Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009296

Physical Location & Seq

Genomic Coordinates Reverse (-)

34153334 .. 34153720

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0196300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCTAAAATTTCCATTGCTATGACGAAGCTTGTGGACTCGGCTGCTACTGAGGCTATTGCAAATCTCTCTCTTCAGCTCTTCAAAGAGTTCAAAAGCATCAACGAGTCTTATGTAGAAGAACGTGAGCGGTCTATGGAATTGTCTAAAGTGGTATCGGCAGAAAAGGAAAGAAACGACAGCATCCAGAGGCAGCTCGAGCTGTATACTAAGAGGCAAAAGATACAAAGGATCGGTTCTTCGGACATTAATGGCGCACAAAACTCTCCAGAAAAACAAGCCACTCGAAATACAAACTCAACAAAAGTTGTCAATCGGGTCGTGCCTGCATATCGCAGGGCAAAAGTACGTGGTACTGTTCTGCAGGAAATCGAAGATGAAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006464 GO:0006508 GO:0006807 GO:0006810 GO:0006897 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009987 GO:0010638 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0016579 GO:0019538 GO:0031224 GO:0031410 GO:0031982 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033043 GO:0033157 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0044088 GO:0044090 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046907 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051641 GO:0051649 GO:0060341 GO:0065007 GO:0070201 GO:0070536 GO:0070646 GO:0070647 GO:0071108 GO:0071704 GO:0071840 GO:0090087 GO:0090316 GO:0097708 GO:0098657 GO:1901564 GO:1903827 GO:1903829 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

JAB USP8_dimer

Protein Analysis

128

Amino Acids

14.56

Weight (kDa)

9.43

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16144
fragaria_vesca	FvH4_4g19320 FvH4_4g19320 FvH4_4g19320
malus_domestica	MD13G1157700.v1.1 MD16G1158700.v1.1
prunus_persica	Prupe.1G125200_v2.0.a1
pyrus_communis	pycom13g13500 pycom16g13350
rosa_chinensis	RchiOBHm_Chr4g0424341
rosa_laevigata	RLG00000007483
rosa_multiflora	Rmu_sc0005995.1_g000011
rosa_roxburghii	Rroxscaffold_5G00366290
rosa_rugosa	Rorug04G0196100 Rorug04G0196200 Rorug04G0196300 Rorug04G0196400
rosa_samantha	Rh4AG252900 Rh4BG258300 Rh4CG269300 Rh4DG252700
rosa_wichuraiana	Rw4G021810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	348, 355
AgsI	TTSAA	2 cut(s)	85, 94
AluBI	AGCT	4 cut(s)	31, 79, 196, 202
AluI	AGCT	4 cut(s)	31, 79, 196, 202
AlwI	GGATC	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	44, 193
ApoI	RAATTY	1 cut(s)	9
AseI	ATTAAT	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	31, 205
BfmI	CTRYAG	1 cut(s)	362
BisI	GCNGC	2 cut(s)	45, 194
BlsI	GCNGC	2 cut(s)	46, 195
BmeT110I	CYCGRG	1 cut(s)	197
BmsI	GCATC	2 cut(s)	108, 192
BpmI	CTGGAG	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	350
Bse3DI	GCAATG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	42
BseXI	GCAGC	2 cut(s)	31, 205
BsiHKCI	CYCGRG	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	43
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	15
BssMI	GATC	1 cut(s)	231
BssNAI	GTATAC	1 cut(s)	207
Bst1107I	GTATAC	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	78, 86
BstBAI	YACGTR	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	3 cut(s)	51, 210, 384
BstF5I	GGATG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 199
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	31, 205
BstZ17I	GTATAC	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	347, 354
CviJI	RGCY	7 cut(s)	31, 44, 56, 79, 196, 202, 281
CviKI_1	RGCY	7 cut(s)	31, 44, 56, 79, 196, 202, 281
CviQI	GTAC	2 cut(s)	347, 354
DdeI	CTNAG	3 cut(s)	51, 210, 384
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	78, 86
EarI	CTCTTC	2 cut(s)	78, 86
Eco57I	CTGAAG	1 cut(s)	59
Eco88I	CYCGRG	1 cut(s)	197
FaiI	YATR	5 cut(s)	23, 114, 137, 207, 331
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	45, 194
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	45, 194
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	2 cut(s)	45, 194
GsuI	CTGGAG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	38, 107
Hpy166II	GTNNAC	2 cut(s)	37, 207
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	187, 269
Hpy8I	GTNNAC	2 cut(s)	37, 207
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	2 cut(s)	124, 349
HpyCH4V	TGCA	3 cut(s)	62, 329, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 199
HpyF3I	CTNAG	3 cut(s)	51, 210, 384
HpySE526I	ACGT	2 cut(s)	124, 349
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	231
LguI	GCTCTTC	1 cut(s)	86
LpnPI	CCDG	5 cut(s)	200, 282, 322, 339, 350
Lsp1109I	GCAGC	2 cut(s)	31, 205
LweI	GCATC	2 cut(s)	108, 192
MaeII	ACGT	2 cut(s)	124, 349
MalI	GATC	1 cut(s)	233
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	1 cut(s)	231
MboII	GAAGA	5 cut(s)	65, 73, 131, 231, 386
MluCI	AATT	2 cut(s)	9, 140
MlyI	GAGTC	2 cut(s)	32, 116
MnlI	CCTC	3 cut(s)	46, 183, 207
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	53, 199
NdeII	GATC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	46, 195
PleI	GAGTC	2 cut(s)	32, 115
PpsI	GAGTC	2 cut(s)	32, 115
Ppu21I	YACGTR	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	249
PspXI	VCTCGAGB	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	366
RsaI	GTAC	2 cut(s)	348, 355
RsaNI	GTAC	2 cut(s)	347, 354
RseI	CAYNNNNRTG	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	45, 194
Sau3AI	GATC	1 cut(s)	231
SchI	GAGTC	2 cut(s)	32, 116
SetI	ASST	6 cut(s)	33, 81, 127, 198, 204, 352
SfaNI	GCATC	2 cut(s)	108, 192
SfcI	CTRYAG	1 cut(s)	362
Sfr274I	CTCGAG	1 cut(s)	197
SlaI	CTCGAG	1 cut(s)	197
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	9, 140
SsiI	CCGC	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	2 cut(s)	127, 352
TaqI	TCGA	3 cut(s)	198, 286, 372
TasI	AATT	2 cut(s)	9, 140
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseI	GCWGC	2 cut(s)	44, 193
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	1 cut(s)	9
XhoI	CTCGAG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.