Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004074

Physical Location & Seq

Genomic Coordinates Forward (+)

43202953 .. 43208449

Gene Structure 5497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0352600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCTACTATCAGCAACTCAACAAATATATTTTGGCAAGAATGTCCTGTTGGGAAAGCTGAAAGGCAGAAACTACTCAACCAAAAGGGCTGTGTTGTATGGATTACAGGTCTCAGCGGATCAGGGAAAAGTACACTGGCGTGCTCACTAAGTAGAGAACTGCACTCGAGGGGAAAGCTGTCATATATCCTTGATGGTGATAACCTTCGACATGGTATCAACAAGGATCTTGGTTTCAAACCAGAAGACCGGACTGAAAATATTCGCAGAGTTGGGGAGATCGCAAAACTGTTTGCGGATGCAGGATTGATCTGTATTGCTAGTCTGATATCTCCTTATAGGAAAGATCGTGATGCTTGCCGTGCAATGCTACCAGATGCAAATTTTATTGAGGTTTTCATGAACATGCCCCTAGAGTTATGTGAGTCAAGGGATGCAAAAGGTCTTTACAAGCTTGCACGTGCGGGAAAGATTAGAGGTTTTACCGGAATTGATGATCCATATGAACAACCACTGAACTGTGAGATAGAAATACAGCAAAATAATGGAGTTTGTCCCCTGCCTGCAGCCCTGGCAGGCCAGGTAGTGACATACTTGGAGGAGAAAGGCTTTCTTCAAGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009579 GO:0016787 GO:0019538 GO:0031977 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

208

Amino Acids

23.04

Weight (kDa)

6.74

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APS_kinase	PF01583	29 - 178	1.4e-68	Adenylylsulphate kinase
AAA_33	PF13671	32 - 147	5.4e-08	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17740 AT4G17740
fragaria_vesca	FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180
malus_domestica	MD13G1225700.v1.1 MD16G1230600.v1.1
prunus_persica	Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1
pyrus_communis	pycom13g19890 pycom16g19260
rosa_chinensis	RchiOBHm_Chr4g0396091
rosa_laevigata	RLG00000009573
rosa_multiflora	Rmu_sc0006325.1_g000018 Rmu_sc0007010.1_g000014 Rmu_sc0009634.1_g000011
rosa_roxburghii	Rroxscaffold_5G00340890
rosa_rugosa	Rorug03G0352600 Rorug03G0352600
rosa_samantha	Rh4BG064100 Rh4CG070700 Rh4DG061100
rosa_wichuraiana	Rw4G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	117, 296, 464
AclWI	GGATC	3 cut(s)	127, 234, 491
AcsI	RAATTY	1 cut(s)	382
AcvI	CACGTG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	238, 617
AjnI	CCWGG	2 cut(s)	570, 579
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AleI	CACNNNNGTG	1 cut(s)	139
AluBI	AGCT	3 cut(s)	59, 178, 454
AluI	AGCT	3 cut(s)	59, 178, 454
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	3 cut(s)	127, 234, 491
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	1 cut(s)	577
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	166
BbrPI	CACGTG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	345
BciT130I	CCWGG	2 cut(s)	572, 581
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	2 cut(s)	321, 413
BfmI	CTRYAG	1 cut(s)	564
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	2 cut(s)	572, 581
BmeT110I	CYCGRG	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	572, 581
BmsI	GCATC	4 cut(s)	289, 343, 367, 424
BpiI	GAAGAC	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	2 cut(s)	249, 485
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	572, 581
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	2 cut(s)	304, 439
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	127
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	578
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	579
BsiHKAI	GWGCWC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	250, 486
BslFI	GGGAC	1 cut(s)	540
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	540
BsnI	GGCC	1 cut(s)	579
Bso31I	GGTCTC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	6 cut(s)	119, 226, 279, 309, 346, 496
BspACI	CCGC	3 cut(s)	117, 296, 464
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	568
BspPI	GGATC	3 cut(s)	127, 234, 491
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	6 cut(s)	119, 226, 279, 309, 346, 496
Bst2UI	CCWGG	2 cut(s)	572, 581
Bst4CI	ACNGT	2 cut(s)	291, 521
BstBAI	YACGTR	1 cut(s)	461
BstC8I	GCNNGC	5 cut(s)	142, 358, 456, 564, 577
BstDEI	CTNAG	2 cut(s)	113, 149
BstF5I	GGATG	2 cut(s)	304, 439
BstKTI	GATC	6 cut(s)	122, 229, 282, 312, 349, 499
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	6 cut(s)	119, 226, 279, 309, 346, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 572
BstNI	CCWGG	2 cut(s)	572, 581
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	570, 579
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	1 cut(s)	578
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	304, 439
BtsIMutI	CAGTG	2 cut(s)	134, 512
Cac8I	GCNNGC	5 cut(s)	142, 358, 456, 564, 577
CciI	TCATGA	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	3 cut(s)	212, 400, 406
CviJI	RGCY	7 cut(s)	59, 90, 178, 454, 569, 579, 609
CviKI_1	RGCY	7 cut(s)	59, 90, 178, 454, 569, 579, 609
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	2 cut(s)	113, 149
DpnI	GATC	6 cut(s)	121, 228, 281, 311, 348, 498
DpnII	GATC	6 cut(s)	119, 226, 279, 309, 346, 496
Eco31I	GGTCTC	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	330
Eco72I	CACGTG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	570, 579
EcoRV	GATATC	1 cut(s)	330
FaeI	CATG	3 cut(s)	215, 403, 409
FalI	AAGNNNNNCTT	1 cut(s)	597
FaqI	GGGAC	1 cut(s)	540
FatI	CATG	3 cut(s)	211, 399, 405
FauI	CCCGC	1 cut(s)	457
FauNDI	CATATG	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	2 cut(s)	311, 446
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	2 cut(s)	321, 413
GluI	GCNGC	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	579
HapII	CCGG	2 cut(s)	250, 486
Hin1II	CATG	3 cut(s)	215, 403, 409
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	2 cut(s)	250, 486
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	6, 134
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	2 cut(s)	350, 400
Hpy8I	GTNNAC	2 cut(s)	6, 134
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	2 cut(s)	291, 521
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	7 cut(s)	163, 302, 365, 380, 437, 458, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 572
HpyF3I	CTNAG	2 cut(s)	113, 149
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	215, 403, 409
Kzo9I	GATC	6 cut(s)	119, 226, 279, 309, 346, 496
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	4 cut(s)	289, 343, 367, 424
MaeI	CTAG	2 cut(s)	321, 413
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	6 cut(s)	121, 228, 281, 311, 348, 498
MboI	GATC	6 cut(s)	119, 226, 279, 309, 346, 496
MboII	GAAGA	2 cut(s)	257, 605
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	2 cut(s)	382, 489
MlyI	GAGTC	1 cut(s)	434
MnlI	CCTC	4 cut(s)	162, 385, 470, 592
MroXI	GAANNNNTTC	1 cut(s)	261
MslI	CAYNNNNRTG	2 cut(s)	139, 404
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	250, 486
MspR9I	CCNGG	2 cut(s)	572, 581
MvaI	CCWGG	2 cut(s)	572, 581
MwoI	GCNNNNNNNGC	2 cut(s)	362, 572
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	6 cut(s)	119, 226, 279, 309, 346, 496
NlaIII	CATG	3 cut(s)	215, 403, 409
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	409
OliI	CACNNNNGTG	1 cut(s)	139
PaeR7I	CTCGAG	1 cut(s)	166
PagI	TCATGA	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	1 cut(s)	433
PmaCI	CACGTG	1 cut(s)	461
PmlI	CACGTG	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	570, 579
PspCI	CACGTG	1 cut(s)	461
PspGI	CCWGG	2 cut(s)	570, 579
PspXI	VCTCGAGB	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	2 cut(s)	139, 404
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	6 cut(s)	119, 226, 279, 309, 346, 496
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	572, 581
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	4 cut(s)	289, 343, 367, 424
SfcI	CTRYAG	1 cut(s)	564
Sfr274I	CTCGAG	1 cut(s)	166
SlaI	CTCGAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	139, 404
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	382, 489
SsiI	CCGC	3 cut(s)	117, 296, 464
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	2 cut(s)	321, 413
StyD4I	CCNGG	2 cut(s)	570, 579
TaaI	ACNGT	2 cut(s)	291, 521
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	167, 208
TasI	AATT	2 cut(s)	382, 489
TatI	WGTACW	1 cut(s)	131
TscAI	CASTG	2 cut(s)	141, 519
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	3 cut(s)	388, 416, 519
TspRI	CASTG	2 cut(s)	141, 519
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	2 cut(s)	321, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.