Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009296

Physical Location & Seq

Genomic Coordinates Forward (+)

17403280 .. 17407204

Gene Structure 3925 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007483

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGAAGATCAACGTCAATCAAATGACTCGCCGAGTCGAGGTCGACAATCGCTACCCTCTCCGATTCTACTACCGCATCGCCGATAATCTCCTCAAACAGGCTAGTATATACCGTGAGGAGAAGAACATTATAGAGTTGTATGTCATACTTGTCCGATTTTCGAGTTTGGTGTCTGAAACTATACCATGTCATCGAGACTATCAGGCGATTCTACCAAAAGAGAGGAGTCTATATAAGAAGAAACTGTTGAGTGTACTGGATGAGCTCGAGTCTTTGAAGCCAGAATTCCAACGCCGTGTCAGTGAACATAATGAGGCCGCTGCAGTTTGTCAGCTGCCTGAACTTGAAAGCACTTCATATGGCTTGCAGACGTCTTCTTTAGAATGGCCTCCGGTGAACAATAAATCATTGAGCATGAATGTTAGGCAGCCTGCTAGCCTGACATCTCAGTCGTCATGGAAGTACAAAAATGATTTTTCACGGGGTTCAACAAGTACTGTACAAATTGACAAGCAGTTCCAGAATCTATCTTTTAATCTACCTCTTCCAAATAAAGAGACCTTGTCTAGACACTCATTTTTGGGTCCAAATGGTCTTCAGGGTCAGTGGCGAGGACCCAGCGCAAAATTTAAGGTTCAATATCCAAGCGGCACTGACTTAATCCCTAGTGAAAATTCAGGCCTCAATCAGGCTGTACAATATGATCTTGTGGGAGTAAAAGAAGGTGATCCAGGTGGGGTGAATTCTACCATGGAATCAGTGCTCTCGTTGGACAATGGTGATTGGCTACGCCCTGCTCAGGAATCATGTCCTTCATGGATTAGTGAAGCAAAGGAAGATCCTTTTCCATTGGTCAAACAACCCTCTCCTCCTCCTGTTCTTGCTCGAGTGCAGCAGGAAATGGCTCCAATTCATCCTTCAAAAGTGGCAGATCCAAGACCAGGGCCTGCAAGTCCATCTCAGGATGGGATGCCAAGTTCTAATTCATATCAGCATTTACACGTTCCAATAAAAATGATGGAAGATTTCTTAAGATTGGCTCGGAAAAATACAGAAAAAAACTTAGAAACATGCGGTGTTCTTGCTGGTTCATTGAAAAACAAGGTTTTTCATATCACTACGCTAATAATCCCAAAGCAGGAGTCAACTTCTGATTCGTGTCAAACATTGAATGAGGAAGAAATATTTGAAGTTCAAGACAGACTATCTCTTTTTCCTCTTGGGTGGATTCATACACACCCATCACAGACCTGTTTCATGTCATCAGTTGATCTGCACACTCATTACTCATACCAGATTATGTTACCAGAAGCAATTGCAATTGTTATGGCTCCAACAGACACATCCAGTCCACATGGCATATTTCACTTATCTGACCCAGGTGGTGTATCCGTTATTCGTAACTGTCAACAGCGTGGATTTCATCCTCATGAGGAGCCTTCAGATGGAACCTCAATATATGAGCATTGTTCTCATGTGTATATTAATTCTAATTTGAAGATCGATGTTGTTGATCTGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006464 GO:0006508 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009987 GO:0010638 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0016579 GO:0019538 GO:0031224 GO:0031410 GO:0031982 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033043 GO:0033157 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0044088 GO:0044090 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070201 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0071840 GO:0090087 GO:0090316 GO:0097708 GO:0098657 GO:1901564 GO:1903827 GO:1903829 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB USP8_dimer

Protein Analysis

508

Amino Acids

57.15

Weight (kDa)

6.2

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
USP8_dimer	PF08969	6 - 99	2.1e-13	USP8 dimerisation domain
JAB	PF01398	329 - 437	6.3e-19	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Prok-JAB	PF14464	346 - 429	6.5e-06	Prokaryotic homologs of the JAB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16144
fragaria_vesca	FvH4_4g19320 FvH4_4g19320 FvH4_4g19320
malus_domestica	MD13G1157700.v1.1 MD16G1158700.v1.1
prunus_persica	Prupe.1G125200_v2.0.a1
pyrus_communis	pycom13g13500 pycom16g13350
rosa_chinensis	RchiOBHm_Chr4g0424341
rosa_laevigata	RLG00000007483
rosa_multiflora	Rmu_sc0005995.1_g000011
rosa_roxburghii	Rroxscaffold_5G00366290
rosa_rugosa	Rorug04G0196100 Rorug04G0196200 Rorug04G0196300 Rorug04G0196400
rosa_samantha	Rh4AG252900 Rh4BG258300 Rh4CG269300 Rh4DG252700
rosa_wichuraiana	Rw4G021810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	448
AatII	GACGTC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	5 cut(s)	73, 318, 648, 1074, 1519
AclWI	GGATC	3 cut(s)	722, 833, 926
AcsI	RAATTY	4 cut(s)	284, 626, 673, 742
AcuI	CTGAAG	2 cut(s)	581, 1425
AcyI	GRCGYC	1 cut(s)	371
AfaI	GTAC	5 cut(s)	255, 464, 496, 501, 696
AfiI	CCNNNNNNNGG	7 cut(s)	37, 97, 688, 799, 941, 1138, 1445
AflII	CTTAAG	1 cut(s)	1030
AflIII	ACRYGT	1 cut(s)	1000
AjnI	CCWGG	3 cut(s)	730, 940, 1378
AjuI	GAANNNNNNNTTGG	4 cut(s)	901, 933, 967, 999
AloI	GAACNNNNNNTCC	2 cut(s)	961, 993
AluBI	AGCT	2 cut(s)	265, 334
AluI	AGCT	2 cut(s)	265, 334
Alw21I	GWGCWC	2 cut(s)	267, 765
Alw26I	GTCTC	2 cut(s)	189, 551
AlwI	GGATC	3 cut(s)	722, 833, 926
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	2 cut(s)	266, 885
AoxI	GGCC	4 cut(s)	315, 386, 679, 944
ApeKI	GCWGC	4 cut(s)	320, 334, 427, 892
ApoI	RAATTY	4 cut(s)	284, 626, 673, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	1127, 1159
AseI	ATTAAT	1 cut(s)	1485
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	3 cut(s)	584, 614, 944
AsuHPI	GGTGA	4 cut(s)	406, 737, 751, 791
AsuNHI	GCTAGC	1 cut(s)	434
AvaI	CYCGRG	2 cut(s)	266, 885
AvaII	GGWCC	2 cut(s)	584, 614
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	2 cut(s)	366, 587
Bbv12I	GWGCWC	2 cut(s)	267, 765
BbvI	GCAGC	4 cut(s)	307, 321, 439, 904
BccI	CCATC	5 cut(s)	959, 964, 1012, 1249, 1439
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	3 cut(s)	732, 942, 1380
BciVI	GTATCC	1 cut(s)	1399
BcoDI	GTCTC	2 cut(s)	189, 551
BfaI	CTAG	4 cut(s)	102, 435, 567, 666
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	1030
BfuI	GTATCC	1 cut(s)	1399
BisI	GCNGC	6 cut(s)	318, 321, 335, 428, 649, 893
BlsI	GCNGC	6 cut(s)	319, 322, 336, 429, 650, 894
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	3 cut(s)	732, 942, 1380
Bme18I	GGWCC	2 cut(s)	584, 614
BmeT110I	CYCGRG	2 cut(s)	266, 885
BmgT120I	GGNCC	3 cut(s)	584, 614, 944
BmiI	GGNNCC	6 cut(s)	585, 616, 906, 1332, 1437, 1450
BmrFI	CCNGG	3 cut(s)	732, 942, 1380
BmsI	GCATC	2 cut(s)	84, 960
BmtI	GCTAGC	1 cut(s)	438
BpiI	GAAGAC	2 cut(s)	366, 587
Bpu10I	CCTNAGC	1 cut(s)	798
Bsa29I	ATCGAT	1 cut(s)	1503
BsaHI	GRCGYC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	750, 941, 1378
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 97, 688, 799, 941, 1138, 1445
Bse1I	ACTGG	2 cut(s)	261, 1347
BseBI	CCWGG	3 cut(s)	732, 942, 1380
BseCI	ATCGAT	1 cut(s)	1503
BseDI	CCNNGG	3 cut(s)	750, 941, 1378
BseGI	GGATG	6 cut(s)	265, 913, 970, 975, 1343, 1423
BseLI	CCNNNNNNNGG	7 cut(s)	37, 97, 688, 799, 941, 1138, 1445
BseMII	CTCAG	3 cut(s)	461, 812, 974
BseNI	ACTGG	2 cut(s)	261, 1347
BseRI	GAGGAG	6 cut(s)	80, 131, 238, 858, 861, 1448
BseXI	GCAGC	4 cut(s)	307, 321, 439, 904
BseYI	CCCAGC	1 cut(s)	617
BsgI	GTGCAG	2 cut(s)	911, 1259
BshFI	GGCC	4 cut(s)	317, 388, 681, 946
BshVI	ATCGAT	1 cut(s)	1503
BsiHKAI	GWGCWC	2 cut(s)	267, 765
BsiHKCI	CYCGRG	2 cut(s)	266, 885
BsiSI	CCGG	1 cut(s)	392
BslI	CCNNNNNNNGG	7 cut(s)	37, 97, 688, 799, 941, 1138, 1445
BsmAI	GTCTC	2 cut(s)	189, 551
BsnI	GGCC	4 cut(s)	317, 388, 681, 946
Bso31I	GGTCTC	1 cut(s)	551
BsoBI	CYCGRG	2 cut(s)	266, 885
Bsp1286I	GDGCHC	2 cut(s)	267, 765
Bsp1407I	TGTACA	2 cut(s)	499, 694
Bsp143I	GATC	8 cut(s)	6, 703, 727, 838, 931, 1270, 1500, 1513
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	5 cut(s)	73, 318, 648, 1074, 1519
BspANI	GGCC	4 cut(s)	317, 388, 681, 946
BspCNI	CTCAG	3 cut(s)	460, 811, 973
BspDI	ATCGAT	1 cut(s)	1503
BspHI	TCATGA	1 cut(s)	1429
BspLI	GGNNCC	6 cut(s)	585, 616, 906, 1332, 1437, 1450
BspMAI	CTGCAG	1 cut(s)	325
BspOI	GCTAGC	1 cut(s)	438
BspPI	GGATC	3 cut(s)	722, 833, 926
BspTI	CTTAAG	1 cut(s)	1030
BspTNI	GGTCTC	1 cut(s)	551
BsrGI	TGTACA	2 cut(s)	499, 694
BsrI	ACTGG	2 cut(s)	261, 1347
BssECI	CCNNGG	3 cut(s)	750, 941, 1378
BssMI	GATC	8 cut(s)	6, 703, 727, 838, 931, 1270, 1500, 1513
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	3 cut(s)	732, 942, 1380
Bst4CI	ACNGT	4 cut(s)	113, 246, 499, 1406
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	371
BstAFI	CTTAAG	1 cut(s)	1030
BstAUI	TGTACA	2 cut(s)	499, 694
BstC8I	GCNNGC	4 cut(s)	365, 432, 436, 948
BstDEI	CTNAG	4 cut(s)	447, 798, 960, 1063
BstDSI	CCRYGG	1 cut(s)	750
BstENI	CCTNNNNNAGG	2 cut(s)	95, 686
BstF5I	GGATG	6 cut(s)	265, 913, 970, 975, 1343, 1423
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	8 cut(s)	9, 706, 730, 841, 934, 1273, 1503, 1516
BstMAI	GTCTC	2 cut(s)	189, 551
BstMBI	GATC	8 cut(s)	6, 703, 727, 838, 931, 1270, 1500, 1513
BstNI	CCWGG	3 cut(s)	732, 942, 1380
BstNSI	RCATGY	1 cut(s)	1074
BstSCI	CCNGG	3 cut(s)	730, 940, 1378
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	4 cut(s)	307, 321, 439, 904
BstV2I	GAAGAC	2 cut(s)	366, 587
BstX2I	RGATCY	2 cut(s)	838, 931
BstYI	RGATCY	2 cut(s)	838, 931
Bsu15I	ATCGAT	1 cut(s)	1503
BsuI	GTATCC	1 cut(s)	1399
BsuRI	GGCC	4 cut(s)	317, 388, 681, 946
BsuTUI	ATCGAT	1 cut(s)	1503
BtgI	CCRYGG	1 cut(s)	750
BtgZI	GCGATG	1 cut(s)	61
BtsCI	GGATG	6 cut(s)	265, 913, 970, 975, 1343, 1423
BtsIMutI	CAGTG	4 cut(s)	307, 611, 651, 765
Cac8I	GCNNGC	4 cut(s)	365, 432, 436, 948
CaiI	CAGNNNCTG	1 cut(s)	947
CciI	TCATGA	1 cut(s)	1429
CfoI	GCGC	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	584, 614, 944
ClaI	ATCGAT	1 cut(s)	1503
Csp6I	GTAC	5 cut(s)	254, 463, 495, 500, 695
CviQI	GTAC	5 cut(s)	254, 463, 495, 500, 695
DdeI	CTNAG	4 cut(s)	447, 798, 960, 1063
DpnI	GATC	8 cut(s)	8, 705, 729, 840, 933, 1272, 1502, 1515
DpnII	GATC	8 cut(s)	6, 703, 727, 838, 931, 1270, 1500, 1513
DrdI	GACNNNNNNGTC	1 cut(s)	448
DseDI	GACNNNNNNGTC	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	681
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	551
Eco47I	GGWCC	2 cut(s)	584, 614
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	2 cut(s)	581, 1425
Eco88I	CYCGRG	2 cut(s)	266, 885
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	2 cut(s)	95, 686
EcoO109I	RGGNCCY	2 cut(s)	614, 944
EcoRI	GAATTC	2 cut(s)	284, 742
EcoRII	CCWGG	3 cut(s)	730, 940, 1378
EcoT14I	CCWWGG	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	750
FauNDI	CATATG	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	6 cut(s)	318, 321, 335, 428, 649, 893
FokI	GGATG	6 cut(s)	272, 900, 977, 982, 1330, 1410
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	6 cut(s)	318, 321, 335, 428, 649, 893
FspBI	CTAG	4 cut(s)	102, 435, 567, 666
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	6 cut(s)	318, 321, 335, 428, 649, 893
GsaI	CCCAGC	1 cut(s)	621
HaeIII	GGCC	4 cut(s)	317, 388, 681, 946
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	1 cut(s)	623
Hin1I	GRCGYC	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HincII	GTYRAC	3 cut(s)	43, 1146, 1409
HindII	GTYRAC	3 cut(s)	43, 1146, 1409
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	4 cut(s)	406, 737, 751, 791
Hpy166II	GTNNAC	7 cut(s)	43, 254, 305, 397, 1146, 1352, 1409
Hpy188I	TCNGA	7 cut(s)	62, 155, 175, 1044, 1153, 1375, 1444
Hpy188III	TCNNGA	7 cut(s)	194, 520, 567, 800, 962, 1196, 1430
Hpy8I	GTNNAC	7 cut(s)	43, 254, 305, 397, 1146, 1352, 1409
HpyAV	CCTTC	4 cut(s)	716, 822, 927, 1449
HpyCH4III	ACNGT	4 cut(s)	113, 246, 499, 1406
HpyCH4IV	ACGT	3 cut(s)	12, 371, 1002
HpyCH4V	TGCA	6 cut(s)	323, 367, 892, 950, 1276, 1319
HpyF3I	CTNAG	4 cut(s)	447, 798, 960, 1063
HpySE526I	ACGT	3 cut(s)	12, 371, 1002
Hsp92I	GRCGYC	1 cut(s)	371
HspAI	GCGC	1 cut(s)	621
Kzo9I	GATC	8 cut(s)	6, 703, 727, 838, 931, 1270, 1500, 1513
LmnI	GCTCC	3 cut(s)	910, 1336, 1435
Lsp1109I	GCAGC	4 cut(s)	307, 321, 439, 904
LweI	GCATC	2 cut(s)	84, 960
MaeI	CTAG	4 cut(s)	102, 435, 567, 666
MaeII	ACGT	3 cut(s)	12, 371, 1002
MaeIII	GTNAC	2 cut(s)	1302, 1400
MalI	GATC	8 cut(s)	8, 705, 729, 840, 933, 1272, 1502, 1515
MboI	GATC	8 cut(s)	6, 703, 727, 838, 931, 1270, 1500, 1513
MfeI	CAATTG	2 cut(s)	1314, 1320
MflI	RGATCY	2 cut(s)	838, 931
MhlI	GDGCHC	2 cut(s)	267, 765
MlyI	GAGTC	5 cut(s)	19, 42, 235, 278, 1151
MmeI	TCCRAC	3 cut(s)	313, 750, 1358
MseI	TTAA	5 cut(s)	534, 630, 659, 1031, 1485
MslI	CAYNNNNRTG	1 cut(s)	1428
MspA1I	CMGCKG	2 cut(s)	320, 334
MspCI	CTTAAG	1 cut(s)	1030
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	3 cut(s)	732, 942, 1380
MunI	CAATTG	2 cut(s)	1314, 1320
MvaI	CCWGG	3 cut(s)	732, 942, 1380
NcoI	CCATGG	1 cut(s)	750
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	8 cut(s)	6, 703, 727, 838, 931, 1270, 1500, 1513
NheI	GCTAGC	1 cut(s)	434
NlaIV	GGNNCC	6 cut(s)	585, 616, 906, 1332, 1437, 1450
NmeAIII	GCCGAG	1 cut(s)	56
NspI	RCATGY	1 cut(s)	1074
PaeR7I	CTCGAG	2 cut(s)	266, 885
PagI	TCATGA	1 cut(s)	1429
PceI	AGGCCT	1 cut(s)	681
PfeI	GAWTC	7 cut(s)	63, 208, 523, 755, 803, 1154, 1228
PflFI	GACNNNGTC	1 cut(s)	562
PkrI	GCNGC	6 cut(s)	319, 322, 336, 429, 650, 894
PleI	GAGTC	5 cut(s)	19, 41, 234, 277, 1150
PpsI	GAGTC	5 cut(s)	19, 41, 234, 277, 1150
PpuMI	RGGWCCY	1 cut(s)	614
PshBI	ATTAAT	1 cut(s)	1485
Psp124BI	GAGCTC	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	3 cut(s)	730, 940, 1378
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	3 cut(s)	730, 940, 1378
PspN4I	GGNNCC	6 cut(s)	585, 616, 906, 1332, 1437, 1450
PspPI	GGNCC	3 cut(s)	584, 614, 944
PspPPI	RGGWCCY	1 cut(s)	614
PspXI	VCTCGAGB	2 cut(s)	266, 885
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	2 cut(s)	838, 931
PsyI	GACNNNGTC	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	5 cut(s)	255, 464, 496, 501, 696
RsaNI	GTAC	5 cut(s)	254, 463, 495, 500, 695
RseI	CAYNNNNRTG	1 cut(s)	1428
SacI	GAGCTC	1 cut(s)	267
SalI	GTCGAC	1 cut(s)	41
SaqAI	TTAA	5 cut(s)	534, 630, 659, 1031, 1485
SatI	GCNGC	6 cut(s)	318, 321, 335, 428, 649, 893
Sau3AI	GATC	8 cut(s)	6, 703, 727, 838, 931, 1270, 1500, 1513
Sau96I	GGNCC	3 cut(s)	584, 614, 944
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	5 cut(s)	19, 42, 235, 278, 1151
ScrFI	CCNGG	3 cut(s)	732, 942, 1380
SduI	GDGCHC	2 cut(s)	267, 765
SfaNI	GCATC	2 cut(s)	84, 960
SfcI	CTRYAG	1 cut(s)	321
Sfr274I	CTCGAG	2 cut(s)	266, 885
SinI	GGWCC	2 cut(s)	584, 614
SlaI	CTCGAG	2 cut(s)	266, 885
SmiMI	CAYNNNNRTG	1 cut(s)	1428
SmlI	CTYRAG	3 cut(s)	266, 885, 1030
SmoI	CTYRAG	3 cut(s)	266, 885, 1030
SseBI	AGGCCT	1 cut(s)	681
SsiI	CCGC	5 cut(s)	73, 318, 648, 1074, 1519
SspI	AATATT	1 cut(s)	1185
SspMI	CTAG	4 cut(s)	102, 435, 567, 666
SstI	GAGCTC	1 cut(s)	267
StuI	AGGCCT	1 cut(s)	681
StyD4I	CCNGG	3 cut(s)	730, 940, 1378
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	4 cut(s)	113, 246, 499, 1406
TaiI	ACGT	3 cut(s)	15, 374, 1005
TaqI	TCGA	7 cut(s)	36, 42, 161, 193, 267, 886, 1503
TatI	WGTACW	5 cut(s)	253, 462, 494, 499, 694
TauI	GCSGC	2 cut(s)	320, 651
TfiI	GAWTC	7 cut(s)	63, 208, 523, 755, 803, 1154, 1228
Tru1I	TTAA	5 cut(s)	534, 630, 659, 1031, 1485
Tru9I	TTAA	5 cut(s)	534, 630, 659, 1031, 1485
TscAI	CASTG	4 cut(s)	307, 611, 658, 765
TseI	GCWGC	4 cut(s)	320, 334, 427, 892
TspGWI	ACGGA	1 cut(s)	1381
TspRI	CASTG	4 cut(s)	307, 611, 658, 765
Tth111I	GACNNNGTC	1 cut(s)	562
Vha464I	CTTAAG	1 cut(s)	1030
VpaK11BI	GGWCC	2 cut(s)	584, 614
VspI	ATTAAT	1 cut(s)	1485
XagI	CCTNNNNNAGG	2 cut(s)	95, 686
XapI	RAATTY	4 cut(s)	284, 626, 673, 742
XbaI	TCTAGA	1 cut(s)	566
XceI	RCATGY	1 cut(s)	1074
XhoI	CTCGAG	2 cut(s)	266, 885
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	4 cut(s)	102, 435, 567, 666
ZraI	GACGTC	1 cut(s)	372
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.