Rmu_sc0000255.1_g000030

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000255.1
OG0012068
Physical Location & Seq
Forward (+)
149791 .. 151683
1893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000255.1_g000030.1.cds

Sequence Viewer

Length: 1173 bp
atggcagccatgttcaagcttctcacagctttgtgtgttttggtctctctatcttccttctcagatgcgcaaacatgtaagagccagacgttcaccagcaaccgagccttcacttcctgcagcgaccttccatacctcaacgccttcctccactggacctttgagcagtccaccgggaagctcacgatggcgtacaggcacacgtcggcgtcagacaccaactgggtcgcctgggccatcaacccggacctgaccaagacccagaaggccatgaccggcgcgcaagctcttgttgctattcctcaaaccagtggggccccttcagtccgcacgtctccgatcacaggatacggcacgactttggcgaacggaagtttgagttacgatgtcaccgatatatcggctgagtctctgagcggtgatgtgatcatctacgccacttggaccctgccgacgactacgacgacgattcttcaggtttggcaggagggttcggttgtgagtgggaacccccaacaacacggaagcgatgcggccaatcttaatgcccaggggactttggacttgctttccggccagaccgccgcttccggtggagccagctccacactcaggaagaaaaacattcacgcagtgctaaatgtagtgagttggggtatcttgatgcccgtaggagccatggtagcaaggtacttgaagacattcaaggctgcagacccggcatggttttacctccacgccgggtgccagacctctgcttatattgttggtgttgctggatgggccacaggcattaagctcggtagcgattctgccggtatccaatatgacactcacagaaacattgggattaccctcttctgccttggaacacttcaggtttttgctttgcttctgagacccaacaaggatcacaagttcagattctactggaatatctaccatcatttgaccgggtatcttgtcataattctcagcgttgttaacatattcgaagggttcgacatcttgaaaccaaacaaaaactggaagaattcatacattggcctcatcattgctttggctgtccaagctgctttgttggaagcttacacatggtatgttgtactgaagaggaagaaggctgaaaaggccccccatggctcgaatggtgtcaacggctatggtgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

390

Amino Acids

42.14

Weight (kDa)

9.13

Isoelectric Point (pI)

25.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17280 AT5G47530
fragaria_vesca FvH4_3g00780 FvH4_3g00780
malus_domestica MD05G1359500.v1.1 MD10G1335000.v1.1
prunus_persica Prupe.4G008600_v2.0.a1
pyrus_communis pycom10g28480
rosa_chinensis RchiOBHm_Chr5g0001021
rosa_laevigata RLG00000030914
rosa_multiflora Rmu_sc0000255.1_g000030 Rmu_sc0004189.1_g000001
rosa_roxburghii Rroxscaffold_1G00075260
rosa_rugosa Rorug04G0389000
rosa_samantha Rh5AG008200 Rh5BG010300 Rh5CG008900 Rh5DG009000
rosa_wichuraiana Rw5G000840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 744
AccBSI CCGCTC 1 cut(s) 417
AccII CGCG 1 cut(s) 281
AciI CCGC 5 cut(s) 328, 417, 533, 582, 585
AclWI GGATC 1 cut(s) 918
AcoI YGGCCR 2 cut(s) 534, 574
AcsI RAATTY 1 cut(s) 1033
AcuI CTGAAG 4 cut(s) 306, 458, 860, 1130
AcyI GRCGYC 1 cut(s) 209
AdeI CACNNNGTG 1 cut(s) 634
AfaI GTAC 3 cut(s) 194, 692, 1107
AfiI CCNNNNNNNGG 2 cut(s) 344, 612
AflIII ACRYGT 2 cut(s) 74, 201
AgsI TTSAA 4 cut(s) 16, 697, 706, 1012
AjiI CACGTC 2 cut(s) 204, 333
AjnI CCWGG 2 cut(s) 230, 549
AloI GAACNNNNNNTCC 2 cut(s) 902, 934
AluBI AGCT 8 cut(s) 19, 29, 181, 287, 603, 799, 1073, 1088
AluI AGCT 8 cut(s) 19, 29, 181, 287, 603, 799, 1073, 1088
Alw26I GTCTC 4 cut(s) 49, 339, 414, 892
AlwI GGATC 1 cut(s) 918
AoxI GGCC 8 cut(s) 234, 267, 315, 534, 574, 783, 1045, 1131
ApaI GGGCCC 1 cut(s) 319
ApeKI GCWGC 4 cut(s) 5, 120, 710, 1073
ApoI RAATTY 1 cut(s) 1033
Asp700I GAANNNNTTC 1 cut(s) 701
AspLEI GCGC 3 cut(s) 70, 281, 283
AspS9I GGNCC 8 cut(s) 156, 234, 247, 315, 316, 444, 783, 1132
AsuC2I CCSGG 5 cut(s) 175, 245, 719, 742, 955
AsuHPI GGTGA 3 cut(s) 85, 382, 431
AsuII TTCGAA 1 cut(s) 993
AvaII GGWCC 3 cut(s) 156, 247, 444
BaeGI GKGCMC 1 cut(s) 319
BanI GGYRCC 1 cut(s) 744
BanII GRGCYC 1 cut(s) 319
BarI GAAGNNNNNNTAC 2 cut(s) 1022, 1054
BbsI GAAGAC 1 cut(s) 704
BbvI GCAGC 4 cut(s) 17, 132, 697, 1060
BccI CCATC 4 cut(s) 181, 245, 774, 951
BceAI ACGGC 1 cut(s) 367
BcgI CGANNNNNNTGC 2 cut(s) 781, 815
BciT130I CCWGG 2 cut(s) 232, 551
BciVI GTATCC 2 cut(s) 341, 830
BclI TGATCA 1 cut(s) 426
BcnI CCSGG 5 cut(s) 175, 245, 719, 742, 955
BcoDI GTCTC 4 cut(s) 49, 339, 414, 892
BfmI CTRYAG 2 cut(s) 118, 711
BfuI GTATCC 2 cut(s) 341, 830
BisI GCNGC 6 cut(s) 6, 121, 534, 585, 711, 1074
BlsI GCNGC 6 cut(s) 7, 122, 535, 586, 712, 1075
Bme1390I CCNGG 7 cut(s) 175, 232, 245, 551, 719, 742, 955
Bme18I GGWCC 3 cut(s) 156, 247, 444
BmgBI CACGTC 2 cut(s) 204, 333
BmgT120I GGNCC 8 cut(s) 156, 234, 247, 315, 316, 444, 783, 1132
BmiI GGNNCC 9 cut(s) 316, 317, 318, 446, 509, 598, 676, 746, 1134
BmrFI CCNGG 7 cut(s) 175, 232, 245, 551, 719, 742, 955
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 3 cut(s) 55, 520, 654
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 993
BpuMI CCSGG 5 cut(s) 175, 245, 719, 742, 955
BsaHI GRCGYC 1 cut(s) 209
BsaI GGTCTC 2 cut(s) 49, 892
BsaJI CCNNGG 6 cut(s) 231, 549, 550, 678, 865, 1138
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 2 cut(s) 344, 612
Bse118I RCCGGY 2 cut(s) 275, 815
Bse1I ACTGG 5 cut(s) 158, 227, 309, 935, 1031
Bse3DI GCAATG 1 cut(s) 1053
BseBI CCWGG 2 cut(s) 232, 551
BseDI CCNNGG 6 cut(s) 231, 549, 550, 678, 865, 1138
BseGI GGATG 1 cut(s) 785
BseLI CCNNNNNNNGG 2 cut(s) 344, 612
BseMI GCAATG 1 cut(s) 1053
BseMII CTCAG 6 cut(s) 75, 396, 404, 625, 887, 988
BseNI ACTGG 5 cut(s) 158, 227, 309, 935, 1031
BsePI GCGCGC 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 4 cut(s) 17, 132, 697, 1060
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 8 cut(s) 236, 269, 317, 536, 576, 785, 1047, 1133
BshNI GGYRCC 1 cut(s) 744
BsiSI CCGG 9 cut(s) 174, 245, 276, 573, 591, 719, 741, 816, 954
BslFI GGGAC 1 cut(s) 568
BslI CCNNNNNNNGG 2 cut(s) 344, 612
BsmAI GTCTC 4 cut(s) 49, 339, 414, 892
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 568
BsnI GGCC 8 cut(s) 236, 269, 317, 536, 576, 785, 1047, 1133
Bso31I GGTCTC 2 cut(s) 49, 892
Bsp119I TTCGAA 1 cut(s) 993
Bsp120I GGGCCC 1 cut(s) 315
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 3 cut(s) 339, 426, 910
Bsp19I CCATGG 2 cut(s) 678, 1138
BspACI CCGC 5 cut(s) 328, 417, 533, 582, 585
BspANI GGCC 8 cut(s) 236, 269, 317, 536, 576, 785, 1047, 1133
BspCNI CTCAG 6 cut(s) 74, 397, 405, 624, 888, 987
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 9 cut(s) 316, 317, 318, 446, 509, 598, 676, 746, 1134
BspMAI CTGCAG 2 cut(s) 122, 715
BspPI GGATC 1 cut(s) 918
BspT104I TTCGAA 1 cut(s) 993
BspT107I GGYRCC 1 cut(s) 744
BspTNI GGTCTC 2 cut(s) 49, 892
BsrBI CCGCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 1053
BsrFI RCCGGY 2 cut(s) 275, 815
BsrI ACTGG 5 cut(s) 158, 227, 309, 935, 1031
BssAI RCCGGY 2 cut(s) 275, 815
BssECI CCNNGG 6 cut(s) 231, 549, 550, 678, 865, 1138
BssHII GCGCGC 1 cut(s) 279
BssMI GATC 3 cut(s) 339, 426, 910
BssNI GRCGYC 1 cut(s) 209
BssT1I CCWWGG 3 cut(s) 678, 865, 1138
Bst2UI CCWGG 2 cut(s) 232, 551
Bst6I CTCTTC 2 cut(s) 863, 1106
BstACI GRCGYC 1 cut(s) 209
BstBI TTCGAA 1 cut(s) 993
BstC8I GCNNGC 3 cut(s) 281, 285, 601
BstDEI CTNAG 7 cut(s) 61, 405, 413, 611, 896, 974, 1170
BstDSI CCRYGG 2 cut(s) 678, 1138
BstF5I GGATG 1 cut(s) 785
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 3 cut(s) 70, 281, 283
BstKTI GATC 3 cut(s) 342, 429, 913
BstMAI GTCTC 4 cut(s) 49, 339, 414, 892
BstMBI GATC 3 cut(s) 339, 426, 910
BstMWI GCNNNNNNNGC 6 cut(s) 293, 683, 719, 782, 1070, 1130
BstNI CCWGG 2 cut(s) 232, 551
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 7 cut(s) 173, 230, 243, 549, 717, 740, 953
BstSFI CTRYAG 2 cut(s) 118, 711
BstSLI GKGCMC 1 cut(s) 319
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 4 cut(s) 17, 132, 697, 1060
BstV2I GAAGAC 1 cut(s) 704
BsuI GTATCC 2 cut(s) 341, 830
BsuRI GGCC 8 cut(s) 236, 269, 317, 536, 576, 785, 1047, 1133
BtgI CCRYGG 2 cut(s) 678, 1138
BtgZI GCGATG 1 cut(s) 543
BtrI CACGTC 2 cut(s) 204, 333
BtsCI GGATG 1 cut(s) 785
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 3 cut(s) 151, 316, 639
Cac8I GCNNGC 3 cut(s) 281, 285, 601
CfoI GCGC 3 cut(s) 70, 281, 283
Cfr10I RCCGGY 2 cut(s) 275, 815
Cfr13I GGNCC 8 cut(s) 156, 234, 247, 315, 316, 444, 783, 1132
CseI GACGC 1 cut(s) 198
Csp6I GTAC 3 cut(s) 193, 691, 1106
CviAII CATG 7 cut(s) 10, 75, 271, 679, 723, 1095, 1139
CviQI GTAC 3 cut(s) 193, 691, 1106
DdeI CTNAG 7 cut(s) 61, 405, 413, 611, 896, 974, 1170
DpnI GATC 3 cut(s) 341, 428, 912
DpnII GATC 3 cut(s) 339, 426, 910
DraIII CACNNNGTG 1 cut(s) 634
EaeI YGGCCR 2 cut(s) 534, 574
Eam1104I CTCTTC 2 cut(s) 863, 1106
EarI CTCTTC 2 cut(s) 863, 1106
Eco130I CCWWGG 3 cut(s) 678, 865, 1138
Eco24I GRGCYC 1 cut(s) 319
Eco31I GGTCTC 2 cut(s) 49, 892
Eco47I GGWCC 3 cut(s) 156, 247, 444
Eco57I CTGAAG 4 cut(s) 306, 458, 860, 1130
EcoO109I RGGNCCY 3 cut(s) 315, 316, 1132
EcoRI GAATTC 1 cut(s) 1033
EcoRII CCWGG 2 cut(s) 230, 549
EcoT14I CCWWGG 3 cut(s) 678, 865, 1138
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 3 cut(s) 678, 865, 1138
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 7 cut(s) 13, 78, 274, 682, 726, 1098, 1142
FaqI GGGAC 1 cut(s) 568
FatI CATG 7 cut(s) 9, 74, 270, 678, 722, 1094, 1138
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 6 cut(s) 6, 121, 534, 585, 711, 1074
FokI GGATG 1 cut(s) 792
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 6 cut(s) 6, 121, 534, 585, 711, 1074
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 3 cut(s) 69, 280, 282
GluI GCNGC 6 cut(s) 6, 121, 534, 585, 711, 1074
HaeIII GGCC 8 cut(s) 236, 269, 317, 536, 576, 785, 1047, 1133
HapII CCGG 9 cut(s) 174, 245, 276, 573, 591, 719, 741, 816, 954
HgaI GACGC 1 cut(s) 198
HhaI GCGC 3 cut(s) 70, 281, 283
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 7 cut(s) 13, 78, 274, 682, 726, 1098, 1142
Hin6I GCGC 3 cut(s) 68, 279, 281
HinP1I GCGC 3 cut(s) 68, 279, 281
HincII GTYRAC 2 cut(s) 985, 1156
HindII GTYRAC 2 cut(s) 985, 1156
HindIII AAGCTT 2 cut(s) 17, 1086
HinfI GANTC 4 cut(s) 407, 469, 809, 924
HpaI GTTAAC 1 cut(s) 985
HpaII CCGG 9 cut(s) 174, 245, 276, 573, 591, 719, 741, 816, 954
HphI GGTGA 3 cut(s) 85, 382, 431
Hpy166II GTNNAC 4 cut(s) 93, 171, 985, 1156
Hpy188I TCNGA 6 cut(s) 64, 214, 339, 414, 897, 923
Hpy188III TCNNGA 4 cut(s) 184, 613, 661, 1009
Hpy8I GTNNAC 4 cut(s) 93, 171, 985, 1156
Hpy99I CGWCG 4 cut(s) 208, 457, 466, 469
HpyAV CCTTC 8 cut(s) 67, 118, 137, 154, 259, 330, 989, 1114
HpyCH4IV ACGT 3 cut(s) 89, 203, 332
HpyCH4V TGCA 2 cut(s) 120, 713
HpyF10VI GCNNNNNNNGC 6 cut(s) 293, 683, 719, 782, 1070, 1130
HpyF3I CTNAG 7 cut(s) 61, 405, 413, 611, 896, 974, 1170
HpySE526I ACGT 3 cut(s) 89, 203, 332
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 7 cut(s) 13, 78, 274, 682, 726, 1098, 1142
HspAI GCGC 3 cut(s) 68, 279, 281
Ksp22I TGATCA 1 cut(s) 426
KspAI GTTAAC 1 cut(s) 985
Kzo9I GATC 3 cut(s) 339, 426, 910
LmnI GCTCC 3 cut(s) 596, 608, 674
Lsp1109I GCAGC 4 cut(s) 17, 132, 697, 1060
LweI GCATC 3 cut(s) 55, 520, 654
MaeII ACGT 3 cut(s) 89, 203, 332
MaeIII GTNAC 2 cut(s) 380, 388
MalI GATC 3 cut(s) 341, 428, 912
MbiI CCGCTC 1 cut(s) 417
MboI GATC 3 cut(s) 339, 426, 910
MboII GAAGA 8 cut(s) 45, 464, 628, 709, 850, 1042, 1123, 1129
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 2 cut(s) 969, 1033
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 1062
MnlI CCTC 9 cut(s) 146, 158, 312, 481, 743, 763, 866, 1058, 1107
MroXI GAANNNNTTC 1 cut(s) 701
MseI TTAA 3 cut(s) 543, 795, 984
MspI CCGG 9 cut(s) 174, 245, 276, 573, 591, 719, 741, 816, 954
MspR9I CCNGG 7 cut(s) 175, 232, 245, 551, 719, 742, 955
MvaI CCWGG 2 cut(s) 232, 551
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 6 cut(s) 293, 683, 719, 782, 1070, 1130
NciI CCSGG 5 cut(s) 175, 245, 719, 742, 955
NcoI CCATGG 2 cut(s) 678, 1138
NdeII GATC 3 cut(s) 339, 426, 910
NlaIII CATG 7 cut(s) 13, 78, 274, 682, 726, 1098, 1142
NlaIV GGNNCC 9 cut(s) 316, 317, 318, 446, 509, 598, 676, 746, 1134
NmuCI GTSAC 1 cut(s) 388
NsbI TGCGCA 1 cut(s) 69
NspI RCATGY 1 cut(s) 78
NspV TTCGAA 1 cut(s) 993
PasI CCCWGGG 1 cut(s) 550
PauI GCGCGC 1 cut(s) 279
PciI ACATGT 1 cut(s) 74
PcsI WCGNNNNNNNCGW 4 cut(s) 362, 390, 461, 999
PdmI GAANNNNTTC 1 cut(s) 701
PfeI GAWTC 3 cut(s) 469, 809, 924
PkrI GCNGC 6 cut(s) 7, 122, 535, 586, 712, 1075
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PscI ACATGT 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 230, 549
PspGI CCWGG 2 cut(s) 230, 549
PspN4I GGNNCC 9 cut(s) 316, 317, 318, 446, 509, 598, 676, 746, 1134
PspOMI GGGCCC 1 cut(s) 315
PspPI GGNCC 8 cut(s) 156, 234, 247, 315, 316, 444, 783, 1132
PstI CTGCAG 2 cut(s) 122, 715
PteI GCGCGC 1 cut(s) 279
RsaI GTAC 3 cut(s) 194, 692, 1107
RsaNI GTAC 3 cut(s) 193, 691, 1106
SaqAI TTAA 3 cut(s) 543, 795, 984
SatI GCNGC 6 cut(s) 6, 121, 534, 585, 711, 1074
Sau3AI GATC 3 cut(s) 339, 426, 910
Sau96I GGNCC 8 cut(s) 156, 234, 247, 315, 316, 444, 783, 1132
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 7 cut(s) 175, 232, 245, 551, 719, 742, 955
SduI GDGCHC 1 cut(s) 319
SfaNI GCATC 3 cut(s) 55, 520, 654
SfcI CTRYAG 2 cut(s) 118, 711
SfuI TTCGAA 1 cut(s) 993
SinI GGWCC 3 cut(s) 156, 247, 444
Sse9I AATT 2 cut(s) 969, 1033
SsiI CCGC 5 cut(s) 328, 417, 533, 582, 585
StyD4I CCNGG 7 cut(s) 173, 230, 243, 549, 717, 740, 953
StyI CCWWGG 3 cut(s) 678, 865, 1138
TaiI ACGT 3 cut(s) 92, 206, 335
TaqI TCGA 3 cut(s) 993, 1002, 1145
TasI AATT 2 cut(s) 969, 1033
TatI WGTACW 1 cut(s) 1105
TauI GCSGC 2 cut(s) 536, 587
TfiI GAWTC 3 cut(s) 469, 809, 924
Tru1I TTAA 3 cut(s) 543, 795, 984
Tru9I TTAA 3 cut(s) 543, 795, 984
TscAI CASTG 3 cut(s) 158, 316, 639
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 4 cut(s) 5, 120, 710, 1073
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 1026
TspGWI ACGGA 2 cut(s) 384, 537
TspRI CASTG 3 cut(s) 158, 316, 639
VpaK11BI GGWCC 3 cut(s) 156, 247, 444
XapI RAATTY 1 cut(s) 1033
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 2 cut(s) 1023, 1145
XmnI GAANNNNTTC 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.