RchiOBHm_Chr6g0292891

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016500
Physical Location & Seq
Forward (+)
55705249 .. 55705683
435 bp
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UTR
Exon/CDS
Intron
PRQ26282

Sequence Viewer

Length: 435 bp
ATGAACATCATCAACCAAAAACCTTTAGTTCACTTAATTACTTCACTAGCTCTACAAATACTAGTATACTACTGCTTACTACAAACTTCTAAGTATTCTCTCAGCTCCAAGTTAGAGATGGACATGGTGGCAAGGTTGGTGGACGAGAAGCCGTTGGTGATCTTTAGCAAGAGTTCGTGCTGCATGAGTCACTCGATAAAGACATTATTGTACGACTTTGGGGCAAACCCTACGGTGTACGAGCTCGATCAAATGCCGAACGGGCAGCAGATCGAAAGGGCGCTGCTGCAGCTCGGGTGCAGGCCGAGTGTACCTGCTGTATTCATAGGGCAACAGTTTATCGGTGGTACGAATACGGTGATGAGTCTCCATATGCAGAATAAGCTTGTGCCGTTGCTCATGAGGGCAAAAGCTATATGGATTTGGAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

144

Amino Acids

16.27

Weight (kDa)

8.96

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 53 - 114 8.6e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15670 AT4G15680 AT4G15690
fragaria_vesca FvH4_2g24950
malus_domestica MD03G1278300.v1.1 MD11G1300300.v1.1
prunus_persica Prupe.8G254500_v2.0.a1
pyrus_communis pycom03g22170 pycom11g26370
rosa_chinensis RchiOBHm_Chr6g0292891
rosa_roxburghii Rroxscaffold_7G00174610
rosa_rugosa Rorug06G0230600
rosa_samantha Rh6CG358100
rosa_wichuraiana Rw6G030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccI GTMKAC 1 cut(s) 66
AfaI GTAC 4 cut(s) 212, 239, 312, 349
AhlI ACTAGT 1 cut(s) 61
AluBI AGCT 6 cut(s) 50, 105, 244, 292, 385, 413
AluI AGCT 6 cut(s) 50, 105, 244, 292, 385, 413
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 5 cut(s) 180, 265, 283, 286, 289
AspLEI GCGC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 169, 370
AvaI CYCGRG 1 cut(s) 293
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 5 cut(s) 167, 270, 273, 277, 301
BccI CCATC 1 cut(s) 112
BceAI ACGGC 2 cut(s) 136, 376
BcoDI GTCTC 1 cut(s) 371
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 3 cut(s) 47, 62, 433
BfmI CTRYAG 1 cut(s) 287
BfoI RGCGCY 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 262
BisI GCNGC 5 cut(s) 181, 266, 284, 287, 290
BlsI GCNGC 5 cut(s) 182, 267, 285, 288, 291
BmeT110I CYCGRG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 115
BseXI GCAGC 5 cut(s) 167, 270, 273, 277, 301
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 159, 247, 270
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 114
BspHI TCATGA 1 cut(s) 399
BspMAI CTGCAG 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 322
BssMI GATC 3 cut(s) 159, 247, 270
BssNAI GTATAC 1 cut(s) 67
Bst1107I GTATAC 1 cut(s) 67
Bst4CI ACNGT 3 cut(s) 235, 336, 358
BstC8I GCNNGC 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 90, 101
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 3 cut(s) 162, 250, 273
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 159, 247, 270
BstMWI GCNNNNNNNGC 3 cut(s) 262, 289, 382
BstSFI CTRYAG 1 cut(s) 287
BstV1I GCAGC 5 cut(s) 167, 270, 273, 277, 301
BstZ17I GTATAC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 304
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 1 cut(s) 302
CciI TCATGA 1 cut(s) 399
CfoI GCGC 1 cut(s) 283
Csp6I GTAC 4 cut(s) 211, 238, 311, 348
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 3 cut(s) 124, 184, 400
CviJI RGCY 8 cut(s) 50, 105, 151, 244, 292, 304, 385, 413
CviKI_1 RGCY 8 cut(s) 50, 105, 151, 244, 292, 304, 385, 413
CviQI GTAC 4 cut(s) 211, 238, 311, 348
DdeI CTNAG 2 cut(s) 90, 101
DpnI GATC 3 cut(s) 161, 249, 272
DpnII GATC 3 cut(s) 159, 247, 270
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 3 cut(s) 127, 187, 403
FaiI YATR 9 cut(s) 67, 125, 185, 326, 372, 374, 401, 416, 418
FatI CATG 3 cut(s) 123, 183, 399
FauNDI CATATG 1 cut(s) 372
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 5 cut(s) 181, 266, 284, 287, 290
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 5 cut(s) 181, 266, 284, 287, 290
FspBI CTAG 3 cut(s) 47, 62, 433
GlaI GCGC 1 cut(s) 282
GluI GCNGC 5 cut(s) 181, 266, 284, 287, 290
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 1 cut(s) 304
HhaI GCGC 1 cut(s) 283
Hin1II CATG 3 cut(s) 127, 187, 403
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 2 cut(s) 187, 364
HphI GGTGA 2 cut(s) 169, 370
Hpy166II GTNNAC 5 cut(s) 31, 67, 142, 238, 311
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 5 cut(s) 31, 67, 142, 238, 311
HpyCH4III ACNGT 3 cut(s) 235, 336, 358
HpyCH4V TGCA 4 cut(s) 183, 289, 300, 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 262, 289, 382
HpyF3I CTNAG 2 cut(s) 90, 101
Hsp92II CATG 3 cut(s) 127, 187, 403
HspAI GCGC 1 cut(s) 281
Kzo9I GATC 3 cut(s) 159, 247, 270
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 2 cut(s) 286, 327
Lsp1109I GCAGC 5 cut(s) 167, 270, 273, 277, 301
MaeI CTAG 3 cut(s) 47, 62, 433
MaeIII GTNAC 1 cut(s) 188
MalI GATC 3 cut(s) 161, 249, 272
MboI GATC 3 cut(s) 159, 247, 270
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 1 cut(s) 36
MlyI GAGTC 2 cut(s) 196, 373
MnlI CCTC 1 cut(s) 396
MseI TTAA 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 262, 289, 382
NdeI CATATG 1 cut(s) 372
NdeII GATC 3 cut(s) 159, 247, 270
NlaIII CATG 3 cut(s) 127, 187, 403
NmeAIII GCCGAG 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 188
PagI TCATGA 1 cut(s) 399
PkrI GCNGC 5 cut(s) 182, 267, 285, 288, 291
PleI GAGTC 2 cut(s) 195, 372
PpsI GAGTC 2 cut(s) 195, 372
Psp124BI GAGCTC 1 cut(s) 246
PstI CTGCAG 1 cut(s) 291
RsaI GTAC 4 cut(s) 212, 239, 312, 349
RsaNI GTAC 4 cut(s) 211, 238, 311, 348
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 5 cut(s) 181, 266, 284, 287, 290
Sau3AI GATC 3 cut(s) 159, 247, 270
SchI GAGTC 2 cut(s) 196, 373
SduI GDGCHC 1 cut(s) 246
SetI ASST 9 cut(s) 25, 52, 107, 137, 246, 294, 316, 387, 415
SfcI CTRYAG 1 cut(s) 287
SpeI ACTAGT 1 cut(s) 61
Sse9I AATT 1 cut(s) 36
SspMI CTAG 3 cut(s) 47, 62, 433
SstI GAGCTC 1 cut(s) 246
TaaI ACNGT 3 cut(s) 235, 336, 358
TaqI TCGA 3 cut(s) 194, 246, 273
TasI AATT 1 cut(s) 36
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 5 cut(s) 180, 265, 283, 286, 289
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 17, 313
XcmI CCANNNNNNNNNTGG 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 3 cut(s) 47, 62, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.