pycom03g22170

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0016500
Physical Location & Seq
Forward (+)
22335632 .. 22335952
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g22170.1

Sequence Viewer

Length: 321 bp
ATGGACACAGTAGCGAGATTGGTGGATGAGAAGCCATTGGTGATCTTCAGCAAGAGTTCTTGTTGCATGAGTCACTCTACGAAGTCATTCCTACGTGGTTTTGGAGCAAACCCTACAATTTACGAGCTGGATCAAATGCCGAACGGGCAGCAGATCGAAAGAGCACTGCTGCAGCTCGGTTGTCGGCCAAGTGTACCTGCTGTGTTCATAGGGCAGCAGTTCGTCGGCGGTAATAATACAGTCATGGGTCTCCATGTACAGAATAAGCTTGTCCCTCTCCTCATGAGAGCCAAAGCTATTTGGATTTGGAACGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

107

Amino Acids

11.82

Weight (kDa)

9.26

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 1.1e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15670 AT4G15680 AT4G15690
fragaria_vesca FvH4_2g24950
malus_domestica MD03G1278300.v1.1 MD11G1300300.v1.1
prunus_persica Prupe.8G254500_v2.0.a1
pyrus_communis pycom03g22170 pycom11g26370
rosa_chinensis RchiOBHm_Chr6g0292891
rosa_roxburghii Rroxscaffold_7G00174610
rosa_rugosa Rorug06G0230600
rosa_samantha Rh6CG358100
rosa_wichuraiana Rw6G030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 2 cut(s) 195, 258
AluBI AGCT 4 cut(s) 127, 175, 268, 296
AluI AGCT 4 cut(s) 127, 175, 268, 296
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 138
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 148, 169, 172, 214
Asp700I GAANNNNTTC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 156, 160, 184, 226
BcoDI GTCTC 1 cut(s) 254
BfmI CTRYAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 145
BisI GCNGC 4 cut(s) 149, 170, 173, 215
BlsI GCNGC 4 cut(s) 150, 171, 174, 216
BsaAI YACGTR 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 254
BseGI GGATG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 4 cut(s) 156, 160, 184, 226
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 166
BslFI GGGAC 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 257
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 42, 130, 153
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 187
BspHI TCATGA 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 174
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 256
BssMI GATC 3 cut(s) 42, 130, 153
Bst4CI ACNGT 2 cut(s) 10, 241
BstAUI TGTACA 1 cut(s) 256
BstBAI YACGTR 1 cut(s) 95
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 3 cut(s) 45, 133, 156
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 3 cut(s) 42, 130, 153
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 4 cut(s) 156, 160, 184, 226
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 164
BveI ACCTGC 1 cut(s) 205
CciI TCATGA 1 cut(s) 282
Csp6I GTAC 2 cut(s) 194, 257
CviAII CATG 4 cut(s) 67, 244, 254, 283
CviJI RGCY 7 cut(s) 34, 127, 175, 187, 268, 290, 296
CviKI_1 RGCY 7 cut(s) 34, 127, 175, 187, 268, 290, 296
CviQI GTAC 2 cut(s) 194, 257
DpnI GATC 3 cut(s) 44, 132, 155
DpnII GATC 3 cut(s) 42, 130, 153
EaeI YGGCCR 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 31
FaeI CATG 4 cut(s) 70, 247, 257, 286
FaiI YATR 5 cut(s) 68, 209, 245, 255, 284
FaqI GGGAC 1 cut(s) 257
FatI CATG 4 cut(s) 66, 243, 253, 282
Fnu4HI GCNGC 4 cut(s) 149, 170, 173, 215
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 4 cut(s) 149, 170, 173, 215
GluI GCNGC 4 cut(s) 149, 170, 173, 215
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 4 cut(s) 70, 247, 257, 286
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 70
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 194
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 194
Hpy99I CGWCG 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 10, 241
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 66, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 4 cut(s) 70, 247, 257, 286
Kzo9I GATC 3 cut(s) 42, 130, 153
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 2 cut(s) 113, 210
Lsp1109I GCAGC 4 cut(s) 156, 160, 184, 226
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 71
MalI GATC 3 cut(s) 44, 132, 155
MboI GATC 3 cut(s) 42, 130, 153
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 117
MlyI GAGTC 1 cut(s) 79
MnlI CCTC 2 cut(s) 285, 290
MroXI GAANNNNTTC 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 145
NdeII GATC 3 cut(s) 42, 130, 153
NlaIII CATG 4 cut(s) 70, 247, 257, 286
NmuCI GTSAC 1 cut(s) 71
PagI TCATGA 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 4 cut(s) 150, 171, 174, 216
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Ppu21I YACGTR 1 cut(s) 95
PstI CTGCAG 1 cut(s) 174
RsaI GTAC 2 cut(s) 195, 258
RsaNI GTAC 2 cut(s) 194, 257
SatI GCNGC 4 cut(s) 149, 170, 173, 215
Sau3AI GATC 3 cut(s) 42, 130, 153
SchI GAGTC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 166
SetI ASST 6 cut(s) 97, 129, 177, 199, 270, 298
SfcI CTRYAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 117
SsiI CCGC 1 cut(s) 228
TaaI ACNGT 2 cut(s) 10, 241
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 117
TatI WGTACW 1 cut(s) 256
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 4 cut(s) 148, 169, 172, 214
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 196
TspRI CASTG 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.