AT4G17280

Cytochrome b561 and DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012068
Physical Location & Seq
Reverse (-)
9678625 .. 9680389
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17280.1

Sequence Viewer

Length: 1209 bp
ATGAGTAATCATATGTCCATTATGAAGTTCTTGAATCAAATCCTCTGTCTCTCTCTTATCCTCTCCATATCCATGACTACTCTTTCCTTTGCTCAGACATGTTCTAAATACAAGTTCTCCAGCAACAATGTCTTTGACTCTTGCAACGATCTTCCTTTTCTTGATTCCTTCCTCCATTACACTTACGAGTCTTCCACCGGGAGCCTCCACATTGCTTATCGCCACACTAAGCTCACCTCTGGTAAATGGGTTGCTTGGGCTGTGAACCCAACGTCTACGGGAATGGTGGGAGCTCAAGCCATCGTTGCTTATCCACAATCAGATGGTACTGTCAGGGTTTACACTTCTCCCATCAGAAGCTACCAGACGAGTCTACTAGAGGGTGATCTGAGTTTCAATGTCTCTGGTTTGTCTGCAACTTACCAGAACAATGAGATCGTTGTGTTGGCAAGTCTGAAGCTTGCACAGGATCTTGGGAATGGTGGAACCATTAACACAGTGTGGCAAGATGGGTCAATGTCTGGGAACAGTCTTCTGCCTCATCCAACTTCTGGCAACAATGTTCGATCAGTGTCAACTCTCAATCTGGTATCCGGTGTTTCAGCAGCTGCAGGAGGAGCTGGAGGAAGTTCCAAGCTTCGCAAACGCAATATTCATGGAATATTGAATGGAGTGAGCTGGGGAATCATGATGCCACTAGGGGCAATCATTGCTCGATACTTGAGAGTAGCCAAATCAGCAGACCCTGCTTGGTTCTACATTCACGTTTTCTGCCAGGCTTCTGCTTACATCATCGGTGTTGCCGGATGGGCCACTGGTCTCAAACTCGGTGGCGACTCACCAGGGATTCAGTACAGCACCCACCGTGCCATCGGGATCGCTCTCTTCTCTCTAGCGACAGTTCAGGTGTTTGCGATGTTTCTGAGGCCAAAACCAGAGCACAAGCATAGGCTCTACTGGAACATTTACCACCACACGATCGGCTACACGATAATCATCCTAGGGGTGGTGAACGTTTTCAAAGGGCTAGGCATATTGAGTCCCAAGAAGCAGTGGAAAAATGCCTACATCGGTATCATTGTTGTTCTCGCCATTGTGGCCACCCTACTCGAAGCCTTCACCTGGTATGTAGTCATTAAAAGAAGGAAACTGGAGGCTAAAACGGCTCAGCATGGAGCATCTAACGGCACTCGGTCTCAGTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

402

Amino Acids

43.68

Weight (kDa)

9.76

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 95 - 196 1.2e-23 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 233 - 343 9.6e-08 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17280 AT5G47530
fragaria_vesca FvH4_3g00780 FvH4_3g00780
malus_domestica MD05G1359500.v1.1 MD10G1335000.v1.1
prunus_persica Prupe.4G008600_v2.0.a1
pyrus_communis pycom10g28480
rosa_chinensis RchiOBHm_Chr5g0001021
rosa_laevigata RLG00000030914
rosa_multiflora Rmu_sc0000255.1_g000030 Rmu_sc0004189.1_g000001
rosa_roxburghii Rroxscaffold_1G00075260
rosa_rugosa Rorug04G0389000
rosa_samantha Rh5AG008200 Rh5BG010300 Rh5CG008900 Rh5DG009000
rosa_wichuraiana Rw5G000840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 551
AccI GTMKAC 2 cut(s) 275, 373
AclI AACGTT 1 cut(s) 1014
AclWI GGATC 2 cut(s) 477, 884
AcoI YGGCCR 1 cut(s) 1098
AcuI CTGAAG 1 cut(s) 476
AdeI CACNNNGTG 1 cut(s) 501
AfaI GTAC 2 cut(s) 328, 854
AfiI CCNNNNNNNGG 3 cut(s) 551, 1006, 1122
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 4 cut(s) 34, 397, 667, 1021
AjnI CCWGG 3 cut(s) 774, 841, 1121
AluBI AGCT 8 cut(s) 232, 293, 360, 460, 608, 620, 637, 678
AluI AGCT 8 cut(s) 232, 293, 360, 460, 608, 620, 637, 678
Alw21I GWGCWC 2 cut(s) 295, 942
Alw26I GTCTC 4 cut(s) 53, 406, 824, 1200
AlwI GGATC 2 cut(s) 477, 884
AlwNI CAGNNNCTG 2 cut(s) 608, 746
AoxI GGCC 3 cut(s) 810, 926, 1098
ApeKI GCWGC 2 cut(s) 605, 608
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
Asp700I GAANNNNTTC 1 cut(s) 1016
AspA2I CCTAGG 1 cut(s) 1000
AspS9I GGNCC 1 cut(s) 810
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 5 cut(s) 226, 395, 831, 1021, 1111
AvrII CCTAGG 1 cut(s) 1000
BaeI ACNNNNGTAYC 2 cut(s) 1057, 1090
BalI TGGCCA 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 183, 524
Bbv12I GWGCWC 2 cut(s) 295, 942
BbvI GCAGC 2 cut(s) 595, 617
BccI CCATC 6 cut(s) 308, 317, 359, 503, 801, 878
BceAI ACGGC 2 cut(s) 1179, 1201
BciT130I CCWGG 3 cut(s) 776, 843, 1123
BciVI GTATCC 1 cut(s) 601
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 4 cut(s) 53, 406, 824, 1200
BfaI CTAG 5 cut(s) 377, 698, 893, 1001, 1028
BfmI CTRYAG 1 cut(s) 609
BfuI GTATCC 1 cut(s) 601
BglI GCCNNNNNGGC 2 cut(s) 809, 1097
BisI GCNGC 2 cut(s) 606, 609
BlnI CCTAGG 1 cut(s) 1000
BlpI GCTNAGC 1 cut(s) 1167
BlsI GCNGC 2 cut(s) 607, 610
Bme1390I CCNGG 4 cut(s) 199, 776, 843, 1123
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 2 cut(s) 203, 487
BmrFI CCNGG 4 cut(s) 199, 776, 843, 1123
BmsI GCATC 2 cut(s) 681, 1187
BpiI GAAGAC 2 cut(s) 183, 524
BpmI CTGGAG 3 cut(s) 103, 642, 1172
Bpu1102I GCTNAGC 1 cut(s) 1167
BpuEI CTTGAG 2 cut(s) 279, 742
BpuMI CCSGG 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 995
BsaI GGTCTC 2 cut(s) 824, 1200
BsaJI CCNNGG 2 cut(s) 842, 1000
BsaWI WCCGGW 1 cut(s) 593
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 1006, 1122
Bse1I ACTGG 3 cut(s) 820, 962, 1155
Bse3DI GCAATG 2 cut(s) 210, 708
Bse8I GATNNNNATC 1 cut(s) 995
BseBI CCWGG 3 cut(s) 776, 843, 1123
BseDI CCNNGG 2 cut(s) 842, 1000
BseGI GGATG 3 cut(s) 541, 812, 996
BseJI GATNNNNATC 1 cut(s) 995
BseLI CCNNNNNNNGG 3 cut(s) 551, 1006, 1122
BseMI GCAATG 2 cut(s) 210, 708
BseMII CTCAG 4 cut(s) 107, 380, 914, 1181
BseNI ACTGG 3 cut(s) 820, 962, 1155
BseRI GAGGAG 1 cut(s) 630
BseXI GCAGC 2 cut(s) 595, 617
BseYI CCCAGC 1 cut(s) 678
Bsh1285I CGRYCG 1 cut(s) 981
BshFI GGCC 3 cut(s) 812, 928, 1100
BsiEI CGRYCG 1 cut(s) 981
BsiHKAI GWGCWC 2 cut(s) 295, 942
BsiSI CCGG 3 cut(s) 198, 594, 804
BslFI GGGAC 1 cut(s) 1026
BslI CCNNNNNNNGG 3 cut(s) 551, 1006, 1122
BsmAI GTCTC 4 cut(s) 53, 406, 824, 1200
BsmFI GGGAC 1 cut(s) 1026
BsnI GGCC 3 cut(s) 812, 928, 1100
Bso31I GGTCTC 2 cut(s) 824, 1200
Bsp1286I GDGCHC 2 cut(s) 295, 942
Bsp143I GATC 7 cut(s) 148, 385, 435, 469, 566, 876, 978
Bsp1720I GCTNAGC 1 cut(s) 1167
BspANI GGCC 3 cut(s) 812, 928, 1100
BspCNI CTCAG 4 cut(s) 106, 381, 915, 1180
BspHI TCATGA 1 cut(s) 687
BspLI GGNNCC 2 cut(s) 203, 487
BspMAI CTGCAG 1 cut(s) 613
BspPI GGATC 2 cut(s) 477, 884
BspTNI GGTCTC 2 cut(s) 824, 1200
BsrDI GCAATG 2 cut(s) 210, 708
BsrI ACTGG 3 cut(s) 820, 962, 1155
BssECI CCNNGG 2 cut(s) 842, 1000
BssMI GATC 7 cut(s) 148, 385, 435, 469, 566, 876, 978
BssT1I CCWWGG 1 cut(s) 1000
Bst2UI CCWGG 3 cut(s) 776, 843, 1123
Bst4CI ACNGT 5 cut(s) 331, 499, 530, 866, 901
Bst6I CTCTTC 1 cut(s) 890
BstAPI GCANNNNNTGC 2 cut(s) 710, 746
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 6 cut(s) 93, 228, 389, 923, 1167, 1197
BstF5I GGATG 3 cut(s) 541, 812, 996
BstKTI GATC 7 cut(s) 151, 388, 438, 472, 569, 879, 981
BstMAI GTCTC 4 cut(s) 53, 406, 824, 1200
BstMBI GATC 7 cut(s) 148, 385, 435, 469, 566, 876, 978
BstMCI CGRYCG 1 cut(s) 981
BstMWI GCNNNNNNNGC 8 cut(s) 305, 617, 710, 737, 746, 809, 1097, 1163
BstNI CCWGG 3 cut(s) 776, 843, 1123
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 4 cut(s) 197, 774, 841, 1121
BstSFI CTRYAG 1 cut(s) 609
BstV1I GCAGC 2 cut(s) 595, 617
BstV2I GAAGAC 2 cut(s) 183, 524
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 3 cut(s) 812, 928, 1100
BtgZI GCGATG 1 cut(s) 929
BtsCI GGATG 3 cut(s) 541, 812, 996
BtsI GCAGTG 1 cut(s) 1058
BtsIMutI CAGTG 4 cut(s) 504, 576, 813, 1058
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 2 cut(s) 608, 746
CciI TCATGA 1 cut(s) 687
Cfr13I GGNCC 1 cut(s) 810
CsiI ACCWGGT 1 cut(s) 1121
Csp6I GTAC 2 cut(s) 327, 853
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 5 cut(s) 73, 99, 656, 688, 1172
CviQI GTAC 2 cut(s) 327, 853
DdeI CTNAG 6 cut(s) 93, 228, 389, 923, 1167, 1197
DpnI GATC 7 cut(s) 150, 387, 437, 471, 568, 878, 980
DpnII GATC 7 cut(s) 148, 385, 435, 469, 566, 876, 978
DraIII CACNNNGTG 1 cut(s) 501
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 1 cut(s) 890
EarI CTCTTC 1 cut(s) 890
Ecl136II GAGCTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 1000
Eco24I GRGCYC 1 cut(s) 295
Eco31I GGTCTC 2 cut(s) 824, 1200
Eco53kI GAGCTC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 293
EcoRII CCWGG 3 cut(s) 774, 841, 1121
EcoT14I CCWWGG 1 cut(s) 1000
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 1000
FaeI CATG 5 cut(s) 76, 102, 659, 691, 1175
FaqI GGGAC 1 cut(s) 1026
FatI CATG 5 cut(s) 72, 98, 655, 687, 1171
FauNDI CATATG 1 cut(s) 12
FblI GTMKAC 2 cut(s) 275, 373
Fnu4HI GCNGC 2 cut(s) 606, 609
FokI GGATG 3 cut(s) 528, 819, 983
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 606, 609
FspBI CTAG 5 cut(s) 377, 698, 893, 1001, 1028
GluI GCNGC 2 cut(s) 606, 609
GsaI CCCAGC 1 cut(s) 682
GsuI CTGGAG 3 cut(s) 103, 642, 1172
HaeIII GGCC 3 cut(s) 812, 928, 1100
HapII CCGG 3 cut(s) 198, 594, 804
Hin1II CATG 5 cut(s) 76, 102, 659, 691, 1175
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HindIII AAGCTT 2 cut(s) 458, 635
HinfI GANTC 9 cut(s) 34, 137, 164, 188, 370, 684, 836, 847, 1039
HpaII CCGG 3 cut(s) 198, 594, 804
HphI GGTGA 5 cut(s) 226, 395, 831, 1021, 1111
Hpy166II GTNNAC 6 cut(s) 265, 276, 340, 374, 576, 1012
Hpy188I TCNGA 6 cut(s) 96, 322, 356, 390, 456, 924
Hpy188III TCNNGA 4 cut(s) 31, 161, 688, 874
Hpy8I GTNNAC 6 cut(s) 265, 276, 340, 374, 576, 1012
HpyAV CCTTC 3 cut(s) 178, 1126, 1137
HpyCH4III ACNGT 5 cut(s) 331, 499, 530, 866, 901
HpyCH4IV ACGT 3 cut(s) 272, 765, 1014
HpyCH4V TGCA 4 cut(s) 144, 416, 464, 611
HpyF10VI GCNNNNNNNGC 8 cut(s) 305, 617, 710, 737, 746, 809, 1097, 1163
HpyF3I CTNAG 6 cut(s) 93, 228, 389, 923, 1167, 1197
HpySE526I ACGT 3 cut(s) 272, 765, 1014
Hsp92II CATG 5 cut(s) 76, 102, 659, 691, 1175
Kzo9I GATC 7 cut(s) 148, 385, 435, 469, 566, 876, 978
LmnI GCTCC 4 cut(s) 201, 290, 617, 1175
Lsp1109I GCAGC 2 cut(s) 595, 617
LweI GCATC 2 cut(s) 681, 1187
MabI ACCWGGT 1 cut(s) 1121
MaeI CTAG 5 cut(s) 377, 698, 893, 1001, 1028
MaeII ACGT 3 cut(s) 272, 765, 1014
MalI GATC 7 cut(s) 150, 387, 437, 471, 568, 878, 980
MboI GATC 7 cut(s) 148, 385, 435, 469, 566, 876, 978
MboII GAAGA 4 cut(s) 143, 183, 524, 877
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 2 cut(s) 295, 942
MlsI TGGCCA 1 cut(s) 1100
MluNI TGGCCA 1 cut(s) 1100
MlyI GAGTC 5 cut(s) 131, 197, 379, 830, 1048
MmeI TCCRAC 1 cut(s) 569
Mox20I TGGCCA 1 cut(s) 1100
MroXI GAANNNNTTC 1 cut(s) 1016
MscI TGGCCA 1 cut(s) 1100
MseI TTAA 3 cut(s) 492, 1137, 1207
MslI CAYNNNNRTG 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 1100
MspA1I CMGCKG 1 cut(s) 608
MspI CCGG 3 cut(s) 198, 594, 804
MspR9I CCNGG 4 cut(s) 199, 776, 843, 1123
MvaI CCWGG 3 cut(s) 776, 843, 1123
MwoI GCNNNNNNNGC 8 cut(s) 305, 617, 710, 737, 746, 809, 1097, 1163
NciI CCSGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 12
NdeII GATC 7 cut(s) 148, 385, 435, 469, 566, 876, 978
NlaIII CATG 5 cut(s) 76, 102, 659, 691, 1175
NlaIV GGNNCC 2 cut(s) 203, 487
NspI RCATGY 1 cut(s) 102
PagI TCATGA 1 cut(s) 687
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 1016
PfeI GAWTC 4 cut(s) 34, 164, 684, 847
PflMI CCANNNNNTGG 1 cut(s) 551
PkrI GCNGC 2 cut(s) 607, 610
Ple19I CGATCG 1 cut(s) 981
PleI GAGTC 5 cut(s) 131, 196, 378, 830, 1047
PpsI GAGTC 5 cut(s) 131, 196, 378, 830, 1047
PscI ACATGT 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 295
Psp1406I AACGTT 1 cut(s) 1014
Psp6I CCWGG 3 cut(s) 774, 841, 1121
PspFI CCCAGC 1 cut(s) 678
PspGI CCWGG 3 cut(s) 774, 841, 1121
PspN4I GGNNCC 2 cut(s) 203, 487
PspPI GGNCC 1 cut(s) 810
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 2 cut(s) 608, 746
PsuI RGATCY 1 cut(s) 469
PvuI CGATCG 1 cut(s) 981
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 2 cut(s) 328, 854
RsaNI GTAC 2 cut(s) 327, 853
RseI CAYNNNNRTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 295
SaqAI TTAA 3 cut(s) 492, 1137, 1207
SatI GCNGC 2 cut(s) 606, 609
Sau3AI GATC 7 cut(s) 148, 385, 435, 469, 566, 876, 978
Sau96I GGNCC 1 cut(s) 810
SchI GAGTC 5 cut(s) 131, 197, 379, 830, 1048
ScrFI CCNGG 4 cut(s) 199, 776, 843, 1123
SduI GDGCHC 2 cut(s) 295, 942
SexAI ACCWGGT 1 cut(s) 1121
SfaNI GCATC 2 cut(s) 681, 1187
SfcI CTRYAG 1 cut(s) 609
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 294, 721
SmoI CTYRAG 2 cut(s) 294, 721
SspI AATATT 2 cut(s) 652, 663
SspMI CTAG 5 cut(s) 377, 698, 893, 1001, 1028
SstI GAGCTC 1 cut(s) 295
StyD4I CCNGG 4 cut(s) 197, 774, 841, 1121
StyI CCWWGG 1 cut(s) 1000
TaaI ACNGT 5 cut(s) 331, 499, 530, 866, 901
TaiI ACGT 3 cut(s) 275, 768, 1017
TaqI TCGA 3 cut(s) 565, 715, 1110
TaqII GACCGA 1 cut(s) 1182
TatI WGTACW 1 cut(s) 852
TfiI GAWTC 4 cut(s) 34, 164, 684, 847
Tru1I TTAA 3 cut(s) 492, 1137, 1207
Tru9I TTAA 3 cut(s) 492, 1137, 1207
TscAI CASTG 4 cut(s) 504, 576, 820, 1058
TseI GCWGC 2 cut(s) 605, 608
TspDTI ATGAA 2 cut(s) 38, 644
TspRI CASTG 4 cut(s) 504, 576, 820, 1058
Van91I CCANNNNNTGG 1 cut(s) 551
XceI RCATGY 1 cut(s) 102
XmaJI CCTAGG 1 cut(s) 1000
XmiI GTMKAC 2 cut(s) 275, 373
XmnI GAANNNNTTC 1 cut(s) 1016
XspI CTAG 5 cut(s) 377, 698, 893, 1001, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.