MD16G1230600.v1.1

C-terminal processing peptidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
23631047 .. 23644235
13189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1230600.v1.1.491

Sequence Viewer

Length: 1197 bp
ATGGATGTCCTCGCTGGCTCTGCAACTGCTTCTTCTTCATACCCTCATTTACTAATCTCCAACTTCTACAAGAACCACTGTAGCTCCGCCTCCATGGCCGCCGCTCCTCCACCTCAGTTGCTGCAGTGGAAGTATCTGCCAGTAAGGATTGTAGAAGCTCGAGCGAAGTCTCCCTTAATGTGTATAATGACTATGTCGCTGAAGAGACCAATAAATTATGCAAATTATAGCAAGATCAAGAAAAAACTTCGATTGAAGAAATATGCTGGCAGTCTCCATGAAGTGATAAAATGTTCAGAAAAAATCAGACGACATATTTTTGTTTTTGTTGCTGGGCTGATGGTTGTCATGTCAGCTTCCCTTTCTGTTAGCAGTATTCCATCCTGGGCTCTCACAGAAGAGAATCTTCTCTTCTTAGAGGCATGGAAGATGATTGACCGTGCATATGTTGACAAAAGTTTCAATGGACAAAGTTGGTTTCGGTACAGAGAAAATGCACTGCGCAATGAACCGATGAATGCACGAGAAGAGACATATATGGCAATTAGGAAGATGCTTGCCACATTGGAGGATCCTTTCACTCGGTTTCTGGAGCCTGAAAAGTTAACGAGTCTACGGTCTGGAACTCGAGGTGCTCTTACAGGCGTAGGGCTGTCAATTGGCTACCCTACACAACTTGATGGATCAGCTGCTGGTCTTGTTGTTATCTCAGCTTCCGCAGGAGGTCCAGCAAACAGGGCTGGCATCTTGTCTGGGGATGTTATTCTGGCGATTGATGATACAAGTACAGAAACAATGGGCATATATGATGCAGCAGAGCGGCTACAGGGATCTGAAGGAAGTTCAGTGAAACTAACCATTCGGAGTGGACCTGAAATAAAGCACCTGGATCTAATGCGGGAGAAAGTTTCACTGAATCCTGTGAAGTCAAGACTATGTGCGGTGCCTGCTTCGGGAAAGGATTCCCCTAGGATTGGATATATCAAACTACCAACGTTCAATCAAAATGCATCTGGTGCTGTCAAGGAAGCAATTAATACCTTAAGGAGTAATAATGTTAATGCCTTTGTTGGTGATAGTCGTGGTGTTCGAGATATATATGACACCGATGGAAGCAAAGCAGTAGCGACTTCAGAACCCCTAGTTGTGCTGGTACATGTTTATTTAGTAATACGATTAAGTAGATTTGGTCAGTGA

Protein Analysis

399

Amino Acids

43.61

Weight (kDa)

9.59

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDZ PF00595 216 - 288 3.8e-09 PDZ domain
PDZ_2 PF13180 229 - 295 2.3e-06 PDZ domain
PDZ_6 PF17820 235 - 288 3.2e-12 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 943
AccBSI CCGCTC 2 cut(s) 104, 820
AccI GTMKAC 1 cut(s) 613
AciI CCGC 7 cut(s) 87, 99, 102, 717, 820, 898, 941
AclI AACGTT 1 cut(s) 995
AclWI GGATC 5 cut(s) 566, 579, 691, 838, 897
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 3 cut(s) 221, 855, 1116
AfaI GTAC 3 cut(s) 485, 787, 1155
AfiI CCNNNNNNNGG 2 cut(s) 953, 974
AflII CTTAAG 1 cut(s) 1042
AflIII ACRYGT 1 cut(s) 1156
AgsI TTSAA 3 cut(s) 256, 463, 1000
AjnI CCWGG 2 cut(s) 383, 885
AluBI AGCT 5 cut(s) 84, 158, 356, 689, 713
AluI AGCT 5 cut(s) 84, 158, 356, 689, 713
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 4 cut(s) 174, 199, 278, 524
AlwI GGATC 5 cut(s) 566, 579, 691, 838, 897
AlwNI CAGNNNCTG 2 cut(s) 121, 692
Ama87I CYCGRG 2 cut(s) 159, 627
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 3 cut(s) 121, 689, 812
AseI ATTAAT 1 cut(s) 1035
Asp700I GAANNNNTTC 1 cut(s) 961
AspA2I CCTAGG 1 cut(s) 968
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 725, 869
AsuHPI GGTGA 1 cut(s) 1085
AvaI CYCGRG 2 cut(s) 159, 627
AvaII GGWCC 2 cut(s) 725, 869
AvrII CCTAGG 1 cut(s) 968
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 943
BanII GRGCYC 1 cut(s) 391
BauI CACGAG 1 cut(s) 522
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 3 cut(s) 108, 676, 824
BccI CCATC 4 cut(s) 334, 388, 674, 1103
BciT130I CCWGG 2 cut(s) 385, 887
BcoDI GTCTC 4 cut(s) 174, 199, 278, 524
BfaI CTAG 2 cut(s) 969, 1142
BfmI CTRYAG 3 cut(s) 79, 122, 824
BfrI CTTAAG 1 cut(s) 1042
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 6 cut(s) 99, 102, 122, 690, 813, 821
BlnI CCTAGG 1 cut(s) 968
BlsI GCNGC 6 cut(s) 100, 103, 123, 691, 814, 822
Bme1390I CCNGG 2 cut(s) 385, 887
Bme18I GGWCC 2 cut(s) 725, 869
BmeT110I CYCGRG 2 cut(s) 159, 627
BmgT120I GGNCC 2 cut(s) 725, 869
BmiI GGNNCC 3 cut(s) 573, 594, 945
BmrFI CCNGG 2 cut(s) 385, 887
BmsI GCATC 4 cut(s) 543, 753, 799, 1019
BpmI CTGGAG 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 3 cut(s) 93, 384, 968
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 2 cut(s) 953, 974
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 511
BseBI CCWGG 2 cut(s) 385, 887
BseDI CCNNGG 3 cut(s) 93, 384, 968
BseGI GGATG 3 cut(s) 10, 380, 763
BseLI CCNNNNNNNGG 2 cut(s) 953, 974
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 2 cut(s) 128, 723
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 108, 676, 824
BseYI CCCAGC 1 cut(s) 332
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 943
BsiHKAI GWGCWC 1 cut(s) 637
BsiHKCI CYCGRG 2 cut(s) 159, 627
BslI CCNNNNNNNGG 2 cut(s) 953, 974
BsmAI GTCTC 4 cut(s) 174, 199, 278, 524
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 2 cut(s) 159, 627
Bsp1286I GDGCHC 2 cut(s) 391, 637
Bsp143I GATC 5 cut(s) 234, 571, 683, 830, 889
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 7 cut(s) 87, 99, 102, 717, 820, 898, 941
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 127, 722
BspLI GGNNCC 3 cut(s) 573, 594, 945
BspMAI CTGCAG 1 cut(s) 126
BspPI GGATC 5 cut(s) 566, 579, 691, 838, 897
BspT107I GGYRCC 1 cut(s) 943
BspTI CTTAAG 1 cut(s) 1042
BspTNI GGTCTC 1 cut(s) 199
BsrBI CCGCTC 2 cut(s) 104, 820
BsrDI GCAATG 1 cut(s) 511
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 93, 384, 968
BssMI GATC 5 cut(s) 234, 571, 683, 830, 889
BssSI CACGAG 1 cut(s) 522
BssT1I CCWWGG 2 cut(s) 93, 968
Bst2BI CACGAG 1 cut(s) 522
Bst2UI CCWGG 2 cut(s) 385, 887
Bst4CI ACNGT 3 cut(s) 80, 440, 618
Bst6I CTCTTC 4 cut(s) 197, 393, 416, 522
BstAFI CTTAAG 1 cut(s) 1042
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstC8I GCNNGC 5 cut(s) 16, 268, 558, 742, 948
BstDEI CTNAG 3 cut(s) 114, 415, 709
BstDSI CCRYGG 1 cut(s) 93
BstF5I GGATG 3 cut(s) 10, 380, 763
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 5 cut(s) 237, 574, 686, 833, 892
BstMAI GTCTC 4 cut(s) 174, 199, 278, 524
BstMBI GATC 5 cut(s) 234, 571, 683, 830, 889
BstMWI GCNNNNNNNGC 5 cut(s) 20, 95, 737, 947, 1016
BstNI CCWGG 2 cut(s) 385, 887
BstNSI RCATGY 1 cut(s) 1160
BstSCI CCNGG 2 cut(s) 383, 885
BstSFI CTRYAG 3 cut(s) 79, 122, 824
BstV1I GCAGC 3 cut(s) 108, 676, 824
BstX2I RGATCY 3 cut(s) 571, 830, 889
BstYI RGATCY 3 cut(s) 571, 830, 889
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 93
BtsCI GGATG 3 cut(s) 10, 380, 763
BtsI GCAGTG 2 cut(s) 131, 497
BtsIMutI CAGTG 5 cut(s) 76, 131, 497, 852, 911
Cac8I GCNNGC 5 cut(s) 16, 268, 558, 742, 948
CaiI CAGNNNCTG 2 cut(s) 121, 692
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 725, 869
Csp6I GTAC 3 cut(s) 484, 786, 1154
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 5 cut(s) 94, 278, 349, 423, 1157
CviQI GTAC 3 cut(s) 484, 786, 1154
DdeI CTNAG 3 cut(s) 114, 415, 709
DpnI GATC 5 cut(s) 236, 573, 685, 832, 891
DpnII GATC 5 cut(s) 234, 571, 683, 830, 889
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 4 cut(s) 197, 393, 416, 522
EarI CTCTTC 4 cut(s) 197, 393, 416, 522
EciI GGCGGA 1 cut(s) 76
Eco130I CCWWGG 2 cut(s) 93, 968
Eco24I GRGCYC 1 cut(s) 391
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 725, 869
Eco57I CTGAAG 3 cut(s) 221, 855, 1116
Eco88I CYCGRG 2 cut(s) 159, 627
EcoRII CCWGG 2 cut(s) 383, 885
EcoT14I CCWWGG 2 cut(s) 93, 968
EcoT22I ATGCAT 1 cut(s) 1012
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 93, 968
FaeI CATG 5 cut(s) 97, 281, 352, 426, 1160
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 390, 422
FatI CATG 5 cut(s) 93, 277, 348, 422, 1156
FauI CCCGC 1 cut(s) 891
FauNDI CATATG 1 cut(s) 445
FblI GTMKAC 1 cut(s) 613
Fnu4HI GCNGC 6 cut(s) 99, 102, 122, 690, 813, 821
FokI GGATG 3 cut(s) 17, 367, 770
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 6 cut(s) 99, 102, 122, 690, 813, 821
FspBI CTAG 2 cut(s) 969, 1142
FspI TGCGCA 1 cut(s) 503
GlaI GCGC 1 cut(s) 503
GluI GCNGC 6 cut(s) 99, 102, 122, 690, 813, 821
GsaI CCCAGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 1 cut(s) 98
HhaI GCGC 1 cut(s) 504
Hin1II CATG 5 cut(s) 97, 281, 352, 426, 1160
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HincII GTYRAC 2 cut(s) 451, 606
HindII GTYRAC 2 cut(s) 451, 606
HinfI GANTC 4 cut(s) 403, 610, 916, 962
HpaI GTTAAC 1 cut(s) 606
HphI GGTGA 1 cut(s) 1085
Hpy166II GTNNAC 4 cut(s) 451, 606, 614, 869
Hpy188I TCNGA 5 cut(s) 298, 308, 835, 864, 1135
Hpy188III TCNNGA 6 cut(s) 238, 590, 621, 930, 954, 1091
Hpy8I GTNNAC 4 cut(s) 451, 606, 614, 869
HpyAV CCTTC 1 cut(s) 830
HpyCH4III ACNGT 3 cut(s) 80, 440, 618
HpyCH4IV ACGT 1 cut(s) 995
HpyCH4V TGCA 8 cut(s) 23, 124, 221, 443, 497, 521, 812, 1010
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 95, 737, 947, 1016
HpyF3I CTNAG 3 cut(s) 114, 415, 709
HpySE526I ACGT 1 cut(s) 995
Hsp92II CATG 5 cut(s) 97, 281, 352, 426, 1160
HspAI GCGC 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 606
Kzo9I GATC 5 cut(s) 234, 571, 683, 830, 889
LmnI GCTCC 3 cut(s) 89, 109, 592
Lsp1109I GCAGC 3 cut(s) 108, 676, 824
LweI GCATC 4 cut(s) 543, 753, 799, 1019
MaeI CTAG 2 cut(s) 969, 1142
MaeII ACGT 1 cut(s) 995
MalI GATC 5 cut(s) 236, 573, 685, 832, 891
MbiI CCGCTC 2 cut(s) 104, 820
MboI GATC 5 cut(s) 234, 571, 683, 830, 889
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 3 cut(s) 571, 830, 889
MhlI GDGCHC 2 cut(s) 391, 637
MluCI AATT 5 cut(s) 214, 223, 543, 657, 1032
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 9 cut(s) 20, 54, 100, 117, 123, 412, 562, 623, 716
Mph1103I ATGCAT 1 cut(s) 1012
MroXI GAANNNNTTC 1 cut(s) 961
MseI TTAA 6 cut(s) 176, 605, 1035, 1043, 1059, 1178
MspA1I CMGCKG 1 cut(s) 689
MspCI CTTAAG 1 cut(s) 1042
MspR9I CCNGG 2 cut(s) 385, 887
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 2 cut(s) 385, 887
MwoI GCNNNNNNNGC 5 cut(s) 20, 95, 737, 947, 1016
NcoI CCATGG 1 cut(s) 93
NdeI CATATG 1 cut(s) 445
NdeII GATC 5 cut(s) 234, 571, 683, 830, 889
NlaIII CATG 5 cut(s) 97, 281, 352, 426, 1160
NlaIV GGNNCC 3 cut(s) 573, 594, 945
NsbI TGCGCA 1 cut(s) 503
NsiI ATGCAT 1 cut(s) 1012
NspI RCATGY 1 cut(s) 1160
PaeR7I CTCGAG 2 cut(s) 159, 627
PciI ACATGT 1 cut(s) 1156
PcsI WCGNNNNNNNCGW 1 cut(s) 1087
PctI GAATGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 961
PfeI GAWTC 3 cut(s) 403, 916, 962
PflFI GACNNNGTC 1 cut(s) 193
PkrI GCNGC 6 cut(s) 100, 103, 123, 691, 814, 822
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
PscI ACATGT 1 cut(s) 1156
PshBI ATTAAT 1 cut(s) 1035
Psp1406I AACGTT 1 cut(s) 995
Psp6I CCWGG 2 cut(s) 383, 885
PspFI CCCAGC 1 cut(s) 332
PspGI CCWGG 2 cut(s) 383, 885
PspN4I GGNNCC 3 cut(s) 573, 594, 945
PspPI GGNCC 2 cut(s) 725, 869
PspXI VCTCGAGB 2 cut(s) 159, 627
PstI CTGCAG 1 cut(s) 126
PstNI CAGNNNCTG 2 cut(s) 121, 692
PsuI RGATCY 3 cut(s) 571, 830, 889
PsyI GACNNNGTC 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 3 cut(s) 485, 787, 1155
RsaNI GTAC 3 cut(s) 484, 786, 1154
SaqAI TTAA 6 cut(s) 176, 605, 1035, 1043, 1059, 1178
SatI GCNGC 6 cut(s) 99, 102, 122, 690, 813, 821
Sau3AI GATC 5 cut(s) 234, 571, 683, 830, 889
Sau96I GGNCC 2 cut(s) 725, 869
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 2 cut(s) 385, 887
SduI GDGCHC 2 cut(s) 391, 637
SfaNI GCATC 4 cut(s) 543, 753, 799, 1019
SfcI CTRYAG 3 cut(s) 79, 122, 824
Sfr274I CTCGAG 2 cut(s) 159, 627
SinI GGWCC 2 cut(s) 725, 869
SlaI CTCGAG 2 cut(s) 159, 627
SmlI CTYRAG 3 cut(s) 159, 627, 1042
SmoI CTYRAG 3 cut(s) 159, 627, 1042
Sse9I AATT 5 cut(s) 214, 223, 543, 657, 1032
SsiI CCGC 7 cut(s) 87, 99, 102, 717, 820, 898, 941
SspMI CTAG 2 cut(s) 969, 1142
StyD4I CCNGG 2 cut(s) 383, 885
StyI CCWWGG 2 cut(s) 93, 968
TaaI ACNGT 3 cut(s) 80, 440, 618
TaiI ACGT 1 cut(s) 998
TaqI TCGA 4 cut(s) 160, 250, 628, 1090
TasI AATT 5 cut(s) 214, 223, 543, 657, 1032
TatI WGTACW 1 cut(s) 785
TauI GCSGC 3 cut(s) 101, 104, 823
TfiI GAWTC 3 cut(s) 403, 916, 962
Tru1I TTAA 6 cut(s) 176, 605, 1035, 1043, 1059, 1178
Tru9I TTAA 6 cut(s) 176, 605, 1035, 1043, 1059, 1178
TscAI CASTG 5 cut(s) 83, 131, 504, 852, 918
TseI GCWGC 3 cut(s) 121, 689, 812
TspDTI ATGAA 4 cut(s) 27, 294, 522, 530
TspRI CASTG 5 cut(s) 83, 131, 504, 852, 918
Tth111I GACNNNGTC 1 cut(s) 193
Vha464I CTTAAG 1 cut(s) 1042
VpaK11BI GGWCC 2 cut(s) 725, 869
VspI ATTAAT 1 cut(s) 1035
XceI RCATGY 1 cut(s) 1160
XhoI CTCGAG 2 cut(s) 159, 627
XmaJI CCTAGG 1 cut(s) 968
XmiI GTMKAC 1 cut(s) 613
XmnI GAANNNNTTC 1 cut(s) 961
XspI CTAG 2 cut(s) 969, 1142
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.