AT4G17310

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000869
Physical Location & Seq
Reverse (-)
9685170 .. 9687002
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17310.12

Sequence Viewer

Length: 300 bp
ATGGCTTCTGCTTGTCGTAAGCTTTTTAACAGAGCTTCCGTCTCTTCCCTCAAATCTACCCTCAGATCAACCACCGGATCTACGTCGGCTGCGTCATCAGCCGGATTTCGTCTTCCTTCTCAACCCACTCGCCATTTCTCCTTCTCCAGATGTCCTTCGGAGCTGGGATGTGTTCAGTCGCTGTTACCGCTGCACAGCACGGTGGCGGCGGCGAGGCTGACGTCATGTCTAAGCACAACTTCAAGGAGTAGCCGAGCTCTCTCTCAGGGTACACTCTGCTGCACCTCTCCCGATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.34

Weight (kDa)

10.71

Isoelectric Point (pI)

68.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 224
AciI CCGC 3 cut(s) 188, 206, 209
AclWI GGATC 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 1 cut(s) 243
AhdI GACNNNNNGTC 1 cut(s) 225
AluBI AGCT 4 cut(s) 22, 35, 163, 257
AluI AGCT 4 cut(s) 22, 35, 163, 257
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 89, 190, 279
BanII GRGCYC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 3 cut(s) 76, 177, 266
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 5 cut(s) 90, 191, 207, 210, 280
BlsI GCNGC 5 cut(s) 91, 192, 208, 211, 281
BmeRI GACNNNNNGTC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 74
BseGI GGATG 1 cut(s) 173
BseMII CTCAG 2 cut(s) 76, 278
BseXI GCAGC 3 cut(s) 76, 177, 266
BseYI CCCAGC 1 cut(s) 163
BsgI GTGCAG 2 cut(s) 176, 265
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 2 cut(s) 75, 102
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 3 cut(s) 65, 77, 292
BspACI CCGC 3 cut(s) 188, 206, 209
BspCNI CTCAG 2 cut(s) 75, 277
BspPI GGATC 1 cut(s) 85
BssMI GATC 3 cut(s) 65, 77, 292
BssNI GRCGYC 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 221
BstDEI CTNAG 3 cut(s) 62, 230, 264
BstF5I GGATG 1 cut(s) 173
BstKTI GATC 3 cut(s) 68, 80, 295
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 65, 77, 292
BstMWI GCNNNNNNNGC 2 cut(s) 98, 187
BstV1I GCAGC 3 cut(s) 76, 177, 266
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BtsCI GGATG 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 181
CseI GACGC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 270
CviAII CATG 1 cut(s) 225
CviJI RGCY 9 cut(s) 5, 22, 35, 89, 101, 163, 217, 252, 257
CviKI_1 RGCY 9 cut(s) 5, 22, 35, 89, 101, 163, 217, 252, 257
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 3 cut(s) 62, 230, 264
DpnI GATC 3 cut(s) 67, 79, 294
DpnII GATC 3 cut(s) 65, 77, 292
DriI GACNNNNNGTC 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 49
Eam1105I GACNNNNNGTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 257
EcoICRI GAGCTC 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 228
FaiI YATR 1 cut(s) 226
FalI AAGNNNNNCTT 2 cut(s) 223, 255
FatI CATG 1 cut(s) 224
Fnu4HI GCNGC 5 cut(s) 90, 191, 207, 210, 280
FokI GGATG 1 cut(s) 180
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 5 cut(s) 90, 191, 207, 210, 280
GluI GCNGC 5 cut(s) 90, 191, 207, 210, 280
GsaI CCCAGC 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 130
HapII CCGG 2 cut(s) 75, 102
HgaI GACGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 1 cut(s) 228
HindIII AAGCTT 1 cut(s) 20
HpaII CCGG 2 cut(s) 75, 102
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 65, 160
Hpy188III TCNNGA 2 cut(s) 147, 290
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 126, 151, 165
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 2 cut(s) 83, 221
HpyCH4V TGCA 2 cut(s) 193, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 187
HpyF3I CTNAG 3 cut(s) 62, 230, 264
HpySE526I ACGT 2 cut(s) 83, 221
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 1 cut(s) 228
Kzo9I GATC 3 cut(s) 65, 77, 292
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 88, 115, 149, 160, 251
Lsp1109I GCAGC 3 cut(s) 76, 177, 266
MaeII ACGT 2 cut(s) 83, 221
MaeIII GTNAC 1 cut(s) 183
MalI GATC 3 cut(s) 67, 79, 294
MboI GATC 3 cut(s) 65, 77, 292
MboII GAAGA 2 cut(s) 36, 104
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 259
MnlI CCTC 4 cut(s) 59, 71, 207, 295
MseI TTAA 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 190
MspI CCGG 2 cut(s) 75, 102
MwoI GCNNNNNNNGC 2 cut(s) 98, 187
NdeII GATC 3 cut(s) 65, 77, 292
NlaIII CATG 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PkrI GCNGC 5 cut(s) 91, 192, 208, 211, 281
Psp124BI GAGCTC 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SacI GAGCTC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 5 cut(s) 90, 191, 207, 210, 280
Sau3AI GATC 3 cut(s) 65, 77, 292
SduI GDGCHC 1 cut(s) 259
SetI ASST 7 cut(s) 24, 37, 86, 165, 224, 259, 287
SsiI CCGC 3 cut(s) 188, 206, 209
SstI GAGCTC 1 cut(s) 259
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 2 cut(s) 86, 224
TauI GCSGC 2 cut(s) 209, 212
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseI GCWGC 3 cut(s) 89, 190, 279
TspGWI ACGGA 1 cut(s) 28
ZraI GACGTC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.