MD06G1043700.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016079
Physical Location & Seq
Forward (+)
5826378 .. 5827912
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1043700.v1.1.491

Sequence Viewer

Length: 519 bp
ATGGAATCAGTTTCCGGCGCTGTAAGGCGGCCTTGTTTCATCGACGAGGACGATGGGTTGGCCTCGCTGGCTGATATGGAAGCCGGGTTTTCCGGGTCCAACCACCCGTTTTATTCAAGGCCGATGTGTTTCGCGAGGCGGAGTGGCAGCTTCAGAAACGTTTCTCCCGCCATGGCTTCGTTTTCTTCGTCGTCTTCTTTTTCGCCGAGATCTGGGAGGTTCTGTGACGCCAGGTTTGAGGAGCACCACCAGCCCCATTTCTTGGATGCTTGTTTCCTCTGCAAGAAACCACTCGGTGATAACAGAGACATCTTCATGTACAGAGGTGACACTCCGTTCTGCAGTGAGGAGTGCAGAGATGAGCAGATAGAAATAGACGAGGCGAAGGAGAAGAACTGGAACCTCTCTTCCTCCATGAAAGCGCTGAGAAAAAGAGAGCAAAGGAAATCAAACAACTCAGCCAACACCGCCACCGCACAGGATTATCCTGTCCATACAGGCACAGTGGCAGCCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

173

Amino Acids

19.24

Weight (kDa)

6.21

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 80 - 129 4.8e-25 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016079)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17670
fragaria_vesca FvH4_5g20840
malus_domestica MD06G1043700.v1.1
prunus_persica Prupe.5G050400_v2.0.a1
pyrus_communis pycom06g03670
rosa_chinensis RchiOBHm_Chr7g0207851
rosa_laevigata RLG00000003282
rosa_multiflora Rmu_ssc0000451.1_g000011
rosa_roxburghii Rroxscaffold_3G00251100
rosa_rugosa Rorug07G0099800
rosa_samantha Rh7AG233100 Rh7BG228500 Rh7CG248100 Rh7DG239100
rosa_wichuraiana Rw7G020000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AccII CGCG 1 cut(s) 134
AciI CCGC 6 cut(s) 28, 139, 168, 468, 474, 513
AclI AACGTT 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 228
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 1 cut(s) 320
AfeI AGCGCT 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 212, 262
AgsI TTSAA 1 cut(s) 117
AjnI CCWGG 1 cut(s) 230
AloI GAACNNNNNNTCC 2 cut(s) 392, 424
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 300
Aor51HI AGCGCT 1 cut(s) 423
AoxI GGCC 3 cut(s) 29, 60, 119
ApeKI GCWGC 2 cut(s) 147, 509
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
Asp700I GAANNNNTTC 1 cut(s) 160
AspLEI GCGC 2 cut(s) 20, 424
AspS9I GGNCC 1 cut(s) 96
AsuC2I CCSGG 2 cut(s) 85, 94
AsuHPI GGTGA 2 cut(s) 308, 338
AvaII GGWCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 159
BccI CCATC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 232
BcnI CCSGG 2 cut(s) 85, 94
BcoDI GTCTC 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 340
BfoI RGCGCY 2 cut(s) 21, 425
BglI GCCNNNNNGGC 1 cut(s) 68
BglII AGATCT 1 cut(s) 209
BisI GCNGC 4 cut(s) 29, 148, 510, 513
BlsI GCNGC 4 cut(s) 30, 149, 511, 514
Bme1390I CCNGG 3 cut(s) 85, 94, 232
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 2 cut(s) 97, 401
BmrFI CCNGG 3 cut(s) 85, 94, 232
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 85, 94
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 262
Bse1I ACTGG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 212, 262
BseMII CTCAG 2 cut(s) 416, 471
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 2 cut(s) 254, 362
BseXI GCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 3 cut(s) 31, 62, 121
BsiHKAI GWGCWC 1 cut(s) 246
BsiSI CCGG 3 cut(s) 15, 84, 93
BslI CCNNNNNNNGG 2 cut(s) 212, 262
BsmAI GTCTC 1 cut(s) 300
BsnI GGCC 3 cut(s) 31, 62, 121
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 318
Bsp143I GATC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 171
Bsp68I TCGCGA 1 cut(s) 134
BspACI CCGC 6 cut(s) 28, 139, 168, 468, 474, 513
BspANI GGCC 3 cut(s) 31, 62, 121
BspCNI CTCAG 2 cut(s) 417, 470
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 97, 401
BspMAI CTGCAG 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 209
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 412
BstACI GRCGYC 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 3 cut(s) 425, 457, 516
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 2 cut(s) 21, 425
BstHHI GCGC 2 cut(s) 20, 424
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 3 cut(s) 68, 250, 467
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 83, 92, 230
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 3 cut(s) 31, 62, 121
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 349, 510
BtuMI TCGCGA 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 69
CfoI GCGC 2 cut(s) 20, 424
Cfr13I GGNCC 1 cut(s) 96
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 319
CviAII CATG 3 cut(s) 172, 316, 415
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 3 cut(s) 425, 457, 516
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
DraIII CACNNNGTG 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 412
EarI CTCTTC 1 cut(s) 412
EciI GGCGGA 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 96
Eco47III AGCGCT 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 3 cut(s) 175, 319, 418
FaiI YATR 5 cut(s) 77, 173, 317, 416, 495
FalI AAGNNNNNCTT 2 cut(s) 16, 48
FatI CATG 3 cut(s) 171, 315, 414
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 29, 148, 510, 513
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 4 cut(s) 29, 148, 510, 513
GlaI GCGC 2 cut(s) 19, 423
GluI GCNGC 4 cut(s) 29, 148, 510, 513
HaeII RGCGCY 2 cut(s) 21, 425
HaeIII GGCC 3 cut(s) 31, 62, 121
HapII CCGG 3 cut(s) 15, 84, 93
HgaI GACGC 1 cut(s) 236
HhaI GCGC 2 cut(s) 20, 424
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 175, 319, 418
Hin6I GCGC 2 cut(s) 18, 422
HinP1I GCGC 2 cut(s) 18, 422
HinfI GANTC 1 cut(s) 5
HpaII CCGG 3 cut(s) 15, 84, 93
HphI GGTGA 2 cut(s) 308, 338
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 133
Hpy99I CGWCG 2 cut(s) 47, 193
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 282, 342, 354
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 250, 467
HpyF3I CTNAG 3 cut(s) 425, 457, 516
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 175, 319, 418
HspAI GCGC 2 cut(s) 18, 422
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 224, 326
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 5 cut(s) 177, 186, 304, 399, 403
MflI RGATCY 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 160
MslI CAYNNNNRTG 1 cut(s) 314
MspI CCGG 3 cut(s) 15, 84, 93
MspR9I CCNGG 3 cut(s) 85, 94, 232
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 68, 250, 467
NciI CCSGG 2 cut(s) 85, 94
NcoI CCATGG 1 cut(s) 171
NdeII GATC 1 cut(s) 209
NlaIII CATG 3 cut(s) 175, 319, 418
NlaIV GGNNCC 2 cut(s) 97, 401
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 2 cut(s) 224, 326
NruI TCGCGA 1 cut(s) 134
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 185
PdmI GAANNNNTTC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 5
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 4 cut(s) 30, 149, 511, 514
Psp1406I AACGTT 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 97, 401
PspPI GGNCC 1 cut(s) 96
PstI CTGCAG 1 cut(s) 344
PsuI RGATCY 1 cut(s) 209
RruI TCGCGA 1 cut(s) 134
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 1 cut(s) 314
SatI GCNGC 4 cut(s) 29, 148, 510, 513
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 3 cut(s) 85, 94, 232
SduI GDGCHC 1 cut(s) 246
SetI ASST 6 cut(s) 152, 162, 221, 236, 328, 405
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 314
SsiI CCGC 6 cut(s) 28, 139, 168, 468, 474, 513
StyD4I CCNGG 3 cut(s) 83, 92, 230
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 42
TatI WGTACW 1 cut(s) 318
TauI GCSGC 2 cut(s) 31, 515
TfiI GAWTC 1 cut(s) 5
TscAI CASTG 2 cut(s) 349, 510
TseFI GTSAC 2 cut(s) 224, 326
TseI GCWGC 2 cut(s) 147, 509
Tsp45I GTSAC 2 cut(s) 224, 326
TspDTI ATGAA 3 cut(s) 28, 304, 431
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 2 cut(s) 349, 510
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.