FvH4_5g20840

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016079
Physical Location & Seq
Reverse (-)
12416313 .. 12417758
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20840.t1

Sequence Viewer

Length: 480 bp
ATGGACTCGGTTTCAAGCGCAAGGAGGCCCTGTTTCATCGAGGAAGATGACGGGTTGGCCTCGCTGGCTGATATGGAAGCTGGGTTTTCCGGGACTCAGCTGCAGCATCCGTTTTTTTCAAGGCCCATGTGTTATACCAGGAAGATGGGTTCTTTTGGGTCGAACTCGTCTTTGTCGCCGAGATCTGGGAGGTTCTGGGATGCGAGATTTGAAGAGCATCAGCCTCATTTCTTGGAGGCTTGTTTCCTCTGCAAGAAACCTCTTGGCGATAATAGAGACATCTTCATGTACAGAGGTGACACTCCCTTCTGTAGTGAAGAGTGCAGAGATGAGCAGATAGAGATAGATGAAGCTAAAGAGAAGAACTGGAATCGCACTTCTTCCATGAAAGCCTTGAGAAAGAGGGAGCAAAGGAAATCCAGTTCAGCAAACACGGCCAAGGAATACTCTTTCCGGCCAGGCACAGTAGCAGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

160

Amino Acids

18.16

Weight (kDa)

6.83

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 69 - 119 2.6e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17670
fragaria_vesca FvH4_5g20840
malus_domestica MD06G1043700.v1.1
prunus_persica Prupe.5G050400_v2.0.a1
pyrus_communis pycom06g03670
rosa_chinensis RchiOBHm_Chr7g0207851
rosa_laevigata RLG00000003282
rosa_multiflora Rmu_ssc0000451.1_g000011
rosa_roxburghii Rroxscaffold_3G00251100
rosa_rugosa Rorug07G0099800
rosa_samantha Rh7AG233100 Rh7BG228500 Rh7CG248100 Rh7DG239100
rosa_wichuraiana Rw7G020000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 435, 455
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 3 cut(s) 15, 120, 212
AjnI CCWGG 2 cut(s) 137, 457
AloI GAACNNNNNNTCC 4 cut(s) 133, 165, 406, 438
AluBI AGCT 4 cut(s) 80, 100, 353, 476
AluI AGCT 4 cut(s) 80, 100, 353, 476
Alw26I GTCTC 1 cut(s) 270
AoxI GGCC 5 cut(s) 26, 57, 122, 435, 455
ApeKI GCWGC 4 cut(s) 100, 103, 470, 473
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 27, 123
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 308
BbvI GCAGC 2 cut(s) 87, 115
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 450
BciT130I CCWGG 2 cut(s) 139, 459
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 270
BfmI CTRYAG 2 cut(s) 101, 310
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 182
BisI GCNGC 4 cut(s) 101, 104, 471, 474
BlsI GCNGC 4 cut(s) 102, 105, 472, 475
Bme1390I CCNGG 3 cut(s) 91, 139, 459
BmgT120I GGNCC 2 cut(s) 27, 123
BmrFI CCNGG 3 cut(s) 91, 139, 459
BmsI GCATC 3 cut(s) 115, 190, 226
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 371, 420
BseBI CCWGG 2 cut(s) 139, 459
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 2 cut(s) 106, 205
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 371, 420
BseXI GCAGC 2 cut(s) 87, 115
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 343
BshFI GGCC 5 cut(s) 28, 59, 124, 437, 457
BsiSI CCGG 2 cut(s) 90, 454
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 5 cut(s) 28, 59, 124, 437, 457
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 1 cut(s) 182
BspANI GGCC 5 cut(s) 28, 59, 124, 437, 457
BspCNI CTCAG 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 105
BspQI GCTCTTC 1 cut(s) 207
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 2 cut(s) 371, 420
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 139, 459
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 2 cut(s) 207, 312
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 106, 205
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 185
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 65, 434
BstNI CCWGG 2 cut(s) 139, 459
BstSCI CCNGG 3 cut(s) 89, 137, 457
BstSFI CTRYAG 2 cut(s) 101, 310
BstV1I GCAGC 2 cut(s) 87, 115
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 5 cut(s) 28, 59, 124, 437, 457
BtsCI GGATG 2 cut(s) 106, 205
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 27, 123
Csp6I GTAC 1 cut(s) 289
CviAII CATG 3 cut(s) 127, 286, 385
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
EaeI YGGCCR 2 cut(s) 435, 455
Eam1104I CTCTTC 2 cut(s) 207, 312
EarI CTCTTC 2 cut(s) 207, 312
Eco130I CCWWGG 1 cut(s) 438
EcoO109I RGGNCCY 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 137, 457
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 3 cut(s) 130, 289, 388
FaiI YATR 5 cut(s) 74, 128, 135, 287, 386
FaqI GGGAC 1 cut(s) 106
FatI CATG 3 cut(s) 126, 285, 384
Fnu4HI GCNGC 4 cut(s) 101, 104, 471, 474
FokI GGATG 2 cut(s) 93, 212
Fsp4HI GCNGC 4 cut(s) 101, 104, 471, 474
GlaI GCGC 1 cut(s) 19
GluI GCNGC 4 cut(s) 101, 104, 471, 474
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 5 cut(s) 28, 59, 124, 437, 457
HapII CCGG 2 cut(s) 90, 454
HhaI GCGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 130, 289, 388
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 3 cut(s) 5, 94, 370
HpaII CCGG 2 cut(s) 90, 454
HphI GGTGA 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 3 cut(s) 103, 252, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 434
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 3 cut(s) 130, 289, 388
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 182
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 2 cut(s) 87, 115
LweI GCATC 3 cut(s) 115, 190, 226
MaeIII GTNAC 1 cut(s) 296
MalI GATC 1 cut(s) 184
MboI GATC 1 cut(s) 182
MboII GAAGA 7 cut(s) 56, 154, 224, 274, 329, 372, 373
MflI RGATCY 1 cut(s) 182
MlyI GAGTC 1 cut(s) 88
MseI TTAA 1 cut(s) 478
MslI CAYNNNNRTG 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 2 cut(s) 90, 454
MspR9I CCNGG 3 cut(s) 91, 139, 459
MvaI CCWGG 2 cut(s) 139, 459
MwoI GCNNNNNNNGC 2 cut(s) 65, 434
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 182
NlaIII CATG 3 cut(s) 130, 289, 388
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 1 cut(s) 296
PciSI GCTCTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 4 cut(s) 102, 105, 472, 475
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 137, 457
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 2 cut(s) 137, 457
PspPI GGNCC 2 cut(s) 27, 123
PstI CTGCAG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 478
SatI GCNGC 4 cut(s) 101, 104, 471, 474
Sau3AI GATC 1 cut(s) 182
Sau96I GGNCC 2 cut(s) 27, 123
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 3 cut(s) 91, 139, 459
SetI ASST 7 cut(s) 82, 102, 194, 262, 298, 355, 478
SfaNI GCATC 3 cut(s) 115, 190, 226
SfcI CTRYAG 2 cut(s) 101, 310
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
StyD4I CCNGG 3 cut(s) 89, 137, 457
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 39, 161
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 1 cut(s) 478
Tru9I TTAA 1 cut(s) 478
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 4 cut(s) 100, 103, 470, 473
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 4 cut(s) 25, 274, 363, 401
TspGWI ACGGA 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.