Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000869

Physical Location & Seq

Genomic Coordinates Reverse (-)

10979738 .. 10982206

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19060.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTTCCGCCTGCAGACAATTCGCCAGCAGAGCGTCCCTATCCTCCATCCGATCGGCCATCAGATCCAACGCCCCTAAATCCCCCACCTCACGCTTCCCCGGCCCCGCCTCCGCTCCCTCCTCCGCTCCAGTTCGCGGCTTCTCTATCAACAGGTCTACGGGAGTGTTGGGATGCGTGCAATCTCTGCTGCCGCTCCACAGCGCGGTGGCCGCGGCGAGGCTGACGTCAGCGCTGAGCACAACTTCGAGGAGCTGCCGGGCGCTCTCACAGGGTACTCTCTGCCGCACCTCTCCCAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

10.31

Weight (kDa)

12.0

Isoelectric Point (pI)

75.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT4G17310 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455 AT5G47455
fragaria_vesca	FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060 FvH4_5g19060
malus_domestica	MD04G1063100.v1.1
prunus_persica	Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1 Prupe.5G068300_v2.0.a1
pyrus_communis	pycom04g05680
rosa_chinensis	RchiOBHm_Chr7g0203511
rosa_laevigata	RLG00000003524
rosa_roxburghii	Rroxscaffold_3G00253760
rosa_samantha	Rh7BG205600 Rh7CG218600
rosa_wichuraiana	Rw7G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	230
AccBSI	CCGCTC	3 cut(s)	116, 128, 196
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	3 cut(s)	138, 206, 215
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	2 cut(s)	57, 210
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	277
AfeI	AGCGCT	1 cut(s)	234
AfiI	CCNNNNNNNGG	3 cut(s)	137, 205, 219
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	60
Aor51HI	AGCGCT	1 cut(s)	234
AoxI	GGCC	3 cut(s)	57, 103, 210
ApeKI	GCWGC	2 cut(s)	190, 255
AspLEI	GCGC	3 cut(s)	206, 235, 265
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	2 cut(s)	102, 260
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	177, 242
BccI	CCATC	2 cut(s)	56, 68
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcnI	CCSGG	2 cut(s)	102, 260
BfmI	CTRYAG	1 cut(s)	13
BfoI	RGCGCY	2 cut(s)	236, 266
BisI	GCNGC	7 cut(s)	139, 191, 194, 213, 216, 256, 286
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	7 cut(s)	140, 192, 195, 214, 217, 257, 287
Bme1390I	CCNGG	2 cut(s)	102, 260
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	102, 260
BmsI	GCATC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	102, 260
BsaHI	GRCGYC	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	100, 213
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 205, 219
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	2 cut(s)	100, 213
BseGI	GGATG	2 cut(s)	48, 179
BseLI	CCNNNNNNNGG	3 cut(s)	137, 205, 219
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	2 cut(s)	112, 265
BseXI	GCAGC	2 cut(s)	177, 242
BseYI	CCCAGC	1 cut(s)	296
Bsh1236I	CGCG	3 cut(s)	138, 206, 215
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	3 cut(s)	59, 105, 212
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	102, 259
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	3 cut(s)	137, 205, 219
BsmFI	GGGAC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	59, 105, 212
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	53, 65
Bsp1720I	GCTNAGC	1 cut(s)	236
BspANI	GGCC	3 cut(s)	59, 105, 212
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	3 cut(s)	138, 206, 215
BspLI	GGNNCC	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	60
BsrBI	CCGCTC	3 cut(s)	116, 128, 196
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	100, 213
BssMI	GATC	2 cut(s)	53, 65
BssNI	GRCGYC	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstC8I	GCNNGC	3 cut(s)	13, 28, 179
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	48, 179
BstFNI	CGCG	3 cut(s)	138, 206, 215
BstH2I	RGCGCY	2 cut(s)	236, 266
BstHHI	GCGC	3 cut(s)	206, 235, 265
BstKTI	GATC	2 cut(s)	56, 68
BstMBI	GATC	2 cut(s)	53, 65
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 102, 187, 212
BstSCI	CCNGG	2 cut(s)	100, 258
BstSFI	CTRYAG	1 cut(s)	13
BstUI	CGCG	3 cut(s)	138, 206, 215
BstV1I	GCAGC	2 cut(s)	177, 242
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	59, 105, 212
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	48, 179
Cac8I	GCNNGC	3 cut(s)	13, 28, 179
CfoI	GCGC	3 cut(s)	206, 235, 265
Cfr13I	GGNCC	1 cut(s)	104
Cfr42I	CCGCGG	1 cut(s)	216
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	276
CviJI	RGCY	8 cut(s)	5, 59, 105, 141, 212, 223, 255, 300
CviKI_1	RGCY	8 cut(s)	5, 59, 105, 141, 212, 223, 255, 300
CviQI	GTAC	1 cut(s)	276
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	2 cut(s)	55, 67
DpnII	GATC	2 cut(s)	53, 65
EaeI	YGGCCR	2 cut(s)	57, 210
Eco47III	AGCGCT	1 cut(s)	234
FaqI	GGGAC	1 cut(s)	22
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	7 cut(s)	139, 191, 194, 213, 216, 256, 286
FokI	GGATG	2 cut(s)	35, 186
Fsp4HI	GCNGC	7 cut(s)	139, 191, 194, 213, 216, 256, 286
GlaI	GCGC	3 cut(s)	205, 234, 264
GluI	GCNGC	7 cut(s)	139, 191, 194, 213, 216, 256, 286
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	2 cut(s)	236, 266
HaeIII	GGCC	3 cut(s)	59, 105, 212
HapII	CCGG	2 cut(s)	102, 259
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	3 cut(s)	206, 235, 265
Hin1I	GRCGYC	1 cut(s)	227
Hin6I	GCGC	3 cut(s)	204, 233, 263
HinP1I	GCGC	3 cut(s)	204, 233, 263
HpaII	CCGG	2 cut(s)	102, 259
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	53, 65
Hpy8I	GTNNAC	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	2 cut(s)	15, 181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 102, 187, 212
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	227
HspAI	GCGC	3 cut(s)	204, 233, 263
KspI	CCGCGG	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	53, 65
LmnI	GCTCC	4 cut(s)	121, 133, 201, 252
LpnPI	CCDG	7 cut(s)	25, 40, 115, 139, 144, 257, 272
Lsp1109I	GCAGC	2 cut(s)	177, 242
LweI	GCATC	1 cut(s)	164
MaeII	ACGT	1 cut(s)	227
MalI	GATC	2 cut(s)	55, 67
MbiI	CCGCTC	3 cut(s)	116, 128, 196
MboI	GATC	2 cut(s)	53, 65
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	55, 100, 121, 130, 133, 213, 243, 301
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	102, 259
MspR9I	CCNGG	2 cut(s)	102, 260
MvnI	CGCG	3 cut(s)	138, 206, 215
MwoI	GCNNNNNNNGC	4 cut(s)	32, 102, 187, 212
NciI	CCSGG	2 cut(s)	102, 260
NdeII	GATC	2 cut(s)	53, 65
NlaIV	GGNNCC	1 cut(s)	106
PkrI	GCNGC	7 cut(s)	140, 192, 195, 214, 217, 257, 287
Ple19I	CGATCG	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	65
PvuI	CGATCG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SacII	CCGCGG	1 cut(s)	216
SatI	GCNGC	7 cut(s)	139, 191, 194, 213, 216, 256, 286
Sau3AI	GATC	2 cut(s)	53, 65
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	2 cut(s)	102, 260
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	5 cut(s)	92, 158, 230, 257, 293
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	13
Sfr303I	CCGCGG	1 cut(s)	216
SgrBI	CCGCGG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	100, 258
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	20
TauI	GCSGC	5 cut(s)	141, 196, 215, 218, 288
TseI	GCWGC	2 cut(s)	190, 255
XmiI	GTMKAC	1 cut(s)	158
ZraI	GACGTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.