AT4G16144

USP8 dimerisation domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9137789 .. 9141772
3984 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16144.1

Sequence Viewer

Length: 1269 bp
ATGAAGATTGATCTGAACAAGGTGGCTCGTGAAATCGAAGTGGATAATCGTATTCCTCTCCGTAATTACTACCGCATCGCCGATAATCTCCTCCGACAGGCCAGTATATATCGCGAAGAGAAGAATGTGGTGGATTTGTATATCATGCTTCTTAGATATTCAAGTTTGATTTCTGAAACAATTCCTTTCCATCGAGATTACCAGGCATCGCTTCCACAAGAAAGACTTGGGAGTAGGAAGAGGTTGCGTGCTGTAATCAATGAGCTCGAGTCTCTGAAACCGGAATTCAACCAGCTAGTGGATAAGCTGAACAGAGTTGAGGATGAATCCCGTCAGGATGGAAGTGATCTCCCGGTCGTATCATATAGTTCAGATGCTGTTGAGTGGCCTCCTGCTCACAAAGCTTCATACTCCAGACCTGATATTAACAAGCCCTTACCGACATCTCAACCATCCTGGACGTATAACAATAATCTGACTTCATCATCAAATCGTACACAGATTGATCAGCAGTTCCAGAAGCTATCTTTTGATTTCCTGCCTCCAAACCAAGCAACCTTGTCAAGACATTCATTTCTAGGTCCGAATGGTCTTAAAAGGCAAATGGTTGCACCCAAGTCAGAGATAAAGGTTCAATATCCGAGTAATACAGATTGGGGTTCTGCGGACAATTCAGGTTTAATTGAAGCTGGACCTAGCAGTTCCTCAGCATCACTTAATGGTGATTCTCAAGAAGTCTCAACACTGAACTCTGTGCTCTCCTTAGATGATGGTCGATGGCAGCGTCATTCTGAGGCAGTAAATTCCCAGTTTATTAGCGACGCAACTGAAGACCCGTTTCAGTTTGTCGGTATGAAGCAACCTTCCCCTCCTCCCGTGCTTGCTCAAGTGCATCAAGAGTTAGCCCAAATTTGCCCATCTAAAGTAGCTGATCCTAGACCAGGACCTGCAATTCCTTCCCTAGAAGGAAAAGAGGGCAGCAATTCTTATCAGCATTTGCATGTGCCTGTGCGCATAATGGATGATTTCCTAAGGCTAGCTCGGTCAAACACAGAACGGAATTTAGAAACTTGTGGAGTACTTGCTGGTTCTCTGAAAAACAGGGTTTTTCATATCACTACTCTCATAATCCCAAAGCAGGAGTCTACCTCAGATTCTTGCCAAACACTAAACGAGAAGAAATATTCGAGTACAGGACAGACTCTCTCTATTTCCCTTGGGTTGGATTCATACACACCCTACACAAACTTGCTTCATGTCATCAGTTGA

Protein Analysis

422

Amino Acids

47.35

Weight (kDa)

6.17

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
USP8_dimer PF08969 4 - 95 1.1e-13 USP8 dimerisation domain
JAB PF01398 329 - 395 3.3e-07 JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1013
Acc36I ACCTGC 1 cut(s) 955
AccB7I CCANNNNNTGG 1 cut(s) 298
AccI GTMKAC 1 cut(s) 1145
AccII CGCG 1 cut(s) 114
AciI CCGC 2 cut(s) 73, 665
AclWI GGATC 1 cut(s) 926
AcsI RAATTY 4 cut(s) 284, 802, 909, 1060
AcuI CTGAAG 1 cut(s) 849
AfaI GTAC 3 cut(s) 496, 1080, 1192
AfiI CCNNNNNNNGG 5 cut(s) 97, 298, 941, 1138, 1222
AgsI TTSAA 4 cut(s) 162, 289, 635, 686
AjnI CCWGG 3 cut(s) 201, 455, 940
AluBI AGCT 8 cut(s) 265, 295, 307, 404, 523, 689, 929, 1040
AluI AGCT 8 cut(s) 265, 295, 307, 404, 523, 689, 929, 1040
Alw21I GWGCWC 2 cut(s) 267, 759
Alw26I GTCTC 2 cut(s) 276, 742
AlwI GGATC 1 cut(s) 926
AlwNI CAGNNNCTG 2 cut(s) 377, 947
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 2 cut(s) 99, 386
ApeKI GCWGC 2 cut(s) 781, 978
ApoI RAATTY 4 cut(s) 284, 802, 909, 1060
ArsI GACNNNNNNTTYG 2 cut(s) 1127, 1159
Asp700I GAANNNNTTC 1 cut(s) 180
AspLEI GCGC 1 cut(s) 1014
AspS9I GGNCC 3 cut(s) 581, 692, 944
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 1 cut(s) 734
AsuNHI GCTAGC 1 cut(s) 1036
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 3 cut(s) 581, 692, 944
AxyI CCTNAGG 1 cut(s) 1031
BanII GRGCYC 1 cut(s) 267
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 837
Bbv12I GWGCWC 2 cut(s) 267, 759
BbvCI CCTCAGC 1 cut(s) 706
BbvI GCAGC 2 cut(s) 793, 990
BccI CCATC 6 cut(s) 198, 332, 460, 764, 771, 925
BciT130I CCWGG 3 cut(s) 203, 457, 942
BclI TGATCA 1 cut(s) 505
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 2 cut(s) 276, 742
BfaI CTAG 6 cut(s) 296, 578, 696, 936, 962, 1037
BfuAI ACCTGC 1 cut(s) 955
BisI GCNGC 2 cut(s) 782, 979
BlsI GCNGC 2 cut(s) 783, 980
BmcAI AGTACT 1 cut(s) 1080
Bme1390I CCNGG 4 cut(s) 203, 353, 457, 942
Bme18I GGWCC 3 cut(s) 581, 692, 944
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 3 cut(s) 581, 692, 944
BmrFI CCNGG 4 cut(s) 203, 353, 457, 942
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 5 cut(s) 84, 215, 364, 719, 901
BmtI GCTAGC 1 cut(s) 1040
BmuI ACTGGG 1 cut(s) 802
BpiI GAAGAC 1 cut(s) 837
BplI GAGNNNNNCTC 2 cut(s) 1133, 1165
BpmI CTGGAG 1 cut(s) 397
Bpu10I CCTNAGC 1 cut(s) 706
BpuEI CTTGAG 2 cut(s) 714, 870
BpuMI CCSGG 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 1216
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 298, 941, 1138, 1222
Bse1I ACTGG 2 cut(s) 102, 808
Bse21I CCTNAGG 1 cut(s) 1031
BseBI CCWGG 3 cut(s) 203, 457, 942
BseDI CCNNGG 1 cut(s) 1216
BseGI GGATG 4 cut(s) 328, 343, 452, 1027
BseLI CCNNNNNNNGG 5 cut(s) 97, 298, 941, 1138, 1222
BseMII CTCAG 3 cut(s) 720, 783, 1164
BseNI ACTGG 2 cut(s) 102, 808
BseRI GAGGAG 2 cut(s) 80, 861
BseXI GCAGC 2 cut(s) 793, 990
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 357
BshFI GGCC 2 cut(s) 101, 388
BsiEI CGRYCG 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 267, 759
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 281, 353
BslI CCNNNNNNNGG 5 cut(s) 97, 298, 941, 1138, 1222
BsmAI GTCTC 2 cut(s) 276, 742
BsnI GGCC 2 cut(s) 101, 388
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 267, 759
Bsp143I GATC 4 cut(s) 10, 346, 505, 931
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 2 cut(s) 73, 665
BspANI GGCC 2 cut(s) 101, 388
BspCNI CTCAG 3 cut(s) 719, 784, 1163
BspFNI CGCG 1 cut(s) 114
BspMI ACCTGC 1 cut(s) 955
BspOI GCTAGC 1 cut(s) 1040
BspPI GGATC 1 cut(s) 926
BsrI ACTGG 2 cut(s) 102, 808
BssECI CCNNGG 1 cut(s) 1216
BssMI GATC 4 cut(s) 10, 346, 505, 931
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 1216
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 3 cut(s) 203, 457, 942
Bst6I CTCTTC 2 cut(s) 111, 233
BstC8I GCNNGC 3 cut(s) 249, 882, 1038
BstDEI CTNAG 6 cut(s) 152, 706, 763, 792, 1031, 1150
BstENI CCTNNNNNAGG 2 cut(s) 95, 939
BstF5I GGATG 4 cut(s) 328, 343, 452, 1027
BstFNI CGCG 1 cut(s) 114
BstHHI GCGC 1 cut(s) 1014
BstKTI GATC 4 cut(s) 13, 349, 508, 934
BstMAI GTCTC 2 cut(s) 276, 742
BstMBI GATC 4 cut(s) 10, 346, 505, 931
BstMCI CGRYCG 1 cut(s) 357
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNI CCWGG 3 cut(s) 203, 457, 942
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 4 cut(s) 201, 351, 455, 940
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 793, 990
BstV2I GAAGAC 1 cut(s) 837
Bsu36I CCTNAGG 1 cut(s) 1031
BsuRI GGCC 2 cut(s) 101, 388
BtgZI GCGATG 2 cut(s) 61, 192
BtsCI GGATG 4 cut(s) 328, 343, 452, 1027
BtsIMutI CAGTG 1 cut(s) 743
BtuMI TCGCGA 1 cut(s) 114
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 3 cut(s) 249, 882, 1038
CaiI CAGNNNCTG 2 cut(s) 377, 947
CfoI GCGC 1 cut(s) 1014
Cfr13I GGNCC 3 cut(s) 581, 692, 944
CseI GACGC 2 cut(s) 773, 830
Csp6I GTAC 3 cut(s) 495, 1079, 1191
CviAII CATG 3 cut(s) 145, 1001, 1256
CviQI GTAC 3 cut(s) 495, 1079, 1191
DdeI CTNAG 6 cut(s) 152, 706, 763, 792, 1031, 1150
DpnI GATC 4 cut(s) 12, 348, 507, 933
DpnII GATC 4 cut(s) 10, 346, 505, 931
Eam1104I CTCTTC 2 cut(s) 111, 233
EarI CTCTTC 2 cut(s) 111, 233
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 1216
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 3 cut(s) 581, 692, 944
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 849
Eco81I CCTNAGG 1 cut(s) 1031
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 265
EcoNI CCTNNNNNAGG 2 cut(s) 95, 939
EcoO109I RGGNCCY 1 cut(s) 944
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 3 cut(s) 201, 455, 940
EcoT14I CCWWGG 1 cut(s) 1216
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 1216
FaeI CATG 3 cut(s) 148, 1004, 1259
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 3 cut(s) 144, 1000, 1255
FbaI TGATCA 1 cut(s) 505
FblI GTMKAC 1 cut(s) 1145
Fnu4HI GCNGC 2 cut(s) 782, 979
FokI GGATG 4 cut(s) 335, 350, 439, 1034
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 2 cut(s) 782, 979
FspAI RTGCGCAY 1 cut(s) 1013
FspBI CTAG 6 cut(s) 296, 578, 696, 936, 962, 1037
FspI TGCGCA 1 cut(s) 1013
GlaI GCGC 1 cut(s) 1013
GluI GCNGC 2 cut(s) 782, 979
GsuI CTGGAG 1 cut(s) 397
HaeIII GGCC 2 cut(s) 101, 388
HapII CCGG 2 cut(s) 281, 353
HgaI GACGC 2 cut(s) 773, 830
HhaI GCGC 1 cut(s) 1014
Hin1II CATG 3 cut(s) 148, 1004, 1259
Hin6I GCGC 1 cut(s) 1012
HinP1I GCGC 1 cut(s) 1012
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 7 cut(s) 269, 326, 725, 1142, 1154, 1201, 1226
HpaII CCGG 2 cut(s) 281, 353
HphI GGTGA 1 cut(s) 734
Hpy166II GTNNAC 2 cut(s) 497, 1146
Hpy188III TCNNGA 9 cut(s) 29, 113, 194, 335, 414, 517, 564, 731, 896
Hpy8I GTNNAC 2 cut(s) 497, 1146
Hpy99I CGWCG 1 cut(s) 824
HpyAV CCTTC 3 cut(s) 873, 959, 966
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 4 cut(s) 611, 892, 950, 1000
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 6 cut(s) 152, 706, 763, 792, 1031, 1150
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 3 cut(s) 148, 1004, 1259
HspAI GCGC 1 cut(s) 1012
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 4 cut(s) 10, 346, 505, 931
Lsp1109I GCAGC 2 cut(s) 793, 990
LweI GCATC 5 cut(s) 84, 215, 364, 719, 901
MaeI CTAG 6 cut(s) 296, 578, 696, 936, 962, 1037
MaeII ACGT 1 cut(s) 461
MalI GATC 4 cut(s) 12, 348, 507, 933
MboI GATC 4 cut(s) 10, 346, 505, 931
MboII GAAGA 6 cut(s) 16, 128, 133, 250, 842, 1189
MhlI GDGCHC 2 cut(s) 267, 759
MlyI GAGTC 3 cut(s) 278, 1151, 1195
MmeI TCCRAC 2 cut(s) 118, 1203
MroXI GAANNNNTTC 1 cut(s) 180
MseI TTAA 4 cut(s) 426, 594, 680, 717
MslI CAYNNNNRTG 1 cut(s) 999
MspI CCGG 2 cut(s) 281, 353
MspR9I CCNGG 4 cut(s) 203, 353, 457, 942
MvaI CCWGG 3 cut(s) 203, 457, 942
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 401
NciI CCSGG 1 cut(s) 353
NdeII GATC 4 cut(s) 10, 346, 505, 931
NheI GCTAGC 1 cut(s) 1036
NlaIII CATG 3 cut(s) 148, 1004, 1259
NruI TCGCGA 1 cut(s) 114
NsbI TGCGCA 1 cut(s) 1013
NspI RCATGY 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 180
PfeI GAWTC 4 cut(s) 326, 725, 1154, 1226
PflMI CCANNNNNTGG 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 455
PkrI GCNGC 2 cut(s) 783, 980
PleI GAGTC 3 cut(s) 277, 1150, 1195
PpsI GAGTC 3 cut(s) 277, 1150, 1195
PpuMI RGGWCCY 1 cut(s) 944
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 944
Psp6I CCWGG 3 cut(s) 201, 455, 940
PspGI CCWGG 3 cut(s) 201, 455, 940
PspPI GGNCC 3 cut(s) 581, 692, 944
PspPPI RGGWCCY 1 cut(s) 944
PspXI VCTCGAGB 1 cut(s) 266
PstNI CAGNNNCTG 2 cut(s) 377, 947
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 3 cut(s) 496, 1080, 1192
RsaNI GTAC 3 cut(s) 495, 1079, 1191
RseI CAYNNNNRTG 1 cut(s) 999
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 4 cut(s) 426, 594, 680, 717
SatI GCNGC 2 cut(s) 782, 979
Sau3AI GATC 4 cut(s) 10, 346, 505, 931
Sau96I GGNCC 3 cut(s) 581, 692, 944
ScaI AGTACT 1 cut(s) 1080
SchI GAGTC 3 cut(s) 278, 1151, 1195
ScrFI CCNGG 4 cut(s) 203, 353, 457, 942
SduI GDGCHC 2 cut(s) 267, 759
SfaNI GCATC 5 cut(s) 84, 215, 364, 719, 901
Sfr274I CTCGAG 1 cut(s) 266
SinI GGWCC 3 cut(s) 581, 692, 944
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 999
SmlI CTYRAG 3 cut(s) 266, 729, 885
SmoI CTYRAG 3 cut(s) 266, 729, 885
SsiI CCGC 2 cut(s) 73, 665
SspI AATATT 1 cut(s) 1184
SspMI CTAG 6 cut(s) 296, 578, 696, 936, 962, 1037
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 4 cut(s) 201, 351, 455, 940
StyI CCWWGG 1 cut(s) 1216
TaiI ACGT 1 cut(s) 464
TaqI TCGA 5 cut(s) 36, 193, 267, 775, 1187
TaqII GACCGA 1 cut(s) 1032
TatI WGTACW 2 cut(s) 1078, 1190
TfiI GAWTC 4 cut(s) 326, 725, 1154, 1226
Tru1I TTAA 4 cut(s) 426, 594, 680, 717
Tru9I TTAA 4 cut(s) 426, 594, 680, 717
TscAI CASTG 1 cut(s) 750
TseI GCWGC 2 cut(s) 781, 978
TspDTI ATGAA 9 cut(s) 17, 339, 396, 471, 561, 869, 1100, 1218, 1244
TspGWI ACGGA 2 cut(s) 50, 1072
TspRI CASTG 1 cut(s) 750
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 3 cut(s) 581, 692, 944
XagI CCTNNNNNAGG 2 cut(s) 95, 939
XapI RAATTY 4 cut(s) 284, 802, 909, 1060
XceI RCATGY 1 cut(s) 1004
XhoI CTCGAG 1 cut(s) 266
XmiI GTMKAC 1 cut(s) 1145
XmnI GAANNNNTTC 1 cut(s) 180
XspI CTAG 6 cut(s) 296, 578, 696, 936, 962, 1037
ZrmI AGTACT 1 cut(s) 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.