Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000869

Physical Location & Seq

Genomic Coordinates Forward (+)

8328944 .. 8331113

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1063100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCTTCAGCCTGCAGGCAATTCGCCAACAGAGCTTCCCTATCGTCCATCCGATCCGCCGTCAGATCCAGCGTCCCAAAATCTTCCGCTTCACGCTTCCCTCTCCCCACCGCCTCCTCTCCCTCCTCCGCCCCTCTTCGACGTTTCTCGCTCTCTAGGCCTCCAGGTGCGTTGGGATGCGTTCAGTCACTACTTCCACTCCACAGCGCGGTGGCGGCGGCGAGGTTGACGTCGTCGCTGAGCACTACATCGAGGAGCTGCCGAGCGCTCTCACAGGGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

9.67

Weight (kDa)

12.0

Isoelectric Point (pI)

86.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455
fragaria_vesca	FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060
malus_domestica	MD04G1063100.v1.1
prunus_persica	Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1
pyrus_communis	pycom04g05680
rosa_chinensis	RchiOBHm_Chr7g0203511
rosa_laevigata	RLG00000003524
rosa_roxburghii	Rroxscaffold_3G00253760
rosa_samantha	Rh7BG205600 Rh7CG218600
rosa_wichuraiana	Rw7G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	233
AccII	CGCG	1 cut(s)	209
AciI	CCGC	7 cut(s)	57, 87, 111, 129, 209, 215, 218
AclWI	GGATC	2 cut(s)	48, 60
AcyI	GRCGYC	1 cut(s)	230
AfeI	AGCGCT	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	2 cut(s)	35, 258
AluI	AGCT	2 cut(s)	35, 258
Alw21I	GWGCWC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	48, 60
Aor51HI	AGCGCT	1 cut(s)	267
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	209, 268
BaeGI	GKGCMC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	44
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	165
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	13
BfoI	RGCGCY	1 cut(s)	269
BisI	GCNGC	3 cut(s)	216, 219, 259
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	3 cut(s)	217, 220, 260
Bme1390I	CCNGG	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	48, 182
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	230
BseRI	GAGGAG	3 cut(s)	106, 115, 268
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	245, 281
Bsp143I	GATC	2 cut(s)	53, 65
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	7 cut(s)	57, 87, 111, 129, 209, 215, 218
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	209
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	2 cut(s)	48, 60
BssMI	GATC	2 cut(s)	53, 65
BssNI	GRCGYC	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	13, 17
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	48, 182
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	209, 268
BstKTI	GATC	2 cut(s)	56, 68
BstMBI	GATC	2 cut(s)	53, 65
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 157, 215
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	245
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	48, 182
Cac8I	GCNNGC	2 cut(s)	13, 17
CfoI	GCGC	2 cut(s)	209, 268
CseI	GACGC	1 cut(s)	61
CviJI	RGCY	5 cut(s)	5, 11, 35, 160, 258
CviKI_1	RGCY	5 cut(s)	5, 11, 35, 160, 258
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	55, 67
DpnII	GATC	2 cut(s)	53, 65
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
EciI	GGCGGA	2 cut(s)	46, 118
Eco147I	AGGCCT	1 cut(s)	160
Eco47III	AGCGCT	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	163
FaiI	YATR	1 cut(s)	283
FaqI	GGGAC	1 cut(s)	59
Fnu4HI	GCNGC	3 cut(s)	216, 219, 259
FokI	GGATG	2 cut(s)	35, 189
Fsp4HI	GCNGC	3 cut(s)	216, 219, 259
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	2 cut(s)	208, 267
GluI	GCNGC	3 cut(s)	216, 219, 259
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	160
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	2 cut(s)	209, 268
Hin1I	GRCGYC	1 cut(s)	230
Hin6I	GCGC	2 cut(s)	207, 266
HinP1I	GCGC	2 cut(s)	207, 266
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	2 cut(s)	53, 65
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	3 cut(s)	144, 235, 238
HpyCH4IV	ACGT	2 cut(s)	142, 230
HpyCH4V	TGCA	1 cut(s)	15
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 157, 215
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	2 cut(s)	142, 230
Hsp92I	GRCGYC	1 cut(s)	230
HspAI	GCGC	2 cut(s)	207, 266
Kzo9I	GATC	2 cut(s)	53, 65
LmnI	GCTCC	1 cut(s)	255
LpnPI	CCDG	5 cut(s)	25, 82, 150, 177, 260
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	2 cut(s)	142, 230
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	2 cut(s)	55, 67
MboI	GATC	2 cut(s)	53, 65
MboII	GAAGA	2 cut(s)	75, 128
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	2 cut(s)	245, 281
MluCI	AATT	1 cut(s)	20
MnlI	CCTC	9 cut(s)	111, 124, 127, 133, 136, 144, 171, 216, 246
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	32, 157, 215
NdeII	GATC	2 cut(s)	53, 65
NmuCI	GTSAC	1 cut(s)	186
PceI	AGGCCT	1 cut(s)	160
PflFI	GACNNNGTC	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	217, 220, 260
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	65
PsyI	GACNNNGTC	1 cut(s)	232
SatI	GCNGC	3 cut(s)	216, 219, 259
Sau3AI	GATC	2 cut(s)	53, 65
SbfI	CCTGCAGG	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	165
SdaI	CCTGCAGG	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	245, 281
SetI	ASST	6 cut(s)	37, 145, 169, 227, 233, 260
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	13
Sse8387I	CCTGCAGG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	160
SsiI	CCGC	7 cut(s)	57, 87, 111, 129, 209, 215, 218
SspMI	CTAG	1 cut(s)	156
StuI	AGGCCT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	163
TaiI	ACGT	2 cut(s)	145, 233
TaqI	TCGA	2 cut(s)	139, 251
TasI	AATT	1 cut(s)	20
TauI	GCSGC	2 cut(s)	218, 221
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	186
Tth111I	GACNNNGTC	1 cut(s)	232
XspI	CTAG	1 cut(s)	156
ZraI	GACGTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.