FvH4_3g00780

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
390818 .. 393138
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00780.t1

Sequence Viewer

Length: 1179 bp
ATGGCAGCCATGCTCAAGCTTCTCATAGCTTTCTGTGCTTTGGTCTCTCTATCTTCCTTCTCAGATGCCCAAACTACATGTTCCAGCTACAATAAGTTCACCAGCAACCGAGTCTTTACTTCCTGCAGCGACCTCCCGTCCCTCAACGCCTTCCTCCACTGGACCTTCAACCAGTCCACCGGGAATCTCAAGATGGCGTACAGGCACACGCCATCCACATCCACCAACTGGGTCGCCTGGGCCATCAACCCGGACCTCACCAAGTCCCAGAAGGCCATGATCGGCGCCCAAGCTCTTGTTGCTATTCCTCAAACCAGCGGGGCTCCCTCACTCCGCATGTCTTCGATCACCGGATACGACACGTCGTTGGCCAACGGGAGCTTGAGTTACGTTGTGACCGACTTGTCGGGTGAGGTTCAGAGCGGAGAGGTGATCATCTACGCCACTTGGACCCTGCCGACGAATACCACGTCGATTCTTCAGGTTTGGCAGGAGGGTCCGGTTGCGAGTGGGACCCCACAAGCACACGCAATTGCTGTGGCTAATCTTAATGCTCAGGGGACTTTGGACTTGCTTTCCGGCACGACTGCCTCTTCCGGTGGAGCCAGCTCCACACTCAAGAAGAAAAACATTCATGCAGTGCTAAATGTTGTGAGTTGGGGTATCTTGATGCCTTTTGGAGCCATGGTAGCAAGGTACTTGAAGACATTCAAGGCTGCAGACCCGGCATGGTTTTACCTCCACGCCGGTTGCCAGACCTCTGCCTATATTGTTGGTGTTGCTGGATGGGCAACTGGTATTAAACTCGGTAGCGATTCTGCTGGTATCCAATATGACACTCACAGAAACATTGGGATTACTCTCTTCTGCATTGGAACACTTCAGGTGTTTGCTTTGCTTCTGAGACCCAACAAGGATCACAAGTTCAGATTCTACTGGAATATCTACCATCATGTGACAGGGTATCTTGTCATCACTCTCAGCATTGTCAACATATTCGAAGGATTTGACATCTTGAAACCAGACAAGAAGTGGAAGAATTCATACATTGGCCTCATCATTGCTTTGGCTGTCCAAGCTGCTTTGTTGGAAGCTTACACATGGTATGTTGTAATGAAGAGGAAGAAGGCTGAAAAGGCGCCCCACGGCGTGAATGGTGTCAACGGCTATGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

393

Amino Acids

42.39

Weight (kDa)

9.33

Isoelectric Point (pI)

26.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 93 - 191 9.9e-24 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 211 - 336 1.5e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012068)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 403
AccB1I GGYRCC 2 cut(s) 284, 1138
AccB7I CCANNNNNTGG 1 cut(s) 228
AccBSI CCGCTC 1 cut(s) 423
AciI CCGC 3 cut(s) 318, 334, 423
AclWI GGATC 1 cut(s) 924
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 1039
AcuI CTGAAG 2 cut(s) 464, 866
AcyI GRCGYC 2 cut(s) 285, 1139
AdeI CACNNNGTG 1 cut(s) 1150
AfaI GTAC 2 cut(s) 200, 698
AfiI CCNNNNNNNGG 1 cut(s) 228
AflIII ACRYGT 2 cut(s) 77, 360
AgsI TTSAA 4 cut(s) 169, 703, 712, 1018
AhdI GACNNNNNGTC 1 cut(s) 136
AjiI CACGTC 2 cut(s) 363, 471
AjnI CCWGG 1 cut(s) 236
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 8 cut(s) 19, 29, 87, 293, 381, 609, 1079, 1094
AluI AGCT 8 cut(s) 19, 29, 87, 293, 381, 609, 1079, 1094
Alw26I GTCTC 2 cut(s) 49, 898
AlwI GGATC 1 cut(s) 924
AoxI GGCC 4 cut(s) 240, 273, 369, 1051
ApeKI GCWGC 4 cut(s) 5, 126, 716, 1079
ApoI RAATTY 1 cut(s) 1039
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 2 cut(s) 287, 1141
AspS9I GGNCC 6 cut(s) 162, 240, 253, 450, 497, 513
AsuC2I CCSGG 3 cut(s) 181, 251, 725
AsuHPI GGTGA 5 cut(s) 91, 250, 340, 422, 442
AsuII TTCGAA 1 cut(s) 999
AvaII GGWCC 5 cut(s) 162, 253, 450, 497, 513
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 2 cut(s) 284, 1138
BanII GRGCYC 1 cut(s) 325
BarI GAAGNNNNNNTAC 2 cut(s) 1028, 1060
BbsI GAAGAC 2 cut(s) 333, 710
BbvI GCAGC 4 cut(s) 17, 138, 703, 1066
BccI CCATC 5 cut(s) 187, 220, 251, 780, 957
BceAI ACGGC 1 cut(s) 1162
BciT130I CCWGG 1 cut(s) 238
BciVI GTATCC 2 cut(s) 347, 836
BclI TGATCA 1 cut(s) 432
BcnI CCSGG 3 cut(s) 181, 251, 725
BcoDI GTCTC 2 cut(s) 49, 898
BfmI CTRYAG 2 cut(s) 124, 717
BfoI RGCGCY 2 cut(s) 288, 1142
BfuI GTATCC 2 cut(s) 347, 836
BisI GCNGC 4 cut(s) 6, 127, 717, 1080
BlsI GCNGC 4 cut(s) 7, 128, 718, 1081
Bme1390I CCNGG 4 cut(s) 181, 238, 251, 725
Bme18I GGWCC 5 cut(s) 162, 253, 450, 497, 513
BmeRI GACNNNNNGTC 1 cut(s) 136
BmgBI CACGTC 2 cut(s) 363, 471
BmgT120I GGNCC 6 cut(s) 162, 240, 253, 450, 497, 513
BmiI GGNNCC 9 cut(s) 286, 324, 452, 498, 514, 515, 604, 682, 1140
BmrFI CCNGG 4 cut(s) 181, 238, 251, 725
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 55, 660
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 2 cut(s) 333, 710
Bpu10I CCTNAGC 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 999
BpuEI CTTGAG 3 cut(s) 173, 403, 602
BpuMI CCSGG 3 cut(s) 181, 251, 725
BsaHI GRCGYC 2 cut(s) 285, 1139
BsaI GGTCTC 2 cut(s) 49, 898
BsaJI CCNNGG 3 cut(s) 237, 684, 1144
BsaWI WCCGGW 3 cut(s) 350, 499, 596
BsaXI ACNNNNNCTCC 4 cut(s) 370, 400, 672, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 746
Bse1I ACTGG 5 cut(s) 164, 172, 233, 799, 941
Bse3DI GCAATG 1 cut(s) 1059
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 3 cut(s) 237, 684, 1144
BseGI GGATG 3 cut(s) 212, 218, 791
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 1059
BseMII CTCAG 4 cut(s) 75, 569, 893, 994
BseNI ACTGG 5 cut(s) 164, 172, 233, 799, 941
BseXI GCAGC 4 cut(s) 17, 138, 703, 1066
BshFI GGCC 4 cut(s) 242, 275, 371, 1053
BshNI GGYRCC 2 cut(s) 284, 1138
BsiSI CCGG 8 cut(s) 180, 251, 351, 500, 579, 597, 725, 747
BslFI GGGAC 4 cut(s) 124, 250, 526, 574
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 49, 898
BsmFI GGGAC 4 cut(s) 124, 250, 526, 574
BsnI GGCC 4 cut(s) 242, 275, 371, 1053
Bso31I GGTCTC 2 cut(s) 49, 898
Bsp119I TTCGAA 1 cut(s) 999
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 4 cut(s) 279, 345, 432, 916
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 3 cut(s) 318, 334, 423
BspANI GGCC 4 cut(s) 242, 275, 371, 1053
BspCNI CTCAG 4 cut(s) 74, 568, 894, 993
BspLI GGNNCC 9 cut(s) 286, 324, 452, 498, 514, 515, 604, 682, 1140
BspMAI CTGCAG 2 cut(s) 128, 721
BspPI GGATC 1 cut(s) 924
BspT104I TTCGAA 1 cut(s) 999
BspT107I GGYRCC 2 cut(s) 284, 1138
BspTNI GGTCTC 2 cut(s) 49, 898
BsrBI CCGCTC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 1059
BsrFI RCCGGY 1 cut(s) 746
BsrI ACTGG 5 cut(s) 164, 172, 233, 799, 941
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 3 cut(s) 237, 684, 1144
BssMI GATC 4 cut(s) 279, 345, 432, 916
BssNI GRCGYC 2 cut(s) 285, 1139
BssT1I CCWWGG 1 cut(s) 684
Bst2UI CCWGG 1 cut(s) 238
Bst6I CTCTTC 3 cut(s) 598, 869, 1112
BstACI GRCGYC 2 cut(s) 285, 1139
BstBI TTCGAA 1 cut(s) 999
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 5 cut(s) 61, 555, 902, 980, 1176
BstDSI CCRYGG 2 cut(s) 684, 1144
BstF5I GGATG 3 cut(s) 212, 218, 791
BstH2I RGCGCY 2 cut(s) 288, 1142
BstHHI GCGC 2 cut(s) 287, 1141
BstKTI GATC 4 cut(s) 282, 348, 435, 919
BstMAI GTCTC 2 cut(s) 49, 898
BstMBI GATC 4 cut(s) 279, 345, 432, 916
BstMWI GCNNNNNNNGC 7 cut(s) 35, 299, 689, 725, 788, 1076, 1136
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 2 cut(s) 81, 340
BstSCI CCNGG 4 cut(s) 179, 236, 249, 723
BstSFI CTRYAG 2 cut(s) 124, 717
BstV1I GCAGC 4 cut(s) 17, 138, 703, 1066
BstV2I GAAGAC 2 cut(s) 333, 710
BsuI GTATCC 2 cut(s) 347, 836
BsuRI GGCC 4 cut(s) 242, 275, 371, 1053
BtgI CCRYGG 2 cut(s) 684, 1144
BtrI CACGTC 2 cut(s) 363, 471
BtsCI GGATG 3 cut(s) 212, 218, 791
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 157, 645
Cac8I GCNNGC 1 cut(s) 607
CfoI GCGC 2 cut(s) 287, 1141
Cfr10I RCCGGY 1 cut(s) 746
Cfr13I GGNCC 6 cut(s) 162, 240, 253, 450, 497, 513
Csp6I GTAC 2 cut(s) 199, 697
CspCI CAANNNNNGTGG 4 cut(s) 519, 554, 731, 766
CviAII CATG 9 cut(s) 10, 78, 277, 337, 635, 685, 729, 953, 1101
CviQI GTAC 2 cut(s) 199, 697
DdeI CTNAG 5 cut(s) 61, 555, 902, 980, 1176
DinI GGCGCC 2 cut(s) 286, 1140
DpnI GATC 4 cut(s) 281, 347, 434, 918
DpnII GATC 4 cut(s) 279, 345, 432, 916
DraIII CACNNNGTG 1 cut(s) 1150
DrdI GACNNNNNNGTC 1 cut(s) 403
DriI GACNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 3 cut(s) 598, 869, 1112
Eam1105I GACNNNNNGTC 1 cut(s) 136
EarI CTCTTC 3 cut(s) 598, 869, 1112
Eco130I CCWWGG 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 2 cut(s) 49, 898
Eco47I GGWCC 5 cut(s) 162, 253, 450, 497, 513
Eco57I CTGAAG 2 cut(s) 464, 866
EcoO109I RGGNCCY 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 684
EcoT38I GRGCYC 1 cut(s) 325
EgeI GGCGCC 2 cut(s) 286, 1140
EheI GGCGCC 2 cut(s) 286, 1140
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 9 cut(s) 13, 81, 280, 340, 638, 688, 732, 956, 1104
FaqI GGGAC 4 cut(s) 124, 250, 526, 574
FatI CATG 9 cut(s) 9, 77, 276, 336, 634, 684, 728, 952, 1100
FauI CCCGC 1 cut(s) 311
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 6, 127, 717, 1080
FokI GGATG 3 cut(s) 199, 205, 798
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 4 cut(s) 6, 127, 717, 1080
GlaI GCGC 2 cut(s) 286, 1140
GluI GCNGC 4 cut(s) 6, 127, 717, 1080
HaeII RGCGCY 2 cut(s) 288, 1142
HaeIII GGCC 4 cut(s) 242, 275, 371, 1053
HapII CCGG 8 cut(s) 180, 251, 351, 500, 579, 597, 725, 747
HhaI GCGC 2 cut(s) 287, 1141
Hin1I GRCGYC 2 cut(s) 285, 1139
Hin1II CATG 9 cut(s) 13, 81, 280, 340, 638, 688, 732, 956, 1104
Hin6I GCGC 2 cut(s) 285, 1139
HinP1I GCGC 2 cut(s) 285, 1139
HincII GTYRAC 2 cut(s) 991, 1162
HindII GTYRAC 2 cut(s) 991, 1162
HindIII AAGCTT 2 cut(s) 17, 1092
HinfI GANTC 5 cut(s) 111, 184, 475, 815, 930
HpaII CCGG 8 cut(s) 180, 251, 351, 500, 579, 597, 725, 747
HphI GGTGA 5 cut(s) 91, 250, 340, 422, 442
Hpy166II GTNNAC 4 cut(s) 99, 177, 991, 1162
Hpy188I TCNGA 4 cut(s) 64, 420, 903, 929
Hpy188III TCNNGA 4 cut(s) 190, 619, 667, 1015
Hpy8I GTNNAC 4 cut(s) 99, 177, 991, 1162
Hpy99I CGWCG 3 cut(s) 367, 463, 475
HpyAV CCTTC 6 cut(s) 67, 160, 175, 265, 995, 1120
HpyCH4IV ACGT 3 cut(s) 362, 390, 470
HpyCH4V TGCA 4 cut(s) 126, 638, 719, 870
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 299, 689, 725, 788, 1076, 1136
HpyF3I CTNAG 5 cut(s) 61, 555, 902, 980, 1176
HpySE526I ACGT 3 cut(s) 362, 390, 470
Hsp92I GRCGYC 2 cut(s) 285, 1139
Hsp92II CATG 9 cut(s) 13, 81, 280, 340, 638, 688, 732, 956, 1104
HspAI GCGC 2 cut(s) 285, 1139
KasI GGCGCC 2 cut(s) 284, 1138
KflI GGGWCCC 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 4 cut(s) 279, 345, 432, 916
LmnI GCTCC 5 cut(s) 328, 378, 602, 614, 680
Lsp1109I GCAGC 4 cut(s) 17, 138, 703, 1066
LweI GCATC 2 cut(s) 55, 660
MaeII ACGT 3 cut(s) 362, 390, 470
MaeIII GTNAC 3 cut(s) 386, 394, 955
MalI GATC 4 cut(s) 281, 347, 434, 918
MbiI CCGCTC 1 cut(s) 423
MboI GATC 4 cut(s) 279, 345, 432, 916
MfeI CAATTG 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 325
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 2 cut(s) 531, 1039
MluNI TGGCCA 1 cut(s) 371
Mly113I GGCGCC 2 cut(s) 285, 1139
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 1068
Mox20I TGGCCA 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 707
MscI TGGCCA 1 cut(s) 371
MseI TTAA 2 cut(s) 549, 801
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 8 cut(s) 180, 251, 351, 500, 579, 597, 725, 747
MspR9I CCNGG 4 cut(s) 181, 238, 251, 725
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 7 cut(s) 35, 299, 689, 725, 788, 1076, 1136
NarI GGCGCC 2 cut(s) 285, 1139
NciI CCSGG 3 cut(s) 181, 251, 725
NcoI CCATGG 1 cut(s) 684
NdeII GATC 4 cut(s) 279, 345, 432, 916
NlaIII CATG 9 cut(s) 13, 81, 280, 340, 638, 688, 732, 956, 1104
NlaIV GGNNCC 9 cut(s) 286, 324, 452, 498, 514, 515, 604, 682, 1140
NmuCI GTSAC 2 cut(s) 394, 955
NspI RCATGY 2 cut(s) 81, 340
NspV TTCGAA 1 cut(s) 999
PciI ACATGT 1 cut(s) 77
PcsI WCGNNNNNNNCGW 2 cut(s) 396, 467
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 4 cut(s) 184, 475, 815, 930
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 4 cut(s) 7, 128, 718, 1081
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 2 cut(s) 288, 1142
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 513
PscI ACATGT 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 9 cut(s) 286, 324, 452, 498, 514, 515, 604, 682, 1140
PspPI GGNCC 6 cut(s) 162, 240, 253, 450, 497, 513
PspPPI RGGWCCY 1 cut(s) 513
PstI CTGCAG 2 cut(s) 128, 721
RsaI GTAC 2 cut(s) 200, 698
RsaNI GTAC 2 cut(s) 199, 697
SaqAI TTAA 2 cut(s) 549, 801
SatI GCNGC 4 cut(s) 6, 127, 717, 1080
Sau3AI GATC 4 cut(s) 279, 345, 432, 916
Sau96I GGNCC 6 cut(s) 162, 240, 253, 450, 497, 513
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 4 cut(s) 181, 238, 251, 725
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 2 cut(s) 55, 660
SfcI CTRYAG 2 cut(s) 124, 717
SfoI GGCGCC 2 cut(s) 286, 1140
SfuI TTCGAA 1 cut(s) 999
SinI GGWCC 5 cut(s) 162, 253, 450, 497, 513
SmlI CTYRAG 4 cut(s) 14, 188, 382, 617
SmoI CTYRAG 4 cut(s) 14, 188, 382, 617
Sse9I AATT 2 cut(s) 531, 1039
SsiI CCGC 3 cut(s) 318, 334, 423
SspDI GGCGCC 2 cut(s) 284, 1138
StyD4I CCNGG 4 cut(s) 179, 236, 249, 723
StyI CCWWGG 1 cut(s) 684
TaiI ACGT 3 cut(s) 365, 393, 473
TaqI TCGA 3 cut(s) 344, 473, 999
TaqII GACCGA 1 cut(s) 413
TasI AATT 2 cut(s) 531, 1039
TfiI GAWTC 4 cut(s) 184, 475, 815, 930
Tru1I TTAA 2 cut(s) 549, 801
Tru9I TTAA 2 cut(s) 549, 801
TscAI CASTG 2 cut(s) 164, 645
TseFI GTSAC 2 cut(s) 394, 955
TseI GCWGC 4 cut(s) 5, 126, 716, 1079
Tsp45I GTSAC 2 cut(s) 394, 955
TspDTI ATGAA 3 cut(s) 623, 1032, 1130
TspRI CASTG 2 cut(s) 164, 645
Van91I CCANNNNNTGG 1 cut(s) 228
VpaK11BI GGWCC 5 cut(s) 162, 253, 450, 497, 513
XapI RAATTY 1 cut(s) 1039
XceI RCATGY 2 cut(s) 81, 340
XcmI CCANNNNNNNNNTGG 2 cut(s) 1029, 1151
XmnI GAANNNNTTC 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.