Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000869

Physical Location & Seq

Genomic Coordinates Forward (+)

47845165 .. 47847627

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTTCCGCCTGCAGACAATTCGCCAGCAGAACATCCCTATCGTCCATCCGATCCGCCATCAGATCCAACGCCCCTAAATCCCCCTCCTCACGCTTCCCCCTCCCCACCTCGGCTCCCTCCTCCGCTCCAGTTCGCGGCTTCTCAATCTCCAGGTCTACGGGCGTGTTGGGATGCGTGCAGTCGCTGCTGCCGCTCCACAGCGCGGTGGCTGCGGCGAGGCTGACGTCAGCGCTTAGCACAACTTCGAGGAGTTGCCGGGCGCTCTCACAGGGTACTCTCTGCCGCACCTCTCCCAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.38

Weight (kDa)

12.0

Isoelectric Point (pI)

81.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455
fragaria_vesca	FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060
malus_domestica	MD04G1063100.v1.1
prunus_persica	Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1
pyrus_communis	pycom04g05680
rosa_chinensis	RchiOBHm_Chr7g0203511
rosa_laevigata	RLG00000003524
rosa_roxburghii	Rroxscaffold_3G00253760
rosa_samantha	Rh7BG205600 Rh7CG218600
rosa_wichuraiana	Rw7G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	230
AccBSI	CCGCTC	2 cut(s)	128, 196
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	2 cut(s)	138, 206
AciI	CCGC	8 cut(s)	9, 57, 126, 138, 194, 206, 215, 286
AclWI	GGATC	2 cut(s)	48, 60
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	277
AfeI	AGCGCT	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	112, 137, 205
AjnI	CCWGG	1 cut(s)	152
AlwI	GGATC	2 cut(s)	48, 60
AlwNI	CAGNNNCTG	1 cut(s)	187
Aor51HI	AGCGCT	1 cut(s)	234
ApeKI	GCWGC	3 cut(s)	187, 190, 212
AspLEI	GCGC	3 cut(s)	206, 235, 265
AsuC2I	CCSGG	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	174, 177, 199
BccI	CCATC	2 cut(s)	56, 68
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BciT130I	CCWGG	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	13
BfoI	RGCGCY	2 cut(s)	236, 266
BisI	GCNGC	7 cut(s)	139, 188, 191, 194, 213, 216, 286
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	7 cut(s)	140, 189, 192, 195, 214, 217, 287
Bme1390I	CCNGG	2 cut(s)	154, 260
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	2 cut(s)	154, 260
BmsI	GCATC	1 cut(s)	164
BpmI	CTGGAG	2 cut(s)	114, 136
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 137, 205
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	3 cut(s)	35, 48, 179
BseLI	CCNNNNNNNGG	3 cut(s)	112, 137, 205
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	3 cut(s)	79, 112, 265
BseXI	GCAGC	3 cut(s)	174, 177, 199
BseYI	CCCAGC	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	200
Bsh1236I	CGCG	2 cut(s)	138, 206
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	3 cut(s)	112, 137, 205
Bsp143I	GATC	2 cut(s)	53, 65
Bsp1720I	GCTNAGC	1 cut(s)	236
BspACI	CCGC	8 cut(s)	9, 57, 126, 138, 194, 206, 215, 286
BspFNI	CGCG	2 cut(s)	138, 206
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	2 cut(s)	48, 60
BsrBI	CCGCTC	2 cut(s)	128, 196
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	2 cut(s)	53, 65
BssNI	GRCGYC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	13, 28, 179
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	3 cut(s)	35, 48, 179
BstFNI	CGCG	2 cut(s)	138, 206
BstH2I	RGCGCY	2 cut(s)	236, 266
BstHHI	GCGC	3 cut(s)	206, 235, 265
BstKTI	GATC	2 cut(s)	56, 68
BstMBI	GATC	2 cut(s)	53, 65
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 193, 212
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	152, 258
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	2 cut(s)	138, 206
BstV1I	GCAGC	3 cut(s)	174, 177, 199
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	35, 48, 179
Cac8I	GCNNGC	3 cut(s)	13, 28, 179
CaiI	CAGNNNCTG	1 cut(s)	187
CfoI	GCGC	3 cut(s)	206, 235, 265
Csp6I	GTAC	1 cut(s)	276
CviJI	RGCY	6 cut(s)	5, 116, 141, 212, 223, 300
CviKI_1	RGCY	6 cut(s)	5, 116, 141, 212, 223, 300
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	55, 67
DpnII	GATC	2 cut(s)	53, 65
EciI	GGCGGA	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	152
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	7 cut(s)	139, 188, 191, 194, 213, 216, 286
FokI	GGATG	3 cut(s)	22, 35, 186
Fsp4HI	GCNGC	7 cut(s)	139, 188, 191, 194, 213, 216, 286
GlaI	GCGC	3 cut(s)	205, 234, 264
GluI	GCNGC	7 cut(s)	139, 188, 191, 194, 213, 216, 286
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	2 cut(s)	114, 136
HaeII	RGCGCY	2 cut(s)	236, 266
HapII	CCGG	1 cut(s)	259
HhaI	GCGC	3 cut(s)	206, 235, 265
Hin1I	GRCGYC	1 cut(s)	227
Hin6I	GCGC	3 cut(s)	204, 233, 263
HinP1I	GCGC	3 cut(s)	204, 233, 263
HpaII	CCGG	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	53, 65
Hpy8I	GTNNAC	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	15, 181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 193, 212
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	227
HspAI	GCGC	3 cut(s)	204, 233, 263
Kzo9I	GATC	2 cut(s)	53, 65
LmnI	GCTCC	3 cut(s)	121, 133, 201
LpnPI	CCDG	7 cut(s)	25, 40, 139, 144, 166, 257, 272
Lsp1109I	GCAGC	3 cut(s)	174, 177, 199
LweI	GCATC	1 cut(s)	164
MaeII	ACGT	1 cut(s)	227
MalI	GATC	2 cut(s)	55, 67
MbiI	CCGCTC	2 cut(s)	128, 196
MboI	GATC	2 cut(s)	53, 65
MflI	RGATCY	1 cut(s)	65
MluCI	AATT	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	9 cut(s)	97, 100, 113, 121, 130, 133, 213, 243, 301
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	2 cut(s)	154, 260
MvaI	CCWGG	1 cut(s)	154
MvnI	CGCG	2 cut(s)	138, 206
MwoI	GCNNNNNNNGC	3 cut(s)	187, 193, 212
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	53, 65
NlaIV	GGNNCC	1 cut(s)	117
NmeAIII	GCCGAG	1 cut(s)	92
PkrI	GCNGC	7 cut(s)	140, 189, 192, 195, 214, 217, 287
Psp6I	CCWGG	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SatI	GCNGC	7 cut(s)	139, 188, 191, 194, 213, 216, 286
Sau3AI	GATC	2 cut(s)	53, 65
ScrFI	CCNGG	2 cut(s)	154, 260
SetI	ASST	4 cut(s)	113, 158, 230, 293
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	13
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	8 cut(s)	9, 57, 126, 138, 194, 206, 215, 286
StyD4I	CCNGG	2 cut(s)	152, 258
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	20
TauI	GCSGC	4 cut(s)	141, 196, 218, 288
TseI	GCWGC	3 cut(s)	187, 190, 212
XmiI	GTMKAC	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.