Rh7BG228500

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016079
Physical Location & Seq
Reverse (-)
19843643 .. 19846039
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG228500.1

Sequence Viewer

Length: 492 bp
ATGGACTCGGTTTCGAGCGCAAGGAGGCCCTGTTTCATCGAGGAAGATGATGGGTTGGCCTCGCTGGCTGATATGGAAGCTGGGTTTTCCGGGAGTCAGCAGCATCCCTTTTTTTCTAGGCCCATGTGTTATTCGAGGAAGGGGAGCTTTAGAAACCTATCGGTGATGGGGTCGAACTCGTCTTTGTCCCCGAGATCTGGGAGGTTCTGGGATGCCAGGTTTGAGGAGCACCAGCCTCATTTCTTGGAGGCTTGTTTCCTCTGCAAGAAACCTCTTGGCGATAACAGAGACATCTTCATGTACAGAGGTGACACTCCCTTCTGTAGTGAAGAGTGCAGAGGTGAGCAGATAGAGATAGATGAAGCTAATGAGAAGAACTGGAATCTCTCGTCTTCCATGAAAGCCTTGAGAAAGAGGGAGCAAAGGAAATCCAGCTCCCCGAACACCGCAAAGGACTACCCTTTCCGGCCAGGCACAGTAGCAGCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

163

Amino Acids

18.48

Weight (kDa)

6.82

Isoelectric Point (pI)

63.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 73 - 122 7.4e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17670
fragaria_vesca FvH4_5g20840
malus_domestica MD06G1043700.v1.1
prunus_persica Prupe.5G050400_v2.0.a1
pyrus_communis pycom06g03670
rosa_chinensis RchiOBHm_Chr7g0207851
rosa_laevigata RLG00000003282
rosa_multiflora Rmu_ssc0000451.1_g000011
rosa_roxburghii Rroxscaffold_3G00251100
rosa_rugosa Rorug07G0099800
rosa_samantha Rh7AG233100 Rh7BG228500 Rh7CG248100 Rh7DG239100
rosa_wichuraiana Rw7G020000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 467
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 197
AjnI CCWGG 2 cut(s) 215, 469
AluBI AGCT 5 cut(s) 80, 147, 365, 435, 488
AluI AGCT 5 cut(s) 80, 147, 365, 435, 488
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 282
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 4 cut(s) 26, 57, 119, 467
ApeKI GCWGC 3 cut(s) 100, 482, 485
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 27, 120
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 3 cut(s) 175, 320, 353
AvaI CYCGRG 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 112
BccI CCATC 2 cut(s) 44, 160
BciT130I CCWGG 2 cut(s) 217, 471
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 322
BglI GCCNNNNNGGC 1 cut(s) 65
BglII AGATCT 1 cut(s) 194
BisI GCNGC 3 cut(s) 101, 483, 486
BlsI GCNGC 3 cut(s) 102, 484, 487
Bme1390I CCNGG 3 cut(s) 91, 217, 471
BmeT110I CYCGRG 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 27, 120
BmrFI CCNGG 3 cut(s) 91, 217, 471
BmsI GCATC 2 cut(s) 112, 202
BpiI GAAGAC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 383
BseBI CCWGG 2 cut(s) 217, 471
BseGI GGATG 2 cut(s) 103, 217
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 112
BseYI CCCAGC 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 355
BshFI GGCC 4 cut(s) 28, 59, 121, 469
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 2 cut(s) 90, 466
BslFI GGGAC 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 172
BsnI GGCC 4 cut(s) 28, 59, 121, 469
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 231
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 1 cut(s) 194
BspACI CCGC 1 cut(s) 447
BspANI GGCC 4 cut(s) 28, 59, 121, 469
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 383
BssMI GATC 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 217, 471
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 66
BstF5I GGATG 2 cut(s) 103, 217
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 1 cut(s) 197
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 2 cut(s) 217, 471
BstSCI CCNGG 3 cut(s) 89, 215, 469
BstSFI CTRYAG 1 cut(s) 322
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 4 cut(s) 28, 59, 121, 469
BtsCI GGATG 2 cut(s) 103, 217
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 27, 120
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 124, 298, 397
CviQI GTAC 1 cut(s) 301
DpnI GATC 1 cut(s) 196
DpnII GATC 1 cut(s) 194
EaeI YGGCCR 1 cut(s) 467
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco88I CYCGRG 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 215, 469
FaeI CATG 3 cut(s) 127, 301, 400
FaiI YATR 4 cut(s) 74, 125, 299, 398
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 172
FatI CATG 3 cut(s) 123, 297, 396
Fnu4HI GCNGC 3 cut(s) 101, 483, 486
FokI GGATG 2 cut(s) 90, 224
Fsp4HI GCNGC 3 cut(s) 101, 483, 486
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 19
GluI GCNGC 3 cut(s) 101, 483, 486
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 4 cut(s) 28, 59, 121, 469
HapII CCGG 2 cut(s) 90, 466
HhaI GCGC 1 cut(s) 20
Hin1II CATG 3 cut(s) 127, 301, 400
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HinfI GANTC 3 cut(s) 5, 94, 382
HpaII CCGG 2 cut(s) 90, 466
HphI GGTGA 3 cut(s) 175, 320, 353
HpyAV CCTTC 2 cut(s) 133, 328
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4V TGCA 2 cut(s) 264, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
Hsp92II CATG 3 cut(s) 127, 301, 400
HspAI GCGC 1 cut(s) 18
Kzo9I GATC 1 cut(s) 194
LmnI GCTCC 4 cut(s) 144, 226, 418, 440
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 112, 202
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 196
MboI GATC 1 cut(s) 194
MboII GAAGA 5 cut(s) 56, 286, 341, 384, 385
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 231
MlyI GAGTC 1 cut(s) 103
MseI TTAA 1 cut(s) 490
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 2 cut(s) 90, 466
MspR9I CCNGG 3 cut(s) 91, 217, 471
MvaI CCWGG 2 cut(s) 217, 471
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 194
NlaIII CATG 3 cut(s) 127, 301, 400
NmuCI GTSAC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 3 cut(s) 102, 484, 487
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 215, 469
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 2 cut(s) 215, 469
PspPI GGNCC 2 cut(s) 27, 120
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 3 cut(s) 101, 483, 486
Sau3AI GATC 1 cut(s) 194
Sau96I GGNCC 2 cut(s) 27, 120
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 3 cut(s) 91, 217, 471
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 112, 202
SfcI CTRYAG 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SsiI CCGC 1 cut(s) 447
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 3 cut(s) 89, 215, 469
TaaI ACNGT 1 cut(s) 478
TaqI TCGA 4 cut(s) 14, 39, 134, 173
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 3 cut(s) 100, 482, 485
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 25, 286, 375, 413
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.