zinc-finger of the FCS-type, C2-C2
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17670 |
| fragaria_vesca | FvH4_5g20840 |
| malus_domestica | MD06G1043700.v1.1 |
| prunus_persica | Prupe.5G050400_v2.0.a1 |
| pyrus_communis | pycom06g03670 |
| rosa_chinensis | RchiOBHm_Chr7g0207851 |
| rosa_laevigata | RLG00000003282 |
| rosa_multiflora | Rmu_ssc0000451.1_g000011 |
| rosa_roxburghii | Rroxscaffold_3G00251100 |
| rosa_rugosa | Rorug07G0099800 |
| rosa_samantha | Rh7AG233100 Rh7BG228500 Rh7CG248100 Rh7DG239100 |
| rosa_wichuraiana | Rw7G020000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 209, 259 |
| AciI | CCGC | 2 cut(s) | 214, 507 |
| AcuI | CTGAAG | 1 cut(s) | 136 |
| AdeI | CACNNNGTG | 1 cut(s) | 293 |
| AfaI | GTAC | 1 cut(s) | 317 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 209, 259 |
| AgsI | TTSAA | 2 cut(s) | 117, 236 |
| AluBI | AGCT | 3 cut(s) | 83, 150, 266 |
| AluI | AGCT | 3 cut(s) | 83, 150, 266 |
| Alw26I | GTCTC | 1 cut(s) | 297 |
| AoxI | GGCC | 4 cut(s) | 29, 60, 119, 378 |
| ApeKI | GCWGC | 4 cut(s) | 18, 144, 147, 503 |
| AspLEI | GCGC | 1 cut(s) | 23 |
| AsuHPI | GGTGA | 2 cut(s) | 305, 335 |
| BbvI | GCAGC | 3 cut(s) | 30, 156, 159 |
| BccI | CCATC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 1 cut(s) | 297 |
| BfmI | CTRYAG | 1 cut(s) | 337 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 68 |
| BglII | AGATCT | 1 cut(s) | 206 |
| BisI | GCNGC | 5 cut(s) | 19, 145, 148, 504, 507 |
| BlsI | GCNGC | 5 cut(s) | 20, 146, 149, 505, 508 |
| BmiI | GGNNCC | 2 cut(s) | 98, 398 |
| BmsI | GCATC | 1 cut(s) | 214 |
| BpuEI | CTTGAG | 1 cut(s) | 442 |
| BsaJI | CCNNGG | 1 cut(s) | 381 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 209, 259 |
| Bse1I | ACTGG | 2 cut(s) | 72, 398 |
| BseDI | CCNNGG | 1 cut(s) | 381 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 209, 259 |
| BseNI | ACTGG | 2 cut(s) | 72, 398 |
| BseRI | GAGGAG | 2 cut(s) | 154, 398 |
| BseXI | GCAGC | 3 cut(s) | 30, 156, 159 |
| BseYI | CCCAGC | 1 cut(s) | 83 |
| BsgI | GTGCAG | 1 cut(s) | 370 |
| BshFI | GGCC | 4 cut(s) | 31, 62, 121, 380 |
| BslFI | GGGAC | 1 cut(s) | 184 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 209, 259 |
| BsmAI | GTCTC | 1 cut(s) | 297 |
| BsmFI | GGGAC | 1 cut(s) | 184 |
| BsnI | GGCC | 4 cut(s) | 31, 62, 121, 380 |
| Bsp1407I | TGTACA | 1 cut(s) | 315 |
| Bsp143I | GATC | 1 cut(s) | 206 |
| BspACI | CCGC | 2 cut(s) | 214, 507 |
| BspANI | GGCC | 4 cut(s) | 31, 62, 121, 380 |
| BspLI | GGNNCC | 2 cut(s) | 98, 398 |
| BsrGI | TGTACA | 1 cut(s) | 315 |
| BsrI | ACTGG | 2 cut(s) | 72, 398 |
| BssECI | CCNNGG | 1 cut(s) | 381 |
| BssMI | GATC | 1 cut(s) | 206 |
| Bst4CI | ACNGT | 1 cut(s) | 499 |
| Bst6I | CTCTTC | 3 cut(s) | 193, 339, 409 |
| BstAUI | TGTACA | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 1 cut(s) | 460 |
| BstHHI | GCGC | 1 cut(s) | 23 |
| BstKTI | GATC | 1 cut(s) | 209 |
| BstMAI | GTCTC | 1 cut(s) | 297 |
| BstMBI | GATC | 1 cut(s) | 206 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstSFI | CTRYAG | 1 cut(s) | 337 |
| BstV1I | GCAGC | 3 cut(s) | 30, 156, 159 |
| BstX2I | RGATCY | 1 cut(s) | 206 |
| BstYI | RGATCY | 1 cut(s) | 206 |
| BsuRI | GGCC | 4 cut(s) | 31, 62, 121, 380 |
| BtsIMutI | CAGTG | 1 cut(s) | 65 |
| Cac8I | GCNNGC | 1 cut(s) | 460 |
| CfoI | GCGC | 1 cut(s) | 23 |
| Csp6I | GTAC | 1 cut(s) | 316 |
| CviAII | CATG | 3 cut(s) | 76, 313, 412 |
| CviQI | GTAC | 1 cut(s) | 316 |
| DpnI | GATC | 1 cut(s) | 208 |
| DpnII | GATC | 1 cut(s) | 206 |
| DraIII | CACNNNGTG | 1 cut(s) | 293 |
| Eam1104I | CTCTTC | 3 cut(s) | 193, 339, 409 |
| EarI | CTCTTC | 3 cut(s) | 193, 339, 409 |
| Eco147I | AGGCCT | 2 cut(s) | 31, 121 |
| Eco57I | CTGAAG | 1 cut(s) | 136 |
| FaeI | CATG | 3 cut(s) | 79, 316, 415 |
| FaiI | YATR | 7 cut(s) | 77, 125, 132, 170, 314, 413, 489 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 16, 48 |
| FaqI | GGGAC | 1 cut(s) | 184 |
| FatI | CATG | 3 cut(s) | 75, 312, 411 |
| Fnu4HI | GCNGC | 5 cut(s) | 19, 145, 148, 504, 507 |
| Fsp4HI | GCNGC | 5 cut(s) | 19, 145, 148, 504, 507 |
| GlaI | GCGC | 1 cut(s) | 22 |
| GluI | GCNGC | 5 cut(s) | 19, 145, 148, 504, 507 |
| GsaI | CCCAGC | 1 cut(s) | 87 |
| HaeIII | GGCC | 4 cut(s) | 31, 62, 121, 380 |
| HhaI | GCGC | 1 cut(s) | 23 |
| Hin1II | CATG | 3 cut(s) | 79, 316, 415 |
| Hin6I | GCGC | 1 cut(s) | 21 |
| HinP1I | GCGC | 1 cut(s) | 21 |
| HindIII | AAGCTT | 1 cut(s) | 264 |
| HinfI | GANTC | 1 cut(s) | 5 |
| HphI | GGTGA | 2 cut(s) | 305, 335 |
| Hpy188I | TCNGA | 1 cut(s) | 155 |
| HpyAV | CCTTC | 1 cut(s) | 21 |
| HpyCH4III | ACNGT | 1 cut(s) | 499 |
| HpyCH4V | TGCA | 4 cut(s) | 134, 279, 351, 503 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| Hsp92II | CATG | 3 cut(s) | 79, 316, 415 |
| HspAI | GCGC | 1 cut(s) | 21 |
| Kzo9I | GATC | 1 cut(s) | 206 |
| LmnI | GCTCC | 2 cut(s) | 96, 141 |
| Lsp1109I | GCAGC | 3 cut(s) | 30, 156, 159 |
| LweI | GCATC | 1 cut(s) | 214 |
| MaeIII | GTNAC | 1 cut(s) | 323 |
| MalI | GATC | 1 cut(s) | 208 |
| MboI | GATC | 1 cut(s) | 206 |
| MflI | RGATCY | 1 cut(s) | 206 |
| MnlI | CCTC | 9 cut(s) | 37, 73, 132, 170, 196, 314, 370, 376, 410 |
| MseI | TTAA | 1 cut(s) | 511 |
| MslI | CAYNNNNRTG | 1 cut(s) | 311 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NdeII | GATC | 1 cut(s) | 206 |
| NlaIII | CATG | 3 cut(s) | 79, 316, 415 |
| NlaIV | GGNNCC | 2 cut(s) | 98, 398 |
| NmeAIII | GCCGAG | 1 cut(s) | 406 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| PceI | AGGCCT | 2 cut(s) | 31, 121 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 209, 259 |
| PkrI | GCNGC | 5 cut(s) | 20, 146, 149, 505, 508 |
| PspFI | CCCAGC | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 2 cut(s) | 98, 398 |
| PsuI | RGATCY | 1 cut(s) | 206 |
| RsaI | GTAC | 1 cut(s) | 317 |
| RsaNI | GTAC | 1 cut(s) | 316 |
| RseI | CAYNNNNRTG | 1 cut(s) | 311 |
| SaqAI | TTAA | 1 cut(s) | 511 |
| SatI | GCNGC | 5 cut(s) | 19, 145, 148, 504, 507 |
| Sau3AI | GATC | 1 cut(s) | 206 |
| SetI | ASST | 6 cut(s) | 85, 152, 162, 268, 325, 402 |
| SfaNI | GCATC | 1 cut(s) | 214 |
| SfcI | CTRYAG | 1 cut(s) | 337 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 311 |
| SmlI | CTYRAG | 1 cut(s) | 421 |
| SmoI | CTYRAG | 1 cut(s) | 421 |
| SseBI | AGGCCT | 2 cut(s) | 31, 121 |
| SsiI | CCGC | 2 cut(s) | 214, 507 |
| StuI | AGGCCT | 2 cut(s) | 31, 121 |
| TaaI | ACNGT | 1 cut(s) | 499 |
| TaqI | TCGA | 1 cut(s) | 42 |
| TatI | WGTACW | 1 cut(s) | 315 |
| TauI | GCSGC | 1 cut(s) | 509 |
| Tru1I | TTAA | 1 cut(s) | 511 |
| Tru9I | TTAA | 1 cut(s) | 511 |
| TscAI | CASTG | 1 cut(s) | 72 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 4 cut(s) | 18, 144, 147, 503 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 3 cut(s) | 28, 301, 428 |
| TspRI | CASTG | 1 cut(s) | 72 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 209, 259 |