AT4G17670

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0016079
Physical Location & Seq
Reverse (-)
9833491 .. 9834859
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17670.1

Sequence Viewer

Length: 480 bp
ATGGAGGTTTCGATGAGAAAGCCTTATTTCATAGAAGAAGAAGACGATGGTTTTGTTTCTTTATCTGAGATGGAAGCTGGAGTTTCAAGTCCTTCTTGTTACAACTATCCTCAGAGTTATTATTATAACCATCATCATCATCAGTACTCTGTTTCATCTCCCAGATCTGGAAAATTTCATGATTTTAGATTCGACAATAGCTATTACGGTTATGGACAGCCTCATTTCTTGGACTCTTGCTTCCTCTGCAAGAAACGTCTTGGTGATAACAGAGACATCTTCATGTACAGAGGAGACACACCGTTCTGTAGTGAAGAGTGTAGAGAAGAACAGATAGAAAGAGACGAAGCAAAAGAGAAGAAACAGAGTCTGTCTACATCTGTGAAAGCTATGAGAAGAAATGAAAAGCGAAGCTCTTCTTCTTCTCCAACTAGATCTCGTAACTATGCTTTCCGCACTGGAACTGTTGCTGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

159

Amino Acids

18.59

Weight (kDa)

7.0

Isoelectric Point (pI)

80.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 70 - 118 9.3e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17670
fragaria_vesca FvH4_5g20840
malus_domestica MD06G1043700.v1.1
prunus_persica Prupe.5G050400_v2.0.a1
pyrus_communis pycom06g03670
rosa_chinensis RchiOBHm_Chr7g0207851
rosa_laevigata RLG00000003282
rosa_multiflora Rmu_ssc0000451.1_g000011
rosa_roxburghii Rroxscaffold_3G00251100
rosa_rugosa Rorug07G0099800
rosa_samantha Rh7AG233100 Rh7BG228500 Rh7CG248100 Rh7DG239100
rosa_wichuraiana Rw7G020000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AccI GTMKAC 1 cut(s) 374
AciI CCGC 1 cut(s) 454
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 2 cut(s) 146, 287
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 1 cut(s) 87
AluBI AGCT 4 cut(s) 77, 201, 389, 414
AluI AGCT 4 cut(s) 77, 201, 389, 414
Alw26I GTCTC 3 cut(s) 267, 288, 336
AlwNI CAGNNNCTG 1 cut(s) 370
ApeKI GCWGC 2 cut(s) 470, 473
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
Asp700I GAANNNNTTC 1 cut(s) 415
AsuHPI GGTGA 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 457, 460
BccI CCATC 3 cut(s) 41, 64, 138
BcoDI GTCTC 3 cut(s) 267, 288, 336
BfaI CTAG 1 cut(s) 432
BfmI CTRYAG 1 cut(s) 307
BglII AGATCT 2 cut(s) 164, 434
BisI GCNGC 2 cut(s) 471, 474
BlsI GCNGC 2 cut(s) 472, 475
BmcAI AGTACT 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 57, 125
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 457, 460
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 3 cut(s) 267, 288, 336
BsmBI CGTCTC 1 cut(s) 336
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 164, 434
BspACI CCGC 1 cut(s) 454
BspCNI CTCAG 2 cut(s) 58, 124
BspHI TCATGA 1 cut(s) 178
BspQI GCTCTTC 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 463
BssMI GATC 2 cut(s) 164, 434
Bst4CI ACNGT 3 cut(s) 209, 303, 466
Bst6I CTCTTC 2 cut(s) 309, 421
BstAUI TGTACA 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 66, 111
BstKTI GATC 2 cut(s) 167, 437
BstMAI GTCTC 3 cut(s) 267, 288, 336
BstMBI GATC 2 cut(s) 164, 434
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 457, 460
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 164, 434
BstYI RGATCY 2 cut(s) 164, 434
BtsIMutI CAGTG 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 370
CciI TCATGA 1 cut(s) 178
Csp6I GTAC 2 cut(s) 145, 286
CviAII CATG 2 cut(s) 179, 283
CviJI RGCY 6 cut(s) 22, 77, 201, 220, 389, 414
CviKI_1 RGCY 6 cut(s) 22, 77, 201, 220, 389, 414
CviQI GTAC 2 cut(s) 145, 286
DdeI CTNAG 2 cut(s) 66, 111
DpnI GATC 2 cut(s) 166, 436
DpnII GATC 2 cut(s) 164, 434
Eam1104I CTCTTC 2 cut(s) 309, 421
EarI CTCTTC 2 cut(s) 309, 421
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 2 cut(s) 182, 286
FaiI YATR 7 cut(s) 32, 126, 180, 213, 284, 392, 447
FalI AAGNNNNNCTT 4 cut(s) 79, 111, 403, 435
FatI CATG 2 cut(s) 178, 282
FblI GTMKAC 1 cut(s) 374
Fnu4HI GCNGC 2 cut(s) 471, 474
Fsp4HI GCNGC 2 cut(s) 471, 474
FspBI CTAG 1 cut(s) 432
GluI GCNGC 2 cut(s) 471, 474
GsuI CTGGAG 1 cut(s) 99
Hin1II CATG 2 cut(s) 182, 286
HinfI GANTC 3 cut(s) 189, 233, 367
HphI GGTGA 1 cut(s) 275
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 2 cut(s) 67, 114
Hpy188III TCNNGA 2 cut(s) 168, 179
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 3 cut(s) 209, 303, 466
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 66, 111
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 2 cut(s) 182, 286
Kzo9I GATC 2 cut(s) 164, 434
LguI GCTCTTC 1 cut(s) 421
LpnPI CCDG 4 cut(s) 63, 153, 175, 444
Lsp1109I GCAGC 2 cut(s) 457, 460
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 2 cut(s) 98, 440
MalI GATC 2 cut(s) 166, 436
MboI GATC 2 cut(s) 164, 434
MflI RGATCY 2 cut(s) 164, 434
MluCI AATT 1 cut(s) 173
MlyI GAGTC 2 cut(s) 227, 376
MmeI TCCRAC 1 cut(s) 452
MnlI CCTC 4 cut(s) 120, 231, 254, 284
MroXI GAANNNNTTC 1 cut(s) 415
MslI CAYNNNNRTG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeII GATC 2 cut(s) 164, 434
NlaIII CATG 2 cut(s) 182, 286
PagI TCATGA 1 cut(s) 178
PciSI GCTCTTC 1 cut(s) 421
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 2 cut(s) 472, 475
PleI GAGTC 2 cut(s) 227, 375
PpsI GAGTC 2 cut(s) 227, 375
PsiI TTATAA 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 2 cut(s) 164, 434
RsaI GTAC 2 cut(s) 146, 287
RsaNI GTAC 2 cut(s) 145, 286
RseI CAYNNNNRTG 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 421
SatI GCNGC 2 cut(s) 471, 474
Sau3AI GATC 2 cut(s) 164, 434
ScaI AGTACT 1 cut(s) 146
SchI GAGTC 2 cut(s) 227, 376
SetI ASST 6 cut(s) 9, 79, 203, 259, 391, 416
SfcI CTRYAG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 1 cut(s) 173
SsiI CCGC 1 cut(s) 454
SspMI CTAG 1 cut(s) 432
TaaI ACNGT 3 cut(s) 209, 303, 466
TaiI ACGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 11, 192
TasI AATT 1 cut(s) 173
TatI WGTACW 2 cut(s) 144, 285
TfiI GAWTC 1 cut(s) 189
TscAI CASTG 1 cut(s) 463
TseI GCWGC 2 cut(s) 470, 473
TspDTI ATGAA 5 cut(s) 19, 144, 167, 271, 417
TspRI CASTG 1 cut(s) 463
XapI RAATTY 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 1 cut(s) 432
ZrmI AGTACT 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.