Prupe.4G008600_v2.0.a1

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012068
Physical Location & Seq
Forward (+)
440511 .. 443573
3063 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G008600.1

Sequence Viewer

Length: 1188 bp
ATGGCCGGCATGTTGAGACTTGCCATGGCCTTCTCTGTTTTGCTCTCTCTGTCTCTGCCATCATCCCATGCCCAAACCAGTACTTGTGGAGACTACAAATTTACAAACAAGAGCTTCACCTACTGCAGCGACCTTCCCTACCTCAACTCTTTCCTCCATTGGACCTTTGAACAATCAACCGGGAAGCTTCAAATGGCGTACAGACACACAGGGATCACAGCCTCAAGTTGGGTCGCGTGGGCCATCAACCCAAACCTGAACAGTGTATCGTCAGCCATGCTTGGTGCTCAATCTCTGGTTGCTTTTCAGCAATCCAATGGAACCATGAGGTTCTACAAGTCGCCTATCGGTACCAGCAACTACCAGGCCAGTTTGGCGGAGGGAAGTCTGACCTACGAGGTTTCTGATTTGTCAGCCGAGTATTTGAACAATGATGAGATGATCATCTTTGCTACTTGGGTTCTTCCCACCAATTCAACCACCATACTTCAGGTTTGGCAGGAGGGTCCGGTTTCCAATGGCTTGCCCTCAGTTCATCCCACCGTTGCACCCAACACTAATGCCAAGGGGACTTTGAATTTGCTTTCTGGGCAGACAGCATCGAGCGGTGGAGGGGGCTCTAAATTTAGAAAGAGAAACATCCATGGAATTCTAAATGCAGTGAGTTGGGGTGTGTTGATGCCTTTTGGAGCAATGGTAGCAAGGTACTTGAAGGTCTTCAAATCCGCAGACCCTGCATGGTTTTACCTTCACGCCACTTGCCAAACCTCAGCCTACGTTGTTGGTGTTGCTGGCTGGGCCACAGGTCTTAAACTTGGTAGCGATTCTCCAGGCATCCAGTACGACACACACAGAAACATTGGGATCATCCTCTTTTGCCTTGGAACACTTCAGGTGTTTGCTTTGCTTCTGAGACCCAACAAGGACCACAAATTCAGATTCCACTGGAACATCTACCACCACGCAACTGGGTACGCTGTTATCATCCTCAGCATCGTCAACATATTCGAAGGATTTGACATCTTGAAACCCGAGAAGAAGTGGAAGAATGCATACATCGGCTTGATCATTGCCTTGGGTGTCCAAGCTGCATTGTTGGAAGCTTATACATGGTATGTTGTACTGAAGAGGAAGAGGTCAGAAAAGGCACCGCGCACGGCCAATGGTGTCAACGGCTACAGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

396

Amino Acids

43.34

Weight (kDa)

9.44

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17280 AT5G47530
fragaria_vesca FvH4_3g00780 FvH4_3g00780
malus_domestica MD05G1359500.v1.1 MD10G1335000.v1.1
prunus_persica Prupe.4G008600_v2.0.a1
pyrus_communis pycom10g28480
rosa_chinensis RchiOBHm_Chr5g0001021
rosa_laevigata RLG00000030914
rosa_multiflora Rmu_sc0000255.1_g000030 Rmu_sc0004189.1_g000001
rosa_roxburghii Rroxscaffold_1G00075260
rosa_rugosa Rorug04G0389000
rosa_samantha Rh5AG008200 Rh5BG010300 Rh5CG008900 Rh5DG009000
rosa_wichuraiana Rw5G000840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 350, 1147
AccBSI CCGCTC 1 cut(s) 606
AccII CGCG 2 cut(s) 236, 1153
AciI CCGC 4 cut(s) 377, 606, 726, 1151
AclWI GGATC 2 cut(s) 221, 872
AcoI YGGCCR 2 cut(s) 3, 1158
AcsI RAATTY 5 cut(s) 98, 577, 623, 648, 932
AcuI CTGAAG 3 cut(s) 473, 875, 1145
AfaI GTAC 7 cut(s) 82, 200, 352, 707, 842, 974, 1122
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 8 cut(s) 170, 191, 427, 477, 577, 712, 721, 1027
AjnI CCWGG 2 cut(s) 363, 829
AluBI AGCT 4 cut(s) 114, 187, 1088, 1103
AluI AGCT 4 cut(s) 114, 187, 1088, 1103
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 4 cut(s) 10, 57, 84, 907
AlwI GGATC 2 cut(s) 221, 872
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 1031
AoxI GGCC 6 cut(s) 3, 27, 240, 366, 798, 1158
ApeKI GCWGC 2 cut(s) 126, 1088
ApoI RAATTY 5 cut(s) 98, 577, 623, 648, 932
ArsI GACNNNNNNTTYG 2 cut(s) 562, 594
Asp700I GAANNNNTTC 1 cut(s) 716
Asp718I GGTACC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 1155
AspS9I GGNCC 5 cut(s) 162, 240, 506, 798, 925
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 1008
AvaI CYCGRG 1 cut(s) 1031
AvaII GGWCC 3 cut(s) 162, 506, 925
BanI GGYRCC 2 cut(s) 350, 1147
BanII GRGCYC 1 cut(s) 620
BarI GAAGNNNNNNTAC 2 cut(s) 1037, 1069
BbsI GAAGAC 1 cut(s) 709
Bbv12I GWGCWC 1 cut(s) 289
BbvCI CCTCAGC 2 cut(s) 769, 989
BbvI GCAGC 2 cut(s) 138, 1075
BccI CCATC 2 cut(s) 67, 251
BceAI ACGGC 1 cut(s) 1173
BciT130I CCWGG 2 cut(s) 365, 831
BclI TGATCA 2 cut(s) 441, 1065
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 4 cut(s) 10, 57, 84, 907
BfmI CTRYAG 2 cut(s) 124, 1177
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 2 cut(s) 127, 1089
BlsI GCNGC 2 cut(s) 128, 1090
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 181, 365, 831
Bme18I GGWCC 3 cut(s) 162, 506, 925
BmeT110I CYCGRG 1 cut(s) 1031
BmgT120I GGNCC 5 cut(s) 162, 240, 506, 798, 925
BmiI GGNNCC 4 cut(s) 322, 352, 507, 1149
BmrFI CCNGG 3 cut(s) 181, 365, 831
BmrI ACTGGG 1 cut(s) 978
BmsI GCATC 4 cut(s) 608, 669, 843, 1002
BmuI ACTGGG 1 cut(s) 978
BpiI GAAGAC 1 cut(s) 709
BpmI CTGGAG 1 cut(s) 813
Bpu10I CCTNAGC 2 cut(s) 769, 989
Bpu14I TTCGAA 1 cut(s) 1008
BpuEI CTTGAG 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 443
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 5 cut(s) 24, 564, 643, 880, 1074
BsaWI WCCGGW 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 681, 711
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 5 cut(s) 78, 369, 838, 950, 973
Bse3DI GCAATG 2 cut(s) 699, 1068
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 2 cut(s) 365, 831
BseDI CCNNGG 5 cut(s) 24, 564, 643, 880, 1074
BseGI GGATG 6 cut(s) 62, 535, 639, 834, 867, 984
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 2 cut(s) 699, 1068
BseMII CTCAG 4 cut(s) 543, 783, 902, 1003
BseNI ACTGG 5 cut(s) 78, 369, 838, 950, 973
BseXI GCAGC 2 cut(s) 138, 1075
BseYI CCCAGC 1 cut(s) 795
Bsh1236I CGCG 2 cut(s) 236, 1153
BshFI GGCC 6 cut(s) 5, 29, 242, 368, 800, 1160
BshNI GGYRCC 2 cut(s) 350, 1147
BsiHKAI GWGCWC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 1031
BsiSI CCGG 3 cut(s) 6, 180, 509
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 4 cut(s) 10, 57, 84, 907
BsmFI GGGAC 1 cut(s) 583
BsmI GAATGC 1 cut(s) 1054
BsnI GGCC 6 cut(s) 5, 29, 242, 368, 800, 1160
Bso31I GGTCTC 1 cut(s) 907
BsoBI CYCGRG 1 cut(s) 1031
Bsp119I TTCGAA 1 cut(s) 1008
Bsp1286I GDGCHC 2 cut(s) 289, 620
Bsp143I GATC 4 cut(s) 213, 441, 864, 1065
Bsp19I CCATGG 2 cut(s) 24, 643
BspACI CCGC 4 cut(s) 377, 606, 726, 1151
BspANI GGCC 6 cut(s) 5, 29, 242, 368, 800, 1160
BspCNI CTCAG 4 cut(s) 542, 782, 903, 1002
BspFNI CGCG 2 cut(s) 236, 1153
BspLI GGNNCC 4 cut(s) 322, 352, 507, 1149
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 2 cut(s) 221, 872
BspT104I TTCGAA 1 cut(s) 1008
BspT107I GGYRCC 2 cut(s) 350, 1147
BspTNI GGTCTC 1 cut(s) 907
BsrBI CCGCTC 1 cut(s) 606
BsrDI GCAATG 2 cut(s) 699, 1068
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 5 cut(s) 78, 369, 838, 950, 973
BssAI RCCGGY 1 cut(s) 5
BssECI CCNNGG 5 cut(s) 24, 564, 643, 880, 1074
BssMI GATC 4 cut(s) 213, 441, 864, 1065
BssT1I CCWWGG 5 cut(s) 24, 564, 643, 880, 1074
Bst2UI CCWGG 2 cut(s) 365, 831
Bst4CI ACNGT 3 cut(s) 263, 544, 1181
Bst6I CTCTTC 2 cut(s) 1121, 1127
BstAPI GCANNNNNTGC 1 cut(s) 734
BstBI TTCGAA 1 cut(s) 1008
BstC8I GCNNGC 3 cut(s) 7, 524, 793
BstDEI CTNAG 5 cut(s) 529, 769, 911, 989, 1185
BstDSI CCRYGG 2 cut(s) 24, 643
BstF5I GGATG 6 cut(s) 62, 535, 639, 834, 867, 984
BstFNI CGCG 2 cut(s) 236, 1153
BstHHI GCGC 1 cut(s) 1155
BstKTI GATC 4 cut(s) 216, 444, 867, 1068
BstMAI GTCTC 4 cut(s) 10, 57, 84, 907
BstMBI GATC 4 cut(s) 213, 441, 864, 1065
BstMWI GCNNNNNNNGC 5 cut(s) 374, 589, 698, 734, 797
BstNI CCWGG 2 cut(s) 365, 831
BstNSI RCATGY 1 cut(s) 13
BstSCI CCNGG 3 cut(s) 179, 363, 829
BstSFI CTRYAG 2 cut(s) 124, 1177
BstUI CGCG 2 cut(s) 236, 1153
BstV1I GCAGC 2 cut(s) 138, 1075
BstV2I GAAGAC 1 cut(s) 709
BstXI CCANNNNNNTGG 1 cut(s) 968
BsuRI GGCC 6 cut(s) 5, 29, 242, 368, 800, 1160
BtgI CCRYGG 2 cut(s) 24, 643
BtsCI GGATG 6 cut(s) 62, 535, 639, 834, 867, 984
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 4 cut(s) 268, 666, 943, 1186
Cac8I GCNNGC 3 cut(s) 7, 524, 793
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 1 cut(s) 1155
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 5 cut(s) 162, 240, 506, 798, 925
Csp6I GTAC 7 cut(s) 81, 199, 351, 706, 841, 973, 1121
CviAII CATG 8 cut(s) 10, 25, 68, 277, 325, 644, 738, 1110
CviQI GTAC 7 cut(s) 81, 199, 351, 706, 841, 973, 1121
DdeI CTNAG 5 cut(s) 529, 769, 911, 989, 1185
DpnI GATC 4 cut(s) 215, 443, 866, 1067
DpnII GATC 4 cut(s) 213, 441, 864, 1065
EaeI YGGCCR 2 cut(s) 3, 1158
Eam1104I CTCTTC 2 cut(s) 1121, 1127
EarI CTCTTC 2 cut(s) 1121, 1127
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 5 cut(s) 24, 564, 643, 880, 1074
Eco24I GRGCYC 1 cut(s) 620
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 3 cut(s) 162, 506, 925
Eco57I CTGAAG 3 cut(s) 473, 875, 1145
Eco88I CYCGRG 1 cut(s) 1031
EcoRI GAATTC 1 cut(s) 648
EcoRII CCWGG 2 cut(s) 363, 829
EcoT14I CCWWGG 5 cut(s) 24, 564, 643, 880, 1074
EcoT22I ATGCAT 1 cut(s) 1054
EcoT38I GRGCYC 1 cut(s) 620
ErhI CCWWGG 5 cut(s) 24, 564, 643, 880, 1074
FaeI CATG 8 cut(s) 13, 28, 71, 280, 328, 647, 741, 1113
FaqI GGGAC 1 cut(s) 583
FatI CATG 8 cut(s) 9, 24, 67, 276, 324, 643, 737, 1109
FbaI TGATCA 2 cut(s) 441, 1065
Fnu4HI GCNGC 2 cut(s) 127, 1089
FokI GGATG 6 cut(s) 49, 522, 626, 821, 854, 971
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 127, 1089
GlaI GCGC 1 cut(s) 1154
GluI GCNGC 2 cut(s) 127, 1089
GsaI CCCAGC 1 cut(s) 799
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 6 cut(s) 5, 29, 242, 368, 800, 1160
HapII CCGG 3 cut(s) 6, 180, 509
HhaI GCGC 1 cut(s) 1155
Hin1II CATG 8 cut(s) 13, 28, 71, 280, 328, 647, 741, 1113
Hin6I GCGC 1 cut(s) 1153
HinP1I GCGC 1 cut(s) 1153
HincII GTYRAC 2 cut(s) 1000, 1171
HindII GTYRAC 2 cut(s) 1000, 1171
HindIII AAGCTT 2 cut(s) 185, 1101
HinfI GANTC 2 cut(s) 824, 939
HpaII CCGG 3 cut(s) 6, 180, 509
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 1000, 1171
Hpy188I TCNGA 5 cut(s) 390, 406, 912, 938, 1141
Hpy188III TCNNGA 1 cut(s) 1024
Hpy8I GTNNAC 2 cut(s) 1000, 1171
HpyAV CCTTC 5 cut(s) 40, 143, 706, 758, 1004
HpyCH4III ACNGT 3 cut(s) 263, 544, 1181
HpyCH4IV ACGT 1 cut(s) 777
HpyCH4V TGCA 6 cut(s) 126, 548, 659, 737, 1052, 1091
HpyF10VI GCNNNNNNNGC 5 cut(s) 374, 589, 698, 734, 797
HpyF3I CTNAG 5 cut(s) 529, 769, 911, 989, 1185
HpySE526I ACGT 1 cut(s) 777
Hsp92II CATG 8 cut(s) 13, 28, 71, 280, 328, 647, 741, 1113
HspAI GCGC 1 cut(s) 1153
KpnI GGTACC 1 cut(s) 354
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Ksp22I TGATCA 2 cut(s) 441, 1065
Kzo9I GATC 4 cut(s) 213, 441, 864, 1065
LmnI GCTCC 1 cut(s) 689
Lsp1109I GCAGC 2 cut(s) 138, 1075
LweI GCATC 4 cut(s) 608, 669, 843, 1002
MaeII ACGT 1 cut(s) 777
MalI GATC 4 cut(s) 215, 443, 866, 1067
MbiI CCGCTC 1 cut(s) 606
MboI GATC 4 cut(s) 213, 441, 864, 1065
MboII GAAGA 6 cut(s) 455, 709, 1048, 1057, 1138, 1144
MhlI GDGCHC 2 cut(s) 289, 620
MluCI AATT 6 cut(s) 98, 472, 577, 623, 648, 932
MmeI TCCRAC 1 cut(s) 1077
Mph1103I ATGCAT 1 cut(s) 1054
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 716
MseI TTAA 1 cut(s) 810
MspI CCGG 3 cut(s) 6, 180, 509
MspR9I CCNGG 3 cut(s) 181, 365, 831
Mva1269I GAATGC 1 cut(s) 1054
MvaI CCWGG 2 cut(s) 365, 831
MvnI CGCG 2 cut(s) 236, 1153
MwoI GCNNNNNNNGC 5 cut(s) 374, 589, 698, 734, 797
NaeI GCCGGC 1 cut(s) 7
NciI CCSGG 1 cut(s) 181
NcoI CCATGG 2 cut(s) 24, 643
NdeII GATC 4 cut(s) 213, 441, 864, 1065
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 8 cut(s) 13, 28, 71, 280, 328, 647, 741, 1113
NlaIV GGNNCC 4 cut(s) 322, 352, 507, 1149
NmeAIII GCCGAG 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 1054
NspI RCATGY 1 cut(s) 13
NspV TTCGAA 1 cut(s) 1008
PctI GAATGC 1 cut(s) 1054
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 716
PfeI GAWTC 2 cut(s) 824, 939
PkrI GCNGC 2 cut(s) 128, 1090
Psp6I CCWGG 2 cut(s) 363, 829
PspFI CCCAGC 1 cut(s) 795
PspGI CCWGG 2 cut(s) 363, 829
PspN4I GGNNCC 4 cut(s) 322, 352, 507, 1149
PspPI GGNCC 5 cut(s) 162, 240, 506, 798, 925
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 734
RsaI GTAC 7 cut(s) 82, 200, 352, 707, 842, 974, 1122
RsaNI GTAC 7 cut(s) 81, 199, 351, 706, 841, 973, 1121
SaqAI TTAA 1 cut(s) 810
SatI GCNGC 2 cut(s) 127, 1089
Sau3AI GATC 4 cut(s) 213, 441, 864, 1065
Sau96I GGNCC 5 cut(s) 162, 240, 506, 798, 925
ScaI AGTACT 1 cut(s) 82
ScrFI CCNGG 3 cut(s) 181, 365, 831
SduI GDGCHC 2 cut(s) 289, 620
SfaNI GCATC 4 cut(s) 608, 669, 843, 1002
SfcI CTRYAG 2 cut(s) 124, 1177
SfuI TTCGAA 1 cut(s) 1008
SinI GGWCC 3 cut(s) 162, 506, 925
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse9I AATT 6 cut(s) 98, 472, 577, 623, 648, 932
SsiI CCGC 4 cut(s) 377, 606, 726, 1151
StyD4I CCNGG 3 cut(s) 179, 363, 829
StyI CCWWGG 5 cut(s) 24, 564, 643, 880, 1074
TaaI ACNGT 3 cut(s) 263, 544, 1181
TaiI ACGT 1 cut(s) 780
TaqI TCGA 2 cut(s) 602, 1008
TasI AATT 6 cut(s) 98, 472, 577, 623, 648, 932
TatI WGTACW 2 cut(s) 80, 1120
TfiI GAWTC 2 cut(s) 824, 939
Tru1I TTAA 1 cut(s) 810
Tru9I TTAA 1 cut(s) 810
TscAI CASTG 4 cut(s) 268, 666, 950, 1186
TseI GCWGC 2 cut(s) 126, 1088
TspDTI ATGAA 1 cut(s) 524
TspRI CASTG 4 cut(s) 268, 666, 950, 1186
VpaK11BI GGWCC 3 cut(s) 162, 506, 925
XapI RAATTY 5 cut(s) 98, 577, 623, 648, 932
XceI RCATGY 1 cut(s) 13
XcmI CCANNNNNNNNNTGG 1 cut(s) 965
XmnI GAANNNNTTC 1 cut(s) 716
ZrmI AGTACT 1 cut(s) 82
Zsp2I ATGCAT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.