Rroxscaffold_1G00075260

Auxin-induced in root cultures protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
96064337 .. 96066395
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00075260.1

Sequence Viewer

Length: 1104 bp
ATGGCAGCCATGTTCAAGCTTCTCACAGCTTTGTGTGTTTTTGCCTCTCTATCTTCCTTCTCAGATGCGCAAACATGTAAGAACTACACGTTCACCAGCAACCAAGCATTCGCTTCCTGCAACGACCTTCAGTACCTCAACGCCTCCTTCCACTGGACCTTTGACCAGTCCACCGGGAAGCTCCAGATGGCTTACAGGCACACGTCGTCGTCAGCCACCAACTGGGTCGCCTGGGCCATCAACCCGGACCTGACCCAGACCCAGAAGGCCATGATCGGCGCGCAAGCTCTTGTTGCCATTCCTCAAACCAGTGGAGCGCCCTCAGTCCGCACGTCTTCGATCGAAGGATACAACACGAATTTGGAGAATGGAACTTTGAGATACGATGTGACCGGTTTATCGGCGGAGTCTCAGAACGGAGGGTCCCGTTGTGAGTGGGACCCCGAACAACACGGAACCGCTGCGGCCAATCTTAATGCCGCCGGCACTTTGGACTTGCTTTCCGGCCAGGCCGCCTCTTCCGGTGGTGCCGGCTCCACACTCAGGAAGAAAAACATTCACGCAGTGCTAAATGTAGTGAGTTGGGGCATCTTGATGCCTGTAGGAGCCATGGTAGCAAGGTACTTGAAGACATTCAAGGCTGCAGACCCGGCATGGTTTTACCTCCACGCCGGTTGCCAGACCTCTGCTTATATTGTTGGTGTTGCTGGATGGGCCACAGGTATTAAGCTCGGTAGCGATTCTGCTGGTATCCAATATGACACTCACAGAAACATTGGGATTACCCTCTTCTGCCTTGGAACACTTCAGGTGTTTGCTTTGCTTCTGAGACCCAACAAGGATCACAAGTTCAGATTCTACTGGAATATCTACCATCATTTGACCGGGTATCTTGTCATAATTCTCAGCGTTGTTAACATATTCGAAGGGTTCGACATCTTGAAACCAAACAAAAACTGGAAGAATTCATACATTGGCCTCATCATTGCTTTGGCTGTCCAAGCTGCTTTGTTGGAAGCTTACACATGGTATGTTGTACTGAAGAGGAAGAAGGCTGAAAAGGCGCCCCACGGCTCGAATGGTGTCAACGGCTATGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

367

Amino Acids

39.82

Weight (kDa)

9.09

Isoelectric Point (pI)

26.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 91 - 140 1.3e-06 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 186 - 311 5.6e-08 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012068)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
AccB1I GGYRCC 2 cut(s) 527, 1063
AccB7I CCANNNNNTGG 1 cut(s) 222
AccII CGCG 1 cut(s) 281
AciI CCGC 6 cut(s) 328, 404, 459, 464, 480, 513
AclWI GGATC 1 cut(s) 849
AcoI YGGCCR 2 cut(s) 465, 505
AcsI RAATTY 2 cut(s) 358, 964
AcuI CTGAAG 3 cut(s) 113, 791, 1061
AcyI GRCGYC 1 cut(s) 1064
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 3 cut(s) 134, 623, 1038
AfiI CCNNNNNNNGG 3 cut(s) 153, 222, 543
AflIII ACRYGT 3 cut(s) 74, 87, 201
AgeI ACCGGT 1 cut(s) 392
AgsI TTSAA 4 cut(s) 16, 628, 637, 943
AjiI CACGTC 2 cut(s) 204, 333
AjnI CCWGG 2 cut(s) 230, 507
AloI GAACNNNNNNTCC 4 cut(s) 407, 439, 833, 865
AluBI AGCT 7 cut(s) 19, 29, 181, 287, 730, 1004, 1019
AluI AGCT 7 cut(s) 19, 29, 181, 287, 730, 1004, 1019
Alw26I GTCTC 2 cut(s) 414, 823
AlwI GGATC 1 cut(s) 849
AoxI GGCC 7 cut(s) 234, 267, 465, 505, 510, 714, 976
ApeKI GCWGC 4 cut(s) 5, 461, 641, 1004
ApoI RAATTY 2 cut(s) 358, 964
AsiGI ACCGGT 1 cut(s) 392
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 5 cut(s) 70, 281, 283, 319, 1066
AspS9I GGNCC 6 cut(s) 156, 234, 247, 423, 439, 714
AsuC2I CCSGG 4 cut(s) 175, 245, 650, 886
AsuHPI GGTGA 1 cut(s) 85
AsuII TTCGAA 1 cut(s) 924
AvaII GGWCC 4 cut(s) 156, 247, 423, 439
BanI GGYRCC 2 cut(s) 527, 1063
BarI GAAGNNNNNNTAC 2 cut(s) 953, 985
BbsI GAAGAC 2 cut(s) 327, 635
BbvI GCAGC 4 cut(s) 17, 448, 628, 991
BccI CCATC 4 cut(s) 181, 245, 705, 882
BceAI ACGGC 1 cut(s) 1087
BciT130I CCWGG 2 cut(s) 232, 509
BciVI GTATCC 2 cut(s) 341, 761
BcnI CCSGG 4 cut(s) 175, 245, 650, 886
BcoDI GTCTC 2 cut(s) 414, 823
BfmI CTRYAG 2 cut(s) 600, 642
BfoI RGCGCY 2 cut(s) 320, 1067
BfuI GTATCC 2 cut(s) 341, 761
BisI GCNGC 7 cut(s) 6, 462, 465, 480, 513, 642, 1005
BlsI GCNGC 7 cut(s) 7, 463, 466, 481, 514, 643, 1006
Bme1390I CCNGG 6 cut(s) 175, 232, 245, 509, 650, 886
Bme18I GGWCC 4 cut(s) 156, 247, 423, 439
BmgBI CACGTC 2 cut(s) 204, 333
BmgT120I GGNCC 6 cut(s) 156, 234, 247, 423, 439, 714
BmiI GGNNCC 9 cut(s) 424, 425, 440, 441, 457, 529, 535, 607, 1065
BmrFI CCNGG 6 cut(s) 175, 232, 245, 509, 650, 886
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 3 cut(s) 55, 585, 597
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 2 cut(s) 327, 635
BpmI CTGGAG 1 cut(s) 167
Bpu14I TTCGAA 1 cut(s) 924
BpuMI CCSGG 4 cut(s) 175, 245, 650, 886
BsaHI GRCGYC 1 cut(s) 1064
BsaI GGTCTC 1 cut(s) 823
BsaJI CCNNGG 4 cut(s) 231, 609, 796, 1069
BsaWI WCCGGW 2 cut(s) 392, 521
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 222, 543
Bse118I RCCGGY 4 cut(s) 392, 482, 530, 671
Bse1I ACTGG 6 cut(s) 158, 166, 227, 309, 866, 962
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 2 cut(s) 232, 509
BseDI CCNNGG 4 cut(s) 231, 609, 796, 1069
BseGI GGATG 1 cut(s) 716
BseLI CCNNNNNNNGG 3 cut(s) 153, 222, 543
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 6 cut(s) 75, 336, 425, 556, 818, 919
BseNI ACTGG 6 cut(s) 158, 166, 227, 309, 866, 962
BsePI GCGCGC 1 cut(s) 279
BseXI GCAGC 4 cut(s) 17, 448, 628, 991
Bsh1236I CGCG 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 7 cut(s) 236, 269, 467, 507, 512, 716, 978
BshNI GGYRCC 2 cut(s) 527, 1063
BshTI ACCGGT 1 cut(s) 392
BsiEI CGRYCG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 409, 452
BslI CCNNNNNNNGG 3 cut(s) 153, 222, 543
BsmAI GTCTC 2 cut(s) 414, 823
BsmFI GGGAC 2 cut(s) 409, 452
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 7 cut(s) 236, 269, 467, 507, 512, 716, 978
Bso31I GGTCTC 1 cut(s) 823
Bsp119I TTCGAA 1 cut(s) 924
Bsp143I GATC 3 cut(s) 273, 339, 841
Bsp19I CCATGG 1 cut(s) 609
BspACI CCGC 6 cut(s) 328, 404, 459, 464, 480, 513
BspANI GGCC 7 cut(s) 236, 269, 467, 507, 512, 716, 978
BspCNI CTCAG 6 cut(s) 74, 335, 424, 555, 819, 918
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 9 cut(s) 424, 425, 440, 441, 457, 529, 535, 607, 1065
BspMAI CTGCAG 1 cut(s) 646
BspPI GGATC 1 cut(s) 849
BspT104I TTCGAA 1 cut(s) 924
BspT107I GGYRCC 2 cut(s) 527, 1063
BspTNI GGTCTC 1 cut(s) 823
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 4 cut(s) 392, 482, 530, 671
BsrI ACTGG 6 cut(s) 158, 166, 227, 309, 866, 962
BssAI RCCGGY 4 cut(s) 392, 482, 530, 671
BssECI CCNNGG 4 cut(s) 231, 609, 796, 1069
BssHII GCGCGC 1 cut(s) 279
BssMI GATC 3 cut(s) 273, 339, 841
BssNI GRCGYC 1 cut(s) 1064
BssT1I CCWWGG 2 cut(s) 609, 796
Bst2UI CCWGG 2 cut(s) 232, 509
Bst6I CTCTTC 3 cut(s) 523, 794, 1037
BstACI GRCGYC 1 cut(s) 1064
BstBI TTCGAA 1 cut(s) 924
BstC8I GCNNGC 4 cut(s) 281, 285, 484, 532
BstDEI CTNAG 7 cut(s) 61, 322, 411, 542, 827, 905, 1101
BstDSI CCRYGG 2 cut(s) 609, 1069
BstF5I GGATG 1 cut(s) 716
BstFNI CGCG 1 cut(s) 281
BstH2I RGCGCY 2 cut(s) 320, 1067
BstHHI GCGC 5 cut(s) 70, 281, 283, 319, 1066
BstKTI GATC 3 cut(s) 276, 342, 844
BstMAI GTCTC 2 cut(s) 414, 823
BstMBI GATC 3 cut(s) 273, 339, 841
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 6 cut(s) 293, 614, 650, 713, 1001, 1061
BstNI CCWGG 2 cut(s) 232, 509
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 6 cut(s) 173, 230, 243, 507, 648, 884
BstSFI CTRYAG 2 cut(s) 600, 642
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 4 cut(s) 17, 448, 628, 991
BstV2I GAAGAC 2 cut(s) 327, 635
BsuI GTATCC 2 cut(s) 341, 761
BsuRI GGCC 7 cut(s) 236, 269, 467, 507, 512, 716, 978
BtgI CCRYGG 2 cut(s) 609, 1069
BtrI CACGTC 2 cut(s) 204, 333
BtsCI GGATG 1 cut(s) 716
BtsI GCAGTG 1 cut(s) 570
BtsIMutI CAGTG 3 cut(s) 151, 316, 570
Cac8I GCNNGC 4 cut(s) 281, 285, 484, 532
CfoI GCGC 5 cut(s) 70, 281, 283, 319, 1066
Cfr10I RCCGGY 4 cut(s) 392, 482, 530, 671
Cfr13I GGNCC 6 cut(s) 156, 234, 247, 423, 439, 714
Csp6I GTAC 3 cut(s) 133, 622, 1037
CspAI ACCGGT 1 cut(s) 392
CspCI CAANNNNNGTGG 2 cut(s) 656, 691
CviAII CATG 6 cut(s) 10, 75, 271, 610, 654, 1026
CviQI GTAC 3 cut(s) 133, 622, 1037
DdeI CTNAG 7 cut(s) 61, 322, 411, 542, 827, 905, 1101
DinI GGCGCC 1 cut(s) 1065
DpnI GATC 3 cut(s) 275, 341, 843
DpnII GATC 3 cut(s) 273, 339, 841
DraIII CACNNNGTG 1 cut(s) 565
EaeI YGGCCR 2 cut(s) 465, 505
Eam1104I CTCTTC 3 cut(s) 523, 794, 1037
EarI CTCTTC 3 cut(s) 523, 794, 1037
EciI GGCGGA 1 cut(s) 419
Eco130I CCWWGG 2 cut(s) 609, 796
Eco31I GGTCTC 1 cut(s) 823
Eco47I GGWCC 4 cut(s) 156, 247, 423, 439
Eco57I CTGAAG 3 cut(s) 113, 791, 1061
EcoO109I RGGNCCY 2 cut(s) 423, 439
EcoRI GAATTC 1 cut(s) 964
EcoRII CCWGG 2 cut(s) 230, 507
EcoT14I CCWWGG 2 cut(s) 609, 796
EgeI GGCGCC 1 cut(s) 1065
EheI GGCGCC 1 cut(s) 1065
ErhI CCWWGG 2 cut(s) 609, 796
FaeI CATG 6 cut(s) 13, 78, 274, 613, 657, 1029
FaqI GGGAC 2 cut(s) 409, 452
FatI CATG 6 cut(s) 9, 74, 270, 609, 653, 1025
Fnu4HI GCNGC 7 cut(s) 6, 462, 465, 480, 513, 642, 1005
FokI GGATG 1 cut(s) 723
Fsp4HI GCNGC 7 cut(s) 6, 462, 465, 480, 513, 642, 1005
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 5 cut(s) 69, 280, 282, 318, 1065
GluI GCNGC 7 cut(s) 6, 462, 465, 480, 513, 642, 1005
GsuI CTGGAG 1 cut(s) 167
HaeII RGCGCY 2 cut(s) 320, 1067
HaeIII GGCC 7 cut(s) 236, 269, 467, 507, 512, 716, 978
HhaI GCGC 5 cut(s) 70, 281, 283, 319, 1066
Hin1I GRCGYC 1 cut(s) 1064
Hin1II CATG 6 cut(s) 13, 78, 274, 613, 657, 1029
Hin6I GCGC 5 cut(s) 68, 279, 281, 317, 1064
HinP1I GCGC 5 cut(s) 68, 279, 281, 317, 1064
HincII GTYRAC 2 cut(s) 916, 1087
HindII GTYRAC 2 cut(s) 916, 1087
HindIII AAGCTT 2 cut(s) 17, 1017
HinfI GANTC 3 cut(s) 407, 740, 855
HpaI GTTAAC 1 cut(s) 916
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 4 cut(s) 93, 171, 916, 1087
Hpy188I TCNGA 4 cut(s) 64, 414, 828, 854
Hpy188III TCNNGA 4 cut(s) 184, 544, 592, 940
Hpy8I GTNNAC 4 cut(s) 93, 171, 916, 1087
Hpy99I CGWCG 2 cut(s) 208, 211
HpyAV CCTTC 7 cut(s) 67, 137, 157, 259, 338, 920, 1045
HpyCH4IV ACGT 3 cut(s) 89, 203, 332
HpyCH4V TGCA 2 cut(s) 120, 644
HpyF10VI GCNNNNNNNGC 6 cut(s) 293, 614, 650, 713, 1001, 1061
HpyF3I CTNAG 7 cut(s) 61, 322, 411, 542, 827, 905, 1101
HpySE526I ACGT 3 cut(s) 89, 203, 332
Hsp92I GRCGYC 1 cut(s) 1064
Hsp92II CATG 6 cut(s) 13, 78, 274, 613, 657, 1029
HspAI GCGC 5 cut(s) 68, 279, 281, 317, 1064
KasI GGCGCC 1 cut(s) 1063
KflI GGGWCCC 2 cut(s) 423, 439
KroI GCCGGC 2 cut(s) 482, 530
KroNI GCCGGC 2 cut(s) 484, 532
KspAI GTTAAC 1 cut(s) 916
Kzo9I GATC 3 cut(s) 273, 339, 841
LmnI GCTCC 4 cut(s) 186, 314, 539, 605
Lsp1109I GCAGC 4 cut(s) 17, 448, 628, 991
LweI GCATC 3 cut(s) 55, 585, 597
MaeII ACGT 3 cut(s) 89, 203, 332
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 275, 341, 843
MboI GATC 3 cut(s) 273, 339, 841
MboII GAAGA 9 cut(s) 45, 327, 510, 559, 640, 781, 973, 1054, 1060
MluCI AATT 3 cut(s) 358, 900, 964
Mly113I GGCGCC 1 cut(s) 1064
MlyI GAGTC 1 cut(s) 416
MmeI TCCRAC 1 cut(s) 993
MroNI GCCGGC 2 cut(s) 482, 530
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 3 cut(s) 474, 726, 915
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 461
MspR9I CCNGG 6 cut(s) 175, 232, 245, 509, 650, 886
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 2 cut(s) 232, 509
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 6 cut(s) 293, 614, 650, 713, 1001, 1061
NaeI GCCGGC 2 cut(s) 484, 532
NarI GGCGCC 1 cut(s) 1064
NciI CCSGG 4 cut(s) 175, 245, 650, 886
NcoI CCATGG 1 cut(s) 609
NdeII GATC 3 cut(s) 273, 339, 841
NgoMIV GCCGGC 2 cut(s) 482, 530
NlaIII CATG 6 cut(s) 13, 78, 274, 613, 657, 1029
NlaIV GGNNCC 9 cut(s) 424, 425, 440, 441, 457, 529, 535, 607, 1065
NmuCI GTSAC 1 cut(s) 388
NsbI TGCGCA 1 cut(s) 69
NspI RCATGY 1 cut(s) 78
NspV TTCGAA 1 cut(s) 924
PauI GCGCGC 1 cut(s) 279
PciI ACATGT 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 930
PctI GAATGC 1 cut(s) 107
PdiI GCCGGC 2 cut(s) 484, 532
PdmI GAANNNNTTC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 740, 855
PflMI CCANNNNNTGG 1 cut(s) 222
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 7 cut(s) 7, 463, 466, 481, 514, 643, 1006
Ple19I CGATCG 1 cut(s) 342
PleI GAGTC 1 cut(s) 415
PluTI GGCGCC 1 cut(s) 1067
PpsI GAGTC 1 cut(s) 415
PpuMI RGGWCCY 2 cut(s) 423, 439
PscI ACATGT 1 cut(s) 74
Psp5II RGGWCCY 2 cut(s) 423, 439
Psp6I CCWGG 2 cut(s) 230, 507
PspGI CCWGG 2 cut(s) 230, 507
PspN4I GGNNCC 9 cut(s) 424, 425, 440, 441, 457, 529, 535, 607, 1065
PspPI GGNCC 6 cut(s) 156, 234, 247, 423, 439, 714
PspPPI RGGWCCY 2 cut(s) 423, 439
PstI CTGCAG 1 cut(s) 646
PteI GCGCGC 1 cut(s) 279
PvuI CGATCG 1 cut(s) 342
RsaI GTAC 3 cut(s) 134, 623, 1038
RsaNI GTAC 3 cut(s) 133, 622, 1037
RseI CAYNNNNRTG 1 cut(s) 593
SaqAI TTAA 3 cut(s) 474, 726, 915
SatI GCNGC 7 cut(s) 6, 462, 465, 480, 513, 642, 1005
Sau3AI GATC 3 cut(s) 273, 339, 841
Sau96I GGNCC 6 cut(s) 156, 234, 247, 423, 439, 714
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 6 cut(s) 175, 232, 245, 509, 650, 886
SfaNI GCATC 3 cut(s) 55, 585, 597
SfcI CTRYAG 2 cut(s) 600, 642
SfoI GGCGCC 1 cut(s) 1065
SfuI TTCGAA 1 cut(s) 924
SinI GGWCC 4 cut(s) 156, 247, 423, 439
SmiMI CAYNNNNRTG 1 cut(s) 593
Sse9I AATT 3 cut(s) 358, 900, 964
SsiI CCGC 6 cut(s) 328, 404, 459, 464, 480, 513
SspDI GGCGCC 1 cut(s) 1063
StyD4I CCNGG 6 cut(s) 173, 230, 243, 507, 648, 884
StyI CCWWGG 2 cut(s) 609, 796
TaiI ACGT 3 cut(s) 92, 206, 335
TaqI TCGA 5 cut(s) 338, 342, 924, 933, 1076
TasI AATT 3 cut(s) 358, 900, 964
TatI WGTACW 1 cut(s) 1036
TauI GCSGC 3 cut(s) 467, 482, 515
TfiI GAWTC 2 cut(s) 740, 855
Tru1I TTAA 3 cut(s) 474, 726, 915
Tru9I TTAA 3 cut(s) 474, 726, 915
TscAI CASTG 3 cut(s) 158, 316, 570
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 4 cut(s) 5, 461, 641, 1004
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 1 cut(s) 957
TspGWI ACGGA 2 cut(s) 432, 468
TspRI CASTG 3 cut(s) 158, 316, 570
Van91I CCANNNNNTGG 1 cut(s) 222
VpaK11BI GGWCC 4 cut(s) 156, 247, 423, 439
XapI RAATTY 2 cut(s) 358, 964
XceI RCATGY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 2 cut(s) 954, 1076
XmnI GAANNNNTTC 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.