AT5G47530

Cytochrome b561 and DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012068
Physical Location & Seq
Forward (+)
19281374 .. 19283061
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47530.1

Sequence Viewer

Length: 1188 bp
ATGGCCATATCCTCAAATCTTCTCCTTTGTCTCTCTCTTTTCATTTTCATCATCACCAAATCCGCCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTGAGTCTTGCAACGACCTACCTGTTCTTGATTCCTTCCTCCACTACACTTACGATTCTTCTTCAGGCAATCTCCAAATCGCGTATCGCCACACAAAGCTCACCCCCGGGAAATGGGTGGCATGGGCCGTGAATCCCACATCTACTGGCATGGTCGGAGCTCAAGCCATTGTGGCTTATCCACAATCAGACGGCACCGTTAGGGCTTATACGTCACCCATCAGTAGCTACCAAACGAGTCTCCTAGAAGCTGAGCTGAGTTTCAACGTCTCTCAGTTGTCTGCCACTTACCAAAACAACGAGATGGTCATCTACGCAATTCTGAATCTTCCACTTGCGAATGGTGGAATCATTAACACTGTGTGGCAAGATGGGTCACTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCTGGCAACAATGTTCGTTCTGTTTCTACTCTTAACCTTGTCTCTGGTGCATCTGGATCCACCTCTACCGGAGCAGGAGGAGCTTCCAAGCTACGCAAACGCAACATACATGGAATATTGAACGGTGTGAGCTGGGGTATAATGATGCCAATAGGAGCAATCATTGCTCGCTACTTGAAAGTCTCAAAATCAGCAGATCCTGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCATTGGTGTTGCCGGTTGGGCGACCGGTCTCAAACTGGGCAACGAATCAGCCGGGATTCAGTTTACCTTTCACCGTGCTGTTGGGATCGCTCTCTTCTGCCTCGCAACAATTCAGGTGTTTGCAATGTTTTTGAGACCCAAACCAGAGCACAAGTACAGAGTCTACTGGAACATTTATCACCACACTGTAGGCTATTCAGTGATCATTCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACATCCTGAGCCCTGAGAAGCAGTGGAGAAACGCTTACACCGCCATAATCGTAGTACTAGGTATAGTCGCGGTTGTGCTCGAAGGGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAAGCAGAGGCATCTGCGAAAACAAGTCAACGAGTAGGCAACGATGGTCGGTCTCTATACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

395

Amino Acids

43.0

Weight (kDa)

9.53

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 88 - 187 1.1e-25 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 217 - 335 1.1e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17280 AT5G47530
fragaria_vesca FvH4_3g00780 FvH4_3g00780
malus_domestica MD05G1359500.v1.1 MD10G1335000.v1.1
prunus_persica Prupe.4G008600_v2.0.a1
pyrus_communis pycom10g28480
rosa_chinensis RchiOBHm_Chr5g0001021
rosa_laevigata RLG00000030914
rosa_multiflora Rmu_sc0000255.1_g000030 Rmu_sc0004189.1_g000001
rosa_roxburghii Rroxscaffold_1G00075260
rosa_rugosa Rorug04G0389000
rosa_samantha Rh5AG008200 Rh5BG010300 Rh5CG008900 Rh5DG009000
rosa_wichuraiana Rw5G000840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 524
AccI GTMKAC 1 cut(s) 930
AccII CGCG 2 cut(s) 194, 1076
AciI CCGC 4 cut(s) 63, 980, 1047, 1076
AclI AACGTT 1 cut(s) 990
AclWI GGATC 4 cut(s) 573, 586, 713, 860
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 474
AfaI GTAC 2 cut(s) 923, 1062
AfiI CCNNNNNNNGG 2 cut(s) 225, 524
AflIII ACRYGT 1 cut(s) 1182
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 3 cut(s) 376, 643, 700
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 8 cut(s) 211, 272, 339, 362, 367, 605, 613, 654
AluI AGCT 8 cut(s) 211, 272, 339, 362, 367, 605, 613, 654
Alw21I GWGCWC 3 cut(s) 274, 918, 1086
Alw26I GTCTC 9 cut(s) 35, 113, 356, 385, 568, 709, 800, 895, 1179
AlwI GGATC 4 cut(s) 573, 586, 713, 860
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 2 cut(s) 3, 237
ApoI RAATTY 1 cut(s) 92
AsiGI ACCGGT 1 cut(s) 791
AspS9I GGNCC 1 cut(s) 237
AsuC2I CCSGG 3 cut(s) 219, 220, 820
AsuHPI GGTGA 5 cut(s) 46, 205, 318, 830, 938
AvaI CYCGRG 1 cut(s) 218
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 578
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 2 cut(s) 274, 1019
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 3 cut(s) 274, 918, 1086
BccI CCATC 4 cut(s) 338, 409, 476, 1160
BceAI ACGGC 2 cut(s) 224, 319
BclI TGATCA 1 cut(s) 969
BcnI CCSGG 3 cut(s) 219, 220, 820
BcoDI GTCTC 9 cut(s) 35, 113, 356, 385, 568, 709, 800, 895, 1179
BfaI CTAG 3 cut(s) 356, 1004, 1064
BfmI CTRYAG 1 cut(s) 954
BglI GCCNNNNNGGC 2 cut(s) 284, 785
BlpI GCTNAGC 1 cut(s) 363
BmcAI AGTACT 1 cut(s) 1062
Bme1390I CCNGG 3 cut(s) 219, 220, 820
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 2 cut(s) 307, 580
BmrFI CCNGG 3 cut(s) 219, 220, 820
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 3 cut(s) 581, 657, 1142
BmuI ACTGGG 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 1013
Bpu1102I GCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 3 cut(s) 219, 220, 820
BsaAI YACGTR 1 cut(s) 1183
BsaBI GATNNNNATC 1 cut(s) 419
BsaI GGTCTC 3 cut(s) 800, 895, 1179
BsaJI CCNNGG 3 cut(s) 66, 217, 218
BsaWI WCCGGW 2 cut(s) 590, 791
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 524
Bse118I RCCGGY 2 cut(s) 779, 791
Bse1I ACTGG 4 cut(s) 262, 751, 807, 938
Bse3DI GCAATG 2 cut(s) 684, 897
Bse8I GATNNNNATC 1 cut(s) 419
BseDI CCNNGG 3 cut(s) 66, 217, 218
BseGI GGATG 2 cut(s) 514, 1008
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 225, 524
BseMI GCAATG 2 cut(s) 684, 897
BseMII CTCAG 6 cut(s) 86, 354, 359, 398, 1004, 1011
BseNI ACTGG 4 cut(s) 262, 751, 807, 938
BseRI GAGGAG 1 cut(s) 615
BseYI CCCAGC 1 cut(s) 654
Bsh1236I CGCG 2 cut(s) 194, 1076
Bsh1285I CGRYCG 1 cut(s) 792
BshFI GGCC 2 cut(s) 5, 239
BshNI GGYRCC 1 cut(s) 305
BshTI ACCGGT 1 cut(s) 791
BsiEI CGRYCG 1 cut(s) 792
BsiHKAI GWGCWC 3 cut(s) 274, 918, 1086
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 5 cut(s) 219, 591, 780, 792, 819
BslI CCNNNNNNNGG 2 cut(s) 225, 524
BsmAI GTCTC 9 cut(s) 35, 113, 356, 385, 568, 709, 800, 895, 1179
BsmBI CGTCTC 2 cut(s) 113, 385
BsnI GGCC 2 cut(s) 5, 239
Bso31I GGTCTC 3 cut(s) 800, 895, 1179
BsoBI CYCGRG 1 cut(s) 218
Bsp1286I GDGCHC 4 cut(s) 274, 918, 1019, 1086
Bsp143I GATC 4 cut(s) 578, 718, 852, 969
Bsp1720I GCTNAGC 1 cut(s) 363
BspACI CCGC 4 cut(s) 63, 980, 1047, 1076
BspANI GGCC 2 cut(s) 5, 239
BspCNI CTCAG 6 cut(s) 85, 355, 360, 397, 1005, 1012
BspFNI CGCG 2 cut(s) 194, 1076
BspLI GGNNCC 2 cut(s) 307, 580
BspPI GGATC 4 cut(s) 573, 586, 713, 860
BspT107I GGYRCC 1 cut(s) 305
BspTNI GGTCTC 3 cut(s) 800, 895, 1179
BsrDI GCAATG 2 cut(s) 684, 897
BsrFI RCCGGY 2 cut(s) 779, 791
BsrI ACTGG 4 cut(s) 262, 751, 807, 938
BssAI RCCGGY 2 cut(s) 779, 791
BssECI CCNNGG 3 cut(s) 66, 217, 218
BssMI GATC 4 cut(s) 578, 718, 852, 969
BssT1I CCWWGG 1 cut(s) 66
Bst4CI ACNGT 7 cut(s) 107, 310, 472, 492, 647, 842, 955
Bst6I CTCTTC 1 cut(s) 866
BstAPI GCANNNNNTGC 2 cut(s) 686, 722
BstBAI YACGTR 1 cut(s) 1183
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 6 cut(s) 72, 363, 368, 384, 1013, 1020
BstF5I GGATG 2 cut(s) 514, 1008
BstFNI CGCG 2 cut(s) 194, 1076
BstKTI GATC 4 cut(s) 581, 721, 855, 972
BstMAI GTCTC 9 cut(s) 35, 113, 356, 385, 568, 709, 800, 895, 1179
BstMBI GATC 4 cut(s) 578, 718, 852, 969
BstMCI CGRYCG 1 cut(s) 792
BstMWI GCNNNNNNNGC 6 cut(s) 284, 602, 686, 722, 785, 1046
BstSCI CCNGG 3 cut(s) 217, 218, 818
BstSFI CTRYAG 1 cut(s) 954
BstUI CGCG 2 cut(s) 194, 1076
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 2 cut(s) 578, 718
BstYI RGATCY 2 cut(s) 578, 718
BsuRI GGCC 2 cut(s) 5, 239
BtsCI GGATG 2 cut(s) 514, 1008
BtsI GCAGTG 1 cut(s) 1034
BtsIMutI CAGTG 5 cut(s) 468, 488, 951, 972, 1034
Cac8I GCNNGC 1 cut(s) 691
CaiI CAGNNNCTG 1 cut(s) 722
Cfr10I RCCGGY 2 cut(s) 779, 791
Cfr13I GGNCC 1 cut(s) 237
Cfr9I CCCGGG 1 cut(s) 218
Csp6I GTAC 2 cut(s) 922, 1061
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 4 cut(s) 234, 262, 632, 740
CviQI GTAC 2 cut(s) 922, 1061
DdeI CTNAG 6 cut(s) 72, 363, 368, 384, 1013, 1020
DpnI GATC 4 cut(s) 580, 720, 854, 971
DpnII GATC 4 cut(s) 578, 718, 852, 969
DraI TTTAAA 1 cut(s) 997
DraIII CACNNNGTG 1 cut(s) 474
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 866
EarI CTCTTC 1 cut(s) 866
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 2 cut(s) 274, 1019
Eco31I GGTCTC 3 cut(s) 800, 895, 1179
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 66
EcoT38I GRGCYC 2 cut(s) 274, 1019
ErhI CCWWGG 1 cut(s) 66
Esp3I CGTCTC 2 cut(s) 113, 385
FaeI CATG 4 cut(s) 237, 265, 635, 743
FatI CATG 4 cut(s) 233, 261, 631, 739
FbaI TGATCA 1 cut(s) 969
FblI GTMKAC 1 cut(s) 930
FokI GGATG 2 cut(s) 501, 995
FriOI GRGCYC 2 cut(s) 274, 1019
FspBI CTAG 3 cut(s) 356, 1004, 1064
GsaI CCCAGC 1 cut(s) 658
HaeIII GGCC 2 cut(s) 5, 239
HapII CCGG 5 cut(s) 219, 591, 780, 792, 819
Hin1II CATG 4 cut(s) 237, 265, 635, 743
HincII GTYRAC 1 cut(s) 1151
HindII GTYRAC 1 cut(s) 1151
HpaII CCGG 5 cut(s) 219, 591, 780, 792, 819
HphI GGTGA 5 cut(s) 46, 205, 318, 830, 938
Hpy166II GTNNAC 5 cut(s) 831, 931, 988, 1095, 1151
Hpy188I TCNGA 4 cut(s) 75, 269, 301, 435
Hpy188III TCNNGA 3 cut(s) 140, 576, 1012
Hpy8I GTNNAC 5 cut(s) 831, 931, 988, 1095, 1151
HpyAV CCTTC 3 cut(s) 157, 746, 1082
HpyCH4III ACNGT 7 cut(s) 107, 310, 472, 492, 647, 842, 955
HpyCH4IV ACGT 4 cut(s) 323, 378, 990, 1182
HpyCH4V TGCA 3 cut(s) 123, 572, 890
HpyF10VI GCNNNNNNNGC 6 cut(s) 284, 602, 686, 722, 785, 1046
HpyF3I CTNAG 6 cut(s) 72, 363, 368, 384, 1013, 1020
HpySE526I ACGT 4 cut(s) 323, 378, 990, 1182
Hsp92II CATG 4 cut(s) 237, 265, 635, 743
Ksp22I TGATCA 1 cut(s) 969
Kzo9I GATC 4 cut(s) 578, 718, 852, 969
LmnI GCTCC 4 cut(s) 269, 593, 602, 677
LweI GCATC 3 cut(s) 581, 657, 1142
MaeI CTAG 3 cut(s) 356, 1004, 1064
MaeII ACGT 4 cut(s) 323, 378, 990, 1182
MaeIII GTNAC 2 cut(s) 324, 486
MalI GATC 4 cut(s) 580, 720, 854, 971
MboI GATC 4 cut(s) 578, 718, 852, 969
MboII GAAGA 6 cut(s) 11, 162, 165, 431, 747, 853
MflI RGATCY 2 cut(s) 578, 718
MhlI GDGCHC 4 cut(s) 274, 918, 1019, 1086
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 92, 429, 876
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 125, 358, 936
MmeI TCCRAC 3 cut(s) 108, 247, 542
MnlI CCTC 9 cut(s) 22, 161, 516, 522, 593, 595, 878, 1112, 1123
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 465, 555, 996
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 5 cut(s) 219, 591, 780, 792, 819
MspR9I CCNGG 3 cut(s) 219, 220, 820
MvnI CGCG 2 cut(s) 194, 1076
MwoI GCNNNNNNNGC 6 cut(s) 284, 602, 686, 722, 785, 1046
NciI CCSGG 3 cut(s) 219, 220, 820
NdeII GATC 4 cut(s) 578, 718, 852, 969
NlaIII CATG 4 cut(s) 237, 265, 635, 743
NlaIV GGNNCC 2 cut(s) 307, 580
NmuCI GTSAC 2 cut(s) 324, 486
PfeI GAWTC 7 cut(s) 143, 167, 244, 436, 459, 812, 823
PflMI CCANNNNNTGG 1 cut(s) 524
PinAI ACCGGT 1 cut(s) 791
PleI GAGTC 3 cut(s) 124, 357, 935
PpsI GAGTC 3 cut(s) 124, 357, 935
Ppu21I YACGTR 1 cut(s) 1183
Psp124BI GAGCTC 1 cut(s) 274
Psp1406I AACGTT 1 cut(s) 990
PspFI CCCAGC 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 307, 580
PspPI GGNCC 1 cut(s) 237
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 2 cut(s) 578, 718
RsaI GTAC 2 cut(s) 923, 1062
RsaNI GTAC 2 cut(s) 922, 1061
SacI GAGCTC 1 cut(s) 274
SaqAI TTAA 3 cut(s) 465, 555, 996
Sau3AI GATC 4 cut(s) 578, 718, 852, 969
Sau96I GGNCC 1 cut(s) 237
ScaI AGTACT 1 cut(s) 1062
SchI GAGTC 3 cut(s) 125, 358, 936
ScrFI CCNGG 3 cut(s) 219, 220, 820
SduI GDGCHC 4 cut(s) 274, 918, 1019, 1086
SfaNI GCATC 3 cut(s) 581, 657, 1142
SfcI CTRYAG 1 cut(s) 954
SmaI CCCGGG 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 92, 429, 876
SsiI CCGC 4 cut(s) 63, 980, 1047, 1076
SspI AATATT 1 cut(s) 639
SspMI CTAG 3 cut(s) 356, 1004, 1064
SstI GAGCTC 1 cut(s) 274
StyD4I CCNGG 3 cut(s) 217, 218, 818
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 7 cut(s) 107, 310, 472, 492, 647, 842, 955
TaiI ACGT 4 cut(s) 326, 381, 993, 1185
TaqI TCGA 1 cut(s) 1086
TaqII GACCGA 1 cut(s) 1161
TasI AATT 3 cut(s) 92, 429, 876
TatI WGTACW 2 cut(s) 921, 1060
TfiI GAWTC 7 cut(s) 143, 167, 244, 436, 459, 812, 823
Tru1I TTAA 3 cut(s) 465, 555, 996
Tru9I TTAA 3 cut(s) 465, 555, 996
TscAI CASTG 5 cut(s) 475, 495, 958, 972, 1034
TseFI GTSAC 2 cut(s) 324, 486
Tsp45I GTSAC 2 cut(s) 324, 486
TspDTI ATGAA 3 cut(s) 31, 37, 728
TspMI CCCGGG 1 cut(s) 218
TspRI CASTG 5 cut(s) 475, 495, 958, 972, 1034
Van91I CCANNNNNTGG 1 cut(s) 524
XapI RAATTY 1 cut(s) 92
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmaI CCCGGG 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 930
XspI CTAG 3 cut(s) 356, 1004, 1064
ZrmI AGTACT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.