Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0016500

Physical Location & Seq

Genomic Coordinates Forward (+)

21749958 .. 21750746

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G254500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGACATGGTGGCAGGATTGGTGGATGAGAAGCCATTGGTGATCTTCAGCAAGAGTTCATGTTGCATGAGTCACTCAACAAAGTCATTCCTACGTGGGTTTGGGGCAAACCCTACAGTTTACGAGCTGGATCAAATGCCGAACGGGCAGCAAATCGAGAGGGCGCTGCTGCAGCGGGGTTGCAGGCCAAGTGTACCAGCTGTGTTCATAGGCCAAGAGTTGGTGGGAGGTACGAACACAGTCATGAGTCTCCATGTACAGAACAGGCTTGTCCCTTTGCTAATGAGAGCTAAAGCTATTTGGATTTGGAACGATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

107

Amino Acids

11.8

Weight (kDa)

9.02

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15670 AT4G15680 AT4G15690
fragaria_vesca	FvH4_2g24950
malus_domestica	MD03G1278300.v1.1 MD11G1300300.v1.1
prunus_persica	Prupe.8G254500_v2.0.a1
pyrus_communis	pycom03g22170 pycom11g26370
rosa_chinensis	RchiOBHm_Chr6g0292891
rosa_roxburghii	Rroxscaffold_7G00174610
rosa_rugosa	Rorug06G0230600
rosa_samantha	Rh6CG358100
rosa_wichuraiana	Rw6G030000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	31
AfaI	GTAC	3 cut(s)	195, 232, 258
AfiI	CCNNNNNNNGG	1 cut(s)	220
AluBI	AGCT	4 cut(s)	127, 200, 290, 296
AluI	AGCT	4 cut(s)	127, 200, 290, 296
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	185, 211
ApeKI	GCWGC	4 cut(s)	148, 166, 169, 172
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	52
BbvI	GCAGC	4 cut(s)	153, 156, 160, 184
BcoDI	GTCTC	1 cut(s)	254
BfmI	CTRYAG	2 cut(s)	114, 170
BfoI	RGCGCY	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	149, 167, 170, 173
BlsI	GCNGC	4 cut(s)	150, 168, 171, 174
Bsa29I	ATCGAT	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseCI	ATCGAT	1 cut(s)	316
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseXI	GCAGC	4 cut(s)	153, 156, 160, 184
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	187, 213
BshVI	ATCGAT	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	187, 213
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	42, 130, 313
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	2 cut(s)	187, 213
BspDI	ATCGAT	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	256
BssMI	GATC	3 cut(s)	42, 130, 313
Bst4CI	ACNGT	2 cut(s)	118, 241
BstAUI	TGTACA	1 cut(s)	256
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	31
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	45, 133, 316
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	42, 130, 313
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 172
BstSFI	CTRYAG	2 cut(s)	114, 170
BstV1I	GCAGC	4 cut(s)	153, 156, 160, 184
Bsu15I	ATCGAT	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	187, 213
BsuTUI	ATCGAT	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	185
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	166
ClaI	ATCGAT	1 cut(s)	316
Csp6I	GTAC	3 cut(s)	194, 231, 257
CviAII	CATG	5 cut(s)	7, 60, 67, 244, 254
CviJI	RGCY	8 cut(s)	34, 127, 187, 200, 213, 268, 290, 296
CviKI_1	RGCY	8 cut(s)	34, 127, 187, 200, 213, 268, 290, 296
CviQI	GTAC	3 cut(s)	194, 231, 257
DpnI	GATC	3 cut(s)	44, 132, 315
DpnII	GATC	3 cut(s)	42, 130, 313
Eco57I	CTGAAG	1 cut(s)	31
FaeI	CATG	5 cut(s)	10, 63, 70, 247, 257
FaiI	YATR	6 cut(s)	8, 61, 68, 209, 245, 255
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	5 cut(s)	6, 59, 66, 243, 253
FauI	CCCGC	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	149, 167, 170, 173
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	149, 167, 170, 173
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	4 cut(s)	149, 167, 170, 173
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	2 cut(s)	187, 213
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	5 cut(s)	10, 63, 70, 247, 257
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	2 cut(s)	70, 247
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	121, 194
Hpy188III	TCNNGA	2 cut(s)	157, 244
Hpy8I	GTNNAC	2 cut(s)	121, 194
HpyCH4III	ACNGT	2 cut(s)	118, 241
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	66, 172, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 172
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	5 cut(s)	10, 63, 70, 247, 257
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	3 cut(s)	42, 130, 313
LpnPI	CCDG	4 cut(s)	113, 169, 210, 250
Lsp1109I	GCAGC	4 cut(s)	153, 156, 160, 184
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	3 cut(s)	44, 132, 315
MboI	GATC	3 cut(s)	42, 130, 313
MboII	GAAGA	1 cut(s)	37
MlyI	GAGTC	2 cut(s)	79, 256
MnlI	CCTC	2 cut(s)	153, 221
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	175, 200
MwoI	GCNNNNNNNGC	2 cut(s)	145, 172
NdeII	GATC	3 cut(s)	42, 130, 313
NlaIII	CATG	5 cut(s)	10, 63, 70, 247, 257
NmuCI	GTSAC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	150, 168, 171, 174
Ple19I	CGATCG	1 cut(s)	316
PleI	GAGTC	2 cut(s)	78, 255
PpsI	GAGTC	2 cut(s)	78, 255
Ppu21I	YACGTR	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	174
PvuI	CGATCG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	3 cut(s)	195, 232, 258
RsaNI	GTAC	3 cut(s)	194, 231, 257
RseI	CAYNNNNRTG	1 cut(s)	242
SatI	GCNGC	4 cut(s)	149, 167, 170, 173
Sau3AI	GATC	3 cut(s)	42, 130, 313
SchI	GAGTC	2 cut(s)	79, 256
SetI	ASST	6 cut(s)	97, 129, 202, 232, 292, 298
SfcI	CTRYAG	2 cut(s)	114, 170
SmiMI	CAYNNNNRTG	1 cut(s)	242
SsiI	CCGC	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	118, 241
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	156, 316
TatI	WGTACW	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	4 cut(s)	148, 166, 169, 172
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	2 cut(s)	48, 196
Van91I	CCANNNNNTGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.