RLG00000003282

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016079
Physical Location & Seq
Forward (+)
46594921 .. 46595704
784 bp
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UTR
Exon/CDS
Intron
RLM00000003282

Sequence Viewer

Length: 489 bp
ATGGACTCGGTTTCAAGCGCAAGAAGGCCCTGTTTCATCGAGGAGGATGATGAGTTGGCCTCGCTGGCTGATATGGAAGCTGGGTTTTCCGGGAGTCAGCGTCCCTTTTTTTCTAGGCCCATGTGTTATTCGAGGAAGGGGAGCTTTAGAAACCTATCGGTGATGGGGTCGAACTCGTCTCTGTCCCCGAGATCTGGGAGGTTCTGGGATGCTAGATTTGAGGAGCACCAGCCTCATTTCTTGGAGGCTTGTTTTCTCTGCAAGAAACCTCTTGGCGATAATAGAGACATCTTCATGTACAGAGGTGACACTCCCTTCTGTAGTGAAGAGTGCAGAGGTGAGCAGATAGAGATAGATGAAGCTAGTGAGAAGAACTGCAATTTCTCGTCTTCCATGAAAGCCTTGAGAAAGAGGGAGCAAAGAAAATCCAGCTCTCCAAACACCGCAAAGGACTACCCTTTCCGGCCAGGCACAGTAGCAGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

163

Amino Acids

18.37

Weight (kDa)

6.73

Isoelectric Point (pI)

63.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 72 - 121 9.5e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17670
fragaria_vesca FvH4_5g20840
malus_domestica MD06G1043700.v1.1
prunus_persica Prupe.5G050400_v2.0.a1
pyrus_communis pycom06g03670
rosa_chinensis RchiOBHm_Chr7g0207851
rosa_laevigata RLG00000003282
rosa_multiflora Rmu_ssc0000451.1_g000011
rosa_roxburghii Rroxscaffold_3G00251100
rosa_rugosa Rorug07G0099800
rosa_samantha Rh7AG233100 Rh7BG228500 Rh7CG248100 Rh7DG239100
rosa_wichuraiana Rw7G020000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 444
AcoI YGGCCR 1 cut(s) 464
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 1 cut(s) 15
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 5 cut(s) 80, 144, 362, 432, 485
AluI AGCT 5 cut(s) 80, 144, 362, 432, 485
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 2 cut(s) 183, 279
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 4 cut(s) 26, 57, 116, 464
ApeKI GCWGC 2 cut(s) 479, 482
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 27, 117
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 172, 317, 350
AvaI CYCGRG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 468
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 183, 279
BfaI CTAG 3 cut(s) 114, 213, 363
BfmI CTRYAG 1 cut(s) 319
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 191
BisI GCNGC 2 cut(s) 480, 483
BlsI GCNGC 2 cut(s) 481, 484
Bme1390I CCNGG 2 cut(s) 91, 468
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 27, 117
BmrFI CCNGG 2 cut(s) 91, 468
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 468
BseGI GGATG 2 cut(s) 52, 214
BseLI CCNNNNNNNGG 1 cut(s) 194
BseRI GAGGAG 2 cut(s) 56, 236
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 352
BshFI GGCC 4 cut(s) 28, 59, 118, 466
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 90, 463
BslFI GGGAC 2 cut(s) 87, 169
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 183, 279
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 87, 169
BsnI GGCC 4 cut(s) 28, 59, 118, 466
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 444
BspANI GGCC 4 cut(s) 28, 59, 118, 466
BsrGI TGTACA 1 cut(s) 297
BssMI GATC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 321
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 66
BstF5I GGATG 2 cut(s) 52, 214
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 2 cut(s) 183, 279
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 2 cut(s) 89, 466
BstSFI CTRYAG 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 4 cut(s) 28, 59, 118, 466
BtsCI GGATG 2 cut(s) 52, 214
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 27, 117
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 298
CviAII CATG 3 cut(s) 121, 295, 394
CviQI GTAC 1 cut(s) 298
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 466
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 3 cut(s) 124, 298, 397
FaiI YATR 4 cut(s) 74, 122, 296, 395
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 87, 169
FatI CATG 3 cut(s) 120, 294, 393
Fnu4HI GCNGC 2 cut(s) 480, 483
FokI GGATG 2 cut(s) 59, 221
Fsp4HI GCNGC 2 cut(s) 480, 483
FspBI CTAG 3 cut(s) 114, 213, 363
GlaI GCGC 1 cut(s) 19
GluI GCNGC 2 cut(s) 480, 483
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 4 cut(s) 28, 59, 118, 466
HapII CCGG 2 cut(s) 90, 463
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 124, 298, 397
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 2 cut(s) 5, 94
HpaII CCGG 2 cut(s) 90, 463
HphI GGTGA 3 cut(s) 172, 317, 350
HpyAV CCTTC 3 cut(s) 18, 130, 325
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 3 cut(s) 261, 333, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
Hsp92II CATG 3 cut(s) 124, 298, 397
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 3 cut(s) 141, 223, 415
LweI GCATC 1 cut(s) 199
MaeI CTAG 3 cut(s) 114, 213, 363
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 4 cut(s) 283, 338, 381, 382
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 379
MlyI GAGTC 1 cut(s) 103
MseI TTAA 1 cut(s) 487
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 2 cut(s) 90, 463
MspR9I CCNGG 2 cut(s) 91, 468
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 191
NlaIII CATG 3 cut(s) 124, 298, 397
NmuCI GTSAC 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 2 cut(s) 481, 484
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 1 cut(s) 466
PspPI GGNCC 2 cut(s) 27, 117
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 487
SatI GCNGC 2 cut(s) 480, 483
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 2 cut(s) 27, 117
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 91, 468
SduI GDGCHC 1 cut(s) 228
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 1 cut(s) 379
SsiI CCGC 1 cut(s) 444
SspMI CTAG 3 cut(s) 114, 213, 363
StyD4I CCNGG 2 cut(s) 89, 466
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 3 cut(s) 39, 131, 170
TasI AATT 1 cut(s) 379
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 1 cut(s) 487
Tru9I TTAA 1 cut(s) 487
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 2 cut(s) 479, 482
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 4 cut(s) 25, 283, 372, 410
XspI CTAG 3 cut(s) 114, 213, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.