AT4G17740

Carboxyl-terminal-processing peptidase 2

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9866977 .. 9869752
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17740.1

Sequence Viewer

Length: 1548 bp
ATGGAGGTCCTTGCGAGCTCTTCATTATCCCCAATTTCTTTTACTAAGCCTAACAAAATAAACCCTAATTTCTCAATCCAGGTGAAATTGTGGGTAAAACAACCTCCAAAGATTTCAAAAGCTAGCAAATTTAGTTATGCTCGTAGTCGTAGTAACATTTCAAGGAGCAATGCAGCAAACCCAGGAGTCGTGTTCGTCTGTAATAGATTTCTGTGTGTTATCGAAAGAAATGATCAGAGGAAATTATCTGGGAAGGTTATGATGAAATCTTCTGTTAATTTCAGACAGAATCTCTCTGTTGCATTAGTTCGGATCGTTTCTGTTCTGCTTGTCTCTTCCATTTCTGTTGTTACCACTGATTCACCACCATCATGGGGTCTTACTGAAGAGAATCTTCTCTTCCTCGAGGCTTGGAGAACAATTGATCGTGCTTATATTGATAAAACCTTTAATGGACAAAGCTGGTTTCGTTACAGAGAGACTGCTTTACGAAATGAGCCTATGAACACTCGAGAAGAGACATACATGGCTATCAAGAAAATGGTGGCAACACTAGATGATCCTTTTACTCGATTCTTGGAGCCCGGAAAGTTCAAGAGTTTGCGGTCGGGGACTCAAGGGGCGGTTACGGGTGTTGGGCTGTCGATAGGTTACCCCACTGCATCAGATGGACCACCAGCTGGGCTTGTTGTTATATCAGCTGCTCCAGGAGGTCCTGCAAATAGGGCGGGGATATTACCTGGCGATGTTATTCAAGGAATTGATAATACAACCACAGAAACTCTTACCATATACGATGCTGCACAGATGTTGCAGGGACCTGAAGGAAGTGCAGTGGAGCTAGCGATTCGCAGTGGACCTGAAACGAGACTCTTAACTTTGACGCGAGAGCGGGTTTCTGTGAATCCAGTGAAGTCAAGATTATGTGAACTTCCTGGTTCTGGGAGTAACTCCCCTAAGATTGGCTATATCAAGCTAACAACATTCAATCAAAATGCTTCTAGTGCGGTAAGGGAAGCTATTGAAACCTTGAGAGGCAACAATGTAAACGCATTCGTCTTGGACCTTCGAGACAATAGTGGAGGTTCTTTCCCAGAAGGAATTGAGATTGCTAAATTTTGGTTAGATAAAGGAGTGATTGTGTATATTTGCGATAGTCGAGGTGTTAGAGATATATATGATACTGATGGAAGCAATGCTATAGCAACCTCTGAGCCTCTTGCCGTTCTTGTTAACAAAGGCACCGCGAGTGCCAGCGAGATATTAGCAGGTGCCTTGAAAGATAATAAACGTGCTCTGGTTTATGGAGAACCAACTTACGGAAAAGGCAAGATACAGTCGGTTTTTGAGCTTTCTGATGGTTCGGGCTTGGCAGTAACAGTTGCTCGATATGAAACACCAGCTCACACAGATATAGACAAAGTCGGTGTAACTCCTGATCATCCATTGCCAAAGTCGTTTCCGAAAGATGAAGAGGCGTTCTGTGGATGCCTTAAGGATCCTACAGCTGCTTGTTATCTCAATCAAGGCCTACTTTTTTCTAGATGA

Protein Analysis

515

Amino Acids

55.76

Weight (kDa)

8.97

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 212 - 283 5.2e-08 PDZ domain
PDZ_6 PF17820 230 - 284 1.6e-11 PDZ domain
Peptidase_S41 PF03572 320 - 481 3.7e-53 Peptidase family S41
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1259
AbsI CCTCGAGG 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 1259
AccB1I GGYRCC 2 cut(s) 1241, 1271
AccB7I CCANNNNNTGG 1 cut(s) 680
AccBSI CCGCTC 1 cut(s) 892
AccII CGCG 2 cut(s) 886, 1247
AciI CCGC 6 cut(s) 604, 623, 728, 892, 1007, 1245
AclWI GGATC 4 cut(s) 320, 554, 1493, 1506
AcsI RAATTY 2 cut(s) 128, 1115
AcuI CTGAAG 2 cut(s) 405, 843
AfiI CCNNNNNNNGG 5 cut(s) 374, 680, 941, 962, 1319
AflII CTTAAG 1 cut(s) 1493
AgsI TTSAA 7 cut(s) 117, 162, 595, 755, 988, 1025, 1279
AjnI CCWGG 5 cut(s) 78, 181, 706, 739, 934
Alw21I GWGCWC 2 cut(s) 20, 1297
Alw26I GTCTC 5 cut(s) 337, 473, 512, 862, 1065
AlwI GGATC 4 cut(s) 320, 554, 1493, 1506
Ama87I CYCGRG 2 cut(s) 404, 510
AoxI GGCC 1 cut(s) 1528
ApeKI GCWGC 4 cut(s) 173, 701, 800, 1508
ApoI RAATTY 2 cut(s) 128, 1115
AspS9I GGNCC 6 cut(s) 7, 671, 713, 818, 857, 1063
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 2 cut(s) 94, 354
AsuNHI GCTAGC 2 cut(s) 122, 841
AvaI CYCGRG 2 cut(s) 404, 510
AvaII GGWCC 6 cut(s) 7, 671, 713, 818, 857, 1063
BamHI GGATCC 1 cut(s) 1498
BanI GGYRCC 2 cut(s) 1241, 1271
BanII GRGCYC 2 cut(s) 20, 585
Bbv12I GWGCWC 2 cut(s) 20, 1297
BbvI GCAGC 4 cut(s) 185, 688, 787, 1495
BccI CCATC 4 cut(s) 376, 662, 1181, 1352
BceAI ACGGC 1 cut(s) 1208
BciT130I CCWGG 5 cut(s) 80, 183, 708, 741, 936
BclI TGATCA 2 cut(s) 232, 1438
BcnI CCSGG 1 cut(s) 585
BcoDI GTCTC 5 cut(s) 337, 473, 512, 862, 1065
BfaI CTAG 5 cut(s) 123, 554, 842, 1002, 1542
BfmI CTRYAG 2 cut(s) 1200, 1503
BfrI CTTAAG 1 cut(s) 1493
BfuAI ACCTGC 1 cut(s) 1259
BisI GCNGC 4 cut(s) 174, 702, 801, 1509
BlsI GCNGC 4 cut(s) 175, 703, 802, 1510
Bme1390I CCNGG 6 cut(s) 80, 183, 585, 708, 741, 936
Bme18I GGWCC 6 cut(s) 7, 671, 713, 818, 857, 1063
BmeT110I CYCGRG 2 cut(s) 404, 510
BmgT120I GGNCC 6 cut(s) 7, 671, 713, 818, 857, 1063
BmiI GGNNCC 5 cut(s) 582, 819, 1243, 1273, 1500
BmrFI CCNGG 6 cut(s) 80, 183, 585, 708, 741, 936
BmsI GCATC 3 cut(s) 671, 787, 1478
BmtI GCTAGC 2 cut(s) 126, 845
BpmI CTGGAG 1 cut(s) 690
BpuEI CTTGAG 2 cut(s) 600, 1051
BpuMI CCSGG 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 1125, 1155
Bsc4I CCNNNNNNNGG 5 cut(s) 374, 680, 941, 962, 1319
Bse1I ACTGG 1 cut(s) 908
Bse3DI GCAATG 3 cut(s) 175, 1201, 1445
BseBI CCWGG 5 cut(s) 80, 183, 708, 741, 936
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 2 cut(s) 1441, 1493
BseLI CCNNNNNNNGG 5 cut(s) 374, 680, 941, 962, 1319
BseMI GCAATG 3 cut(s) 175, 1201, 1445
BseMII CTCAG 1 cut(s) 1203
BseNI ACTGG 1 cut(s) 908
BseXI GCAGC 4 cut(s) 185, 688, 787, 1495
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 2 cut(s) 786, 852
Bsh1236I CGCG 2 cut(s) 886, 1247
Bsh1285I CGRYCG 1 cut(s) 608
BshFI GGCC 1 cut(s) 1530
BshNI GGYRCC 2 cut(s) 1241, 1271
BsiEI CGRYCG 1 cut(s) 608
BsiHKAI GWGCWC 2 cut(s) 20, 1297
BsiHKCI CYCGRG 2 cut(s) 404, 510
BsiSI CCGG 1 cut(s) 585
BslFI GGGAC 2 cut(s) 625, 831
BslI CCNNNNNNNGG 5 cut(s) 374, 680, 941, 962, 1319
BsmAI GTCTC 5 cut(s) 337, 473, 512, 862, 1065
BsmFI GGGAC 2 cut(s) 625, 831
BsmI GAATGC 1 cut(s) 1052
BsnI GGCC 1 cut(s) 1530
BsoBI CYCGRG 2 cut(s) 404, 510
Bsp1286I GDGCHC 3 cut(s) 20, 585, 1297
Bsp143I GATC 6 cut(s) 232, 312, 424, 559, 1438, 1498
BspACI CCGC 6 cut(s) 604, 623, 728, 892, 1007, 1245
BspANI GGCC 1 cut(s) 1530
BspCNI CTCAG 1 cut(s) 1204
BspFNI CGCG 2 cut(s) 886, 1247
BspLI GGNNCC 5 cut(s) 582, 819, 1243, 1273, 1500
BspMI ACCTGC 1 cut(s) 1259
BspOI GCTAGC 2 cut(s) 126, 845
BspPI GGATC 4 cut(s) 320, 554, 1493, 1506
BspQI GCTCTTC 1 cut(s) 25
BspT107I GGYRCC 2 cut(s) 1241, 1271
BspTI CTTAAG 1 cut(s) 1493
BsrBI CCGCTC 1 cut(s) 892
BsrDI GCAATG 3 cut(s) 175, 1201, 1445
BsrI ACTGG 1 cut(s) 908
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 6 cut(s) 232, 312, 424, 559, 1438, 1498
Bst2UI CCWGG 5 cut(s) 80, 183, 708, 741, 936
Bst4CI ACNGT 2 cut(s) 1338, 1381
Bst6I CTCTTC 6 cut(s) 25, 340, 381, 404, 510, 1467
BstAFI CTTAAG 1 cut(s) 1493
BstC8I GCNNGC 4 cut(s) 16, 124, 843, 1255
BstDEI CTNAG 3 cut(s) 45, 957, 1212
BstEII GGTNACC 1 cut(s) 650
BstF5I GGATG 2 cut(s) 1441, 1493
BstFNI CGCG 2 cut(s) 886, 1247
BstKTI GATC 6 cut(s) 235, 315, 427, 562, 1441, 1501
BstMAI GTCTC 5 cut(s) 337, 473, 512, 862, 1065
BstMBI GATC 6 cut(s) 232, 312, 424, 559, 1438, 1498
BstMCI CGRYCG 1 cut(s) 608
BstMWI GCNNNNNNNGC 2 cut(s) 725, 1004
BstNI CCWGG 5 cut(s) 80, 183, 708, 741, 936
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 6 cut(s) 78, 181, 583, 706, 739, 934
BstSFI CTRYAG 2 cut(s) 1200, 1503
BstUI CGCG 2 cut(s) 886, 1247
BstV1I GCAGC 4 cut(s) 185, 688, 787, 1495
BstX2I RGATCY 1 cut(s) 1498
BstXI CCANNNNNNTGG 1 cut(s) 372
BstYI RGATCY 1 cut(s) 1498
BsuRI GGCC 1 cut(s) 1530
BtgZI GCGATG 1 cut(s) 759
BtsCI GGATG 2 cut(s) 1441, 1493
BtsI GCAGTG 3 cut(s) 657, 840, 859
BtsIMutI CAGTG 5 cut(s) 354, 657, 840, 859, 915
BveI ACCTGC 1 cut(s) 1259
Cac8I GCNNGC 4 cut(s) 16, 124, 843, 1255
Cfr13I GGNCC 6 cut(s) 7, 671, 713, 818, 857, 1063
CseI GACGC 1 cut(s) 892
CviAII CATG 2 cut(s) 372, 526
DdeI CTNAG 3 cut(s) 45, 957, 1212
DpnI GATC 6 cut(s) 234, 314, 426, 561, 1440, 1500
DpnII GATC 6 cut(s) 232, 312, 424, 559, 1438, 1498
Eam1104I CTCTTC 6 cut(s) 25, 340, 381, 404, 510, 1467
EarI CTCTTC 6 cut(s) 25, 340, 381, 404, 510, 1467
Ecl136II GAGCTC 1 cut(s) 18
Eco147I AGGCCT 1 cut(s) 1530
Eco24I GRGCYC 2 cut(s) 20, 585
Eco47I GGWCC 6 cut(s) 7, 671, 713, 818, 857, 1063
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 405, 843
Eco88I CYCGRG 2 cut(s) 404, 510
Eco91I GGTNACC 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 3 cut(s) 7, 713, 818
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 5 cut(s) 78, 181, 706, 739, 934
EcoT38I GRGCYC 2 cut(s) 20, 585
FaeI CATG 2 cut(s) 375, 529
FalI AAGNNNNNCTT 3 cut(s) 378, 410, 1518
FaqI GGGAC 2 cut(s) 625, 831
FatI CATG 2 cut(s) 371, 525
FauI CCCGC 2 cut(s) 721, 885
FbaI TGATCA 2 cut(s) 232, 1438
Fnu4HI GCNGC 4 cut(s) 174, 702, 801, 1509
FokI GGATG 2 cut(s) 1428, 1500
FriOI GRGCYC 2 cut(s) 20, 585
Fsp4HI GCNGC 4 cut(s) 174, 702, 801, 1509
FspBI CTAG 5 cut(s) 123, 554, 842, 1002, 1542
GluI GCNGC 4 cut(s) 174, 702, 801, 1509
GsaI CCCAGC 1 cut(s) 684
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 1 cut(s) 1530
HapII CCGG 1 cut(s) 585
HgaI GACGC 1 cut(s) 892
Hin1II CATG 2 cut(s) 375, 529
HincII GTYRAC 1 cut(s) 1234
HindII GTYRAC 1 cut(s) 1234
HinfI GANTC 9 cut(s) 186, 289, 359, 391, 573, 613, 847, 870, 904
HpaI GTTAAC 1 cut(s) 1234
HpaII CCGG 1 cut(s) 585
HphI GGTGA 2 cut(s) 94, 354
Hpy166II GTNNAC 4 cut(s) 857, 929, 1048, 1234
Hpy188I TCNGA 7 cut(s) 237, 284, 312, 667, 1213, 1357, 1464
Hpy188III TCNNGA 7 cut(s) 512, 535, 595, 918, 1070, 1436, 1542
Hpy8I GTNNAC 4 cut(s) 857, 929, 1048, 1234
HpyAV CCTTC 4 cut(s) 247, 818, 1076, 1091
HpyCH4III ACNGT 2 cut(s) 1338, 1381
HpyCH4IV ACGT 1 cut(s) 1291
HpyCH4V TGCA 7 cut(s) 173, 302, 662, 719, 803, 814, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 725, 1004
HpyF3I CTNAG 3 cut(s) 45, 957, 1212
HpySE526I ACGT 1 cut(s) 1291
Hsp92II CATG 2 cut(s) 375, 529
Ksp22I TGATCA 2 cut(s) 232, 1438
KspAI GTTAAC 1 cut(s) 1234
Kzo9I GATC 6 cut(s) 232, 312, 424, 559, 1438, 1498
LguI GCTCTTC 1 cut(s) 25
LmnI GCTCC 4 cut(s) 165, 580, 709, 838
Lsp1109I GCAGC 4 cut(s) 185, 688, 787, 1495
LweI GCATC 3 cut(s) 671, 787, 1478
MaeI CTAG 5 cut(s) 123, 554, 842, 1002, 1542
MaeII ACGT 1 cut(s) 1291
MaeIII GTNAC 8 cut(s) 152, 349, 470, 625, 650, 947, 1375, 1429
MalI GATC 6 cut(s) 234, 314, 426, 561, 1440, 1500
MbiI CCGCTC 1 cut(s) 892
MboI GATC 6 cut(s) 232, 312, 424, 559, 1438, 1498
MboII GAAGA 8 cut(s) 12, 261, 327, 386, 391, 398, 527, 1484
MfeI CAATTG 1 cut(s) 420
MflI RGATCY 1 cut(s) 1498
MhlI GDGCHC 3 cut(s) 20, 585, 1297
MlyI GAGTC 3 cut(s) 195, 607, 864
MseI TTAA 5 cut(s) 276, 450, 875, 1233, 1494
MslI CAYNNNNRTG 1 cut(s) 370
MspA1I CMGCKG 3 cut(s) 680, 701, 1508
MspCI CTTAAG 1 cut(s) 1493
MspI CCGG 1 cut(s) 585
MspR9I CCNGG 6 cut(s) 80, 183, 585, 708, 741, 936
MunI CAATTG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 5 cut(s) 80, 183, 708, 741, 936
MvnI CGCG 2 cut(s) 886, 1247
MwoI GCNNNNNNNGC 2 cut(s) 725, 1004
NciI CCSGG 1 cut(s) 585
NdeII GATC 6 cut(s) 232, 312, 424, 559, 1438, 1498
NheI GCTAGC 2 cut(s) 122, 841
NlaIII CATG 2 cut(s) 375, 529
NlaIV GGNNCC 5 cut(s) 582, 819, 1243, 1273, 1500
PaeR7I CTCGAG 2 cut(s) 404, 510
PaqCI CACCTGC 1 cut(s) 1259
PceI AGGCCT 1 cut(s) 1530
PciSI GCTCTTC 1 cut(s) 25
PctI GAATGC 1 cut(s) 1052
PfeI GAWTC 6 cut(s) 289, 359, 391, 573, 847, 904
PflFI GACNNNGTC 1 cut(s) 1421
PflMI CCANNNNNTGG 1 cut(s) 680
PfoI TCCNGGA 1 cut(s) 706
PkrI GCNGC 4 cut(s) 175, 703, 802, 1510
PleI GAGTC 3 cut(s) 194, 607, 864
PpsI GAGTC 3 cut(s) 194, 607, 864
PpuMI RGGWCCY 3 cut(s) 7, 713, 818
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 3 cut(s) 7, 713, 818
Psp6I CCWGG 5 cut(s) 78, 181, 706, 739, 934
PspEI GGTNACC 1 cut(s) 650
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 5 cut(s) 78, 181, 706, 739, 934
PspN4I GGNNCC 5 cut(s) 582, 819, 1243, 1273, 1500
PspPI GGNCC 6 cut(s) 7, 671, 713, 818, 857, 1063
PspPPI RGGWCCY 3 cut(s) 7, 713, 818
PspXI VCTCGAGB 1 cut(s) 404
PsuI RGATCY 1 cut(s) 1498
PsyI GACNNNGTC 1 cut(s) 1421
PvuII CAGCTG 3 cut(s) 680, 701, 1508
RseI CAYNNNNRTG 1 cut(s) 370
SacI GAGCTC 1 cut(s) 20
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 5 cut(s) 276, 450, 875, 1233, 1494
SatI GCNGC 4 cut(s) 174, 702, 801, 1509
Sau3AI GATC 6 cut(s) 232, 312, 424, 559, 1438, 1498
Sau96I GGNCC 6 cut(s) 7, 671, 713, 818, 857, 1063
SchI GAGTC 3 cut(s) 195, 607, 864
ScrFI CCNGG 6 cut(s) 80, 183, 585, 708, 741, 936
SduI GDGCHC 3 cut(s) 20, 585, 1297
SfaNI GCATC 3 cut(s) 671, 787, 1478
SfcI CTRYAG 2 cut(s) 1200, 1503
Sfr274I CTCGAG 2 cut(s) 404, 510
SinI GGWCC 6 cut(s) 7, 671, 713, 818, 857, 1063
SlaI CTCGAG 2 cut(s) 404, 510
SmiMI CAYNNNNRTG 1 cut(s) 370
SmlI CTYRAG 5 cut(s) 404, 510, 615, 1030, 1493
SmoI CTYRAG 5 cut(s) 404, 510, 615, 1030, 1493
SseBI AGGCCT 1 cut(s) 1530
SsiI CCGC 6 cut(s) 604, 623, 728, 892, 1007, 1245
SspMI CTAG 5 cut(s) 123, 554, 842, 1002, 1542
SstI GAGCTC 1 cut(s) 20
StuI AGGCCT 1 cut(s) 1530
StyD4I CCNGG 6 cut(s) 78, 181, 583, 706, 739, 934
TaaI ACNGT 2 cut(s) 1338, 1381
TaiI ACGT 1 cut(s) 1294
TaqI TCGA 8 cut(s) 222, 405, 511, 571, 644, 1069, 1159, 1387
TfiI GAWTC 6 cut(s) 289, 359, 391, 573, 847, 904
Tru1I TTAA 5 cut(s) 276, 450, 875, 1233, 1494
Tru9I TTAA 5 cut(s) 276, 450, 875, 1233, 1494
TscAI CASTG 5 cut(s) 361, 664, 840, 859, 915
TseI GCWGC 4 cut(s) 173, 701, 800, 1508
TspDTI ATGAA 5 cut(s) 12, 278, 518, 1407, 1485
TspGWI ACGGA 1 cut(s) 1335
TspRI CASTG 5 cut(s) 361, 664, 840, 859, 915
Tth111I GACNNNGTC 1 cut(s) 1421
Van91I CCANNNNNTGG 1 cut(s) 680
Vha464I CTTAAG 1 cut(s) 1493
VpaK11BI GGWCC 6 cut(s) 7, 671, 713, 818, 857, 1063
XapI RAATTY 2 cut(s) 128, 1115
XbaI TCTAGA 1 cut(s) 1541
XhoI CTCGAG 2 cut(s) 404, 510
XspI CTAG 5 cut(s) 123, 554, 842, 1002, 1542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.