Rw7G020000

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016079
Physical Location & Seq
Reverse (-)
22388647 .. 22389435
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020000.1

Sequence Viewer

Length: 468 bp
ATGGACTCGGTTTCGAGCGCAAGGAGGCCCTGTTTCATAGAGGAAGACGATGGGTTGGCCTCGCTGGCTGATATGGAAGCTGGGTTTTCCGGGAGTCAGCATCCCTTTTTTTCTAGGCCCATGTGTTATTCGAGGAAGGGAAGCTTTAGAAACCTATCAGTGATGGGGTCGAACTCGTCTTTGTCCCCGAGATCTGGGAGGTTCTGGGATGCCAGATTTGAGGAGCACCAGCCTCATTTCTTGGAGGCTTGCTTTCTCTGCAAGAAACCTCTTGGCGATAACAGAGACATCTTCATGTACAGTGAAGAGTGCAGAGGTGAGCAGATAGAGATAGATGAAGCTAAAGAGAAGAACTGTAATCTCTCGTCTTCCATGAAAGCCTTGAGAAATAGGGAGCAAAGGAAATCCAGCTCCCCAAACACCGCAAAGGACTACCCTTTCCGGCCAGGCACAGTAGCAGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

155

Amino Acids

17.49

Weight (kDa)

6.82

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 72 - 115 1e-13 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17670
fragaria_vesca FvH4_5g20840
malus_domestica MD06G1043700.v1.1
prunus_persica Prupe.5G050400_v2.0.a1
pyrus_communis pycom06g03670
rosa_chinensis RchiOBHm_Chr7g0207851
rosa_laevigata RLG00000003282
rosa_multiflora Rmu_ssc0000451.1_g000011
rosa_roxburghii Rroxscaffold_3G00251100
rosa_rugosa Rorug07G0099800
rosa_samantha Rh7AG233100 Rh7BG228500 Rh7CG248100 Rh7DG239100
rosa_wichuraiana Rw7G020000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 443
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 194
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 5 cut(s) 80, 144, 341, 411, 464
AluI AGCT 5 cut(s) 80, 144, 341, 411, 464
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 4 cut(s) 26, 57, 116, 443
ApeKI GCWGC 2 cut(s) 458, 461
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 27, 117
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 187
BbsI GAAGAC 2 cut(s) 51, 360
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 2 cut(s) 44, 157
BciT130I CCWGG 1 cut(s) 447
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 191
BisI GCNGC 2 cut(s) 459, 462
BlsI GCNGC 2 cut(s) 460, 463
Bme1390I CCNGG 2 cut(s) 91, 447
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 27, 117
BmrFI CCNGG 2 cut(s) 91, 447
BmsI GCATC 2 cut(s) 109, 199
BpiI GAAGAC 2 cut(s) 51, 360
BpuEI CTTGAG 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 100, 214
BseLI CCNNNNNNNGG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 236
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 331
BshFI GGCC 4 cut(s) 28, 59, 118, 445
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 2 cut(s) 90, 442
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 4 cut(s) 28, 59, 118, 445
BsoBI CYCGRG 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 1 cut(s) 191
BspACI CCGC 1 cut(s) 423
BspANI GGCC 4 cut(s) 28, 59, 118, 445
BsrGI TGTACA 1 cut(s) 297
BssMI GATC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 302, 356, 454
Bst6I CTCTTC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 66, 250
BstF5I GGATG 2 cut(s) 100, 214
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 194
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 65, 258
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 2 cut(s) 89, 445
BstV2I GAAGAC 2 cut(s) 51, 360
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BsuRI GGCC 4 cut(s) 28, 59, 118, 445
BtsCI GGATG 2 cut(s) 100, 214
BtsIMutI CAGTG 2 cut(s) 165, 307
Cac8I GCNNGC 2 cut(s) 66, 250
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 27, 117
Csp6I GTAC 1 cut(s) 298
CviAII CATG 3 cut(s) 121, 295, 373
CviQI GTAC 1 cut(s) 298
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 443
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 445
FaeI CATG 3 cut(s) 124, 298, 376
FaiI YATR 5 cut(s) 38, 74, 122, 296, 374
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 169
FatI CATG 3 cut(s) 120, 294, 372
Fnu4HI GCNGC 2 cut(s) 459, 462
FokI GGATG 2 cut(s) 87, 221
Fsp4HI GCNGC 2 cut(s) 459, 462
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 19
GluI GCNGC 2 cut(s) 459, 462
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 4 cut(s) 28, 59, 118, 445
HapII CCGG 2 cut(s) 90, 442
HhaI GCGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 124, 298, 376
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 2 cut(s) 5, 94
HpaII CCGG 2 cut(s) 90, 442
HphI GGTGA 1 cut(s) 329
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 302, 356, 454
HpyCH4V TGCA 2 cut(s) 261, 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 258
Hsp92II CATG 3 cut(s) 124, 298, 376
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 3 cut(s) 223, 394, 416
LweI GCATC 2 cut(s) 109, 199
MaeI CTAG 1 cut(s) 114
MalI GATC 1 cut(s) 193
MboI GATC 1 cut(s) 191
MboII GAAGA 5 cut(s) 56, 283, 317, 360, 361
MflI RGATCY 1 cut(s) 191
MhlI GDGCHC 1 cut(s) 228
MlyI GAGTC 1 cut(s) 103
MseI TTAA 1 cut(s) 466
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 2 cut(s) 90, 442
MspR9I CCNGG 2 cut(s) 91, 447
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 65, 258
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 191
NlaIII CATG 3 cut(s) 124, 298, 376
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 2 cut(s) 460, 463
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 1 cut(s) 445
PspPI GGNCC 2 cut(s) 27, 117
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 1 cut(s) 466
SatI GCNGC 2 cut(s) 459, 462
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 2 cut(s) 27, 117
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 91, 447
SduI GDGCHC 1 cut(s) 228
SetI ASST 9 cut(s) 82, 146, 156, 203, 271, 319, 343, 413, 466
SfaNI GCATC 2 cut(s) 109, 199
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
SsiI CCGC 1 cut(s) 423
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 89, 445
TaaI ACNGT 3 cut(s) 302, 356, 454
TaqI TCGA 3 cut(s) 14, 131, 170
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 1 cut(s) 466
Tru9I TTAA 1 cut(s) 466
TscAI CASTG 2 cut(s) 165, 307
TseI GCWGC 2 cut(s) 458, 461
TspDTI ATGAA 4 cut(s) 25, 283, 351, 389
TspRI CASTG 2 cut(s) 165, 307
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.