222
SfcI CTRYAG 2 cut(s) 11, 181
SmiMI CAYNNNNRTG 1 cut(s) 275
SspMI CTAG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 193, 263
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 204
TseI GCWGC 4 cut(s) 63, 180, 183, 217
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 1 cut(s) 204
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.