FvH4_2g24950

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016500
Physical Location & Seq
Forward (+)
20272753 .. 20273530
778 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24950.t1

Sequence Viewer

Length: 321 bp
ATGGACATGGTAGCAAGGTTGGTGGACCAGAAGCCGTTGGTGATCTTCAGCAAGAGTTCGTGCTGCATGAGTCACTCGATAAAGACATTCTTATACGATTTTGGGGCGAATCCTACGGTGTACGAACTTGATCAAATGCCAAACGGGCAGCAGATCGAAAGGGCGCTGCTGCAGCTCGGATGCAGACCTAGTGTGCCTGCTGTGTTCATAGGGCAACAGTTTATCGGTGGTACGAACACGGTGATGAGTCTCCATATGCAGAACAAGCTCGTGCCGTTGCTCATGAGGGCAAAAGCTATATGGATCTGGAACGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

107

Amino Acids

11.97

Weight (kDa)

8.93

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 14 - 75 5.6e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016500)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15670 AT4G15680 AT4G15690
fragaria_vesca FvH4_2g24950
malus_domestica MD03G1278300.v1.1 MD11G1300300.v1.1
prunus_persica Prupe.8G254500_v2.0.a1
pyrus_communis pycom03g22170 pycom11g26370
rosa_chinensis RchiOBHm_Chr6g0292891
rosa_roxburghii Rroxscaffold_7G00174610
rosa_rugosa Rorug06G0230600
rosa_samantha Rh6CG358100
rosa_wichuraiana Rw6G030000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 2 cut(s) 122, 232
AluBI AGCT 3 cut(s) 175, 268, 296
AluI AGCT 3 cut(s) 175, 268, 296
Alw26I GTCTC 1 cut(s) 254
AlwI GGATC 1 cut(s) 311
ApeKI GCWGC 5 cut(s) 63, 148, 166, 169, 172
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 52, 253
AvaII GGWCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 269
BbvI GCAGC 5 cut(s) 50, 153, 156, 160, 184
BceAI ACGGC 2 cut(s) 19, 259
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 167
BglI GCCNNNNNGGC 1 cut(s) 145
BisI GCNGC 5 cut(s) 64, 149, 167, 170, 173
BlsI GCNGC 5 cut(s) 65, 150, 168, 171, 174
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 170
BseGI GGATG 1 cut(s) 185
BseXI GCAGC 5 cut(s) 50, 153, 156, 160, 184
BsmAI GTCTC 1 cut(s) 254
Bsp143I GATC 4 cut(s) 42, 130, 153, 303
BspHI TCATGA 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 174
BspPI GGATC 1 cut(s) 311
BssMI GATC 4 cut(s) 42, 130, 153, 303
BssSI CACGAG 1 cut(s) 269
Bst2BI CACGAG 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 118, 219, 241
BstC8I GCNNGC 1 cut(s) 198
BstF5I GGATG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 4 cut(s) 45, 133, 156, 306
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 4 cut(s) 42, 130, 153, 303
BstMWI GCNNNNNNNGC 3 cut(s) 145, 172, 265
BstSFI CTRYAG 1 cut(s) 170
BstV1I GCAGC 5 cut(s) 50, 153, 156, 160, 184
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BtsCI GGATG 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 121, 231
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 3 cut(s) 7, 67, 283
CviJI RGCY 4 cut(s) 34, 175, 268, 296
CviKI_1 RGCY 4 cut(s) 34, 175, 268, 296
CviQI GTAC 2 cut(s) 121, 231
DpnI GATC 4 cut(s) 44, 132, 155, 305
DpnII GATC 4 cut(s) 42, 130, 153, 303
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 31
FaeI CATG 3 cut(s) 10, 70, 286
FaiI YATR 9 cut(s) 8, 68, 94, 209, 255, 257, 284, 299, 301
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FatI CATG 3 cut(s) 6, 66, 282
FauNDI CATATG 1 cut(s) 255
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 5 cut(s) 64, 149, 167, 170, 173
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 5 cut(s) 64, 149, 167, 170, 173
FspBI CTAG 1 cut(s) 189
GlaI GCGC 1 cut(s) 165
GluI GCNGC 5 cut(s) 64, 149, 167, 170, 173
HaeII RGCGCY 1 cut(s) 167
HhaI GCGC 1 cut(s) 166
Hin1II CATG 3 cut(s) 10, 70, 286
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 3 cut(s) 70, 109, 247
HphI GGTGA 2 cut(s) 52, 253
Hpy166II GTNNAC 2 cut(s) 25, 121
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 2 cut(s) 283, 307
Hpy8I GTNNAC 2 cut(s) 25, 121
HpyCH4III ACNGT 3 cut(s) 118, 219, 241
HpyCH4V TGCA 4 cut(s) 66, 172, 183, 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 145, 172, 265
Hsp92II CATG 3 cut(s) 10, 70, 286
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 4 cut(s) 42, 130, 153, 303
LpnPI CCDG 3 cut(s) 41, 210, 292
Lsp1109I GCAGC 5 cut(s) 50, 153, 156, 160, 184
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 71
MalI GATC 4 cut(s) 44, 132, 155, 305
MboI GATC 4 cut(s) 42, 130, 153, 303
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 303
MlyI GAGTC 2 cut(s) 79, 256
MnlI CCTC 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 145, 172, 265
NdeI CATATG 1 cut(s) 255
NdeII GATC 4 cut(s) 42, 130, 153, 303
NlaIII CATG 3 cut(s) 10, 70, 286
NmuCI GTSAC 1 cut(s) 71
PagI TCATGA 1 cut(s) 282
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 5 cut(s) 65, 150, 168, 171, 174
PleI GAGTC 2 cut(s) 78, 255
PpsI GAGTC 2 cut(s) 78, 255
PspPI GGNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 174
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 2 cut(s) 122, 232
RsaNI GTAC 2 cut(s) 121, 231
RseI CAYNNNNRTG 1 cut(s) 242
SatI GCNGC 5 cut(s) 64, 149, 167, 170, 173
Sau3AI GATC 4 cut(s) 42, 130, 153, 303
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 2 cut(s) 79, 256
SetI ASST 5 cut(s) 20, 177, 190, 270, 298
SfaNI GCATC 1 cut(s) 170
SfcI CTRYAG 1 cut(s) 170
SinI GGWCC 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 242
SspMI CTAG 1 cut(s) 189
TaaI ACNGT 3 cut(s) 118, 219, 241
TaqI TCGA 2 cut(s) 77, 156
TfiI GAWTC 1 cut(s) 109
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 5 cut(s) 63, 148, 166, 169, 172
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 25
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.