Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007010.1

Orthogroup ID

OG0004074

Physical Location & Seq

Genomic Coordinates Reverse (-)

61271 .. 64562

Gene Structure 3292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007010.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atggtgtatttgcaatcagatatggcaataaaaaagatgcttgccacattggaagatcctttcactcgatttctggagccggaaaagttcaagagtctacggtcaggtactcaaggcgctcttacaggcgtagggctgtcaattggctaccctacaaaaattgatggatcatcagctggtctagttgttatttcagctgctccaggaggtccagcaaacagagctggcatcttgtctggggatgtcattttggcaattgatgatacaagtactgaaacgatgggcatatatgatgcagcagagcggttacagggatctgaaggaagttcggtgaaactaactgttcttagtggacctgaaatcaagcacttggatttaatgcgggagaaagtctcgctgaatccggtgaagtcaagattatgtgtagtgccgcattcaggcaaggattctcctaggattggctatatcaatctaacaacgttcaatcgaaatgcatcaggtgctgtgaaggaggcaattaaaactttaagggataataatgttaatgcctttgtgttggaccttcgagataatagtggtggtcttttcccagaaggaattgagattgccaagatttggctggacaaaggcgtgattgtatatatttgtgatagtcgtggtgttcgagatatatatgacactgatggaagccaagcagtagccactaaagaacccctagctgtgctggtgaacaagggtactgctagtgcaagtgaaatattagccggggcattgaaagacaataaacgtgctgtgttgtttggagaacctacatttgggaaagggaagattcagtcagtttttgagctgtctgatggttctggcttggctgttactgttgctcgttatgagacacctgctcacacagacatagacaaggttggtgtgattccagaccatccattgccaacctcatttccgaatgacgaggagggtttctgtaagtgcctccaggaccctgcctctgcttgcaacaaggtggaactatttgcaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009579 GO:0016787 GO:0019538 GO:0031977 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

345

Amino Acids

36.71

Weight (kDa)

5.55

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17740 AT4G17740
fragaria_vesca	FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180
malus_domestica	MD13G1225700.v1.1 MD16G1230600.v1.1
prunus_persica	Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1
pyrus_communis	pycom13g19890 pycom16g19260
rosa_chinensis	RchiOBHm_Chr4g0396091
rosa_laevigata	RLG00000009573
rosa_multiflora	Rmu_sc0006325.1_g000018 Rmu_sc0007010.1_g000014 Rmu_sc0009634.1_g000011
rosa_roxburghii	Rroxscaffold_5G00340890
rosa_rugosa	Rorug03G0352600 Rorug03G0352600
rosa_samantha	Rh4BG064100 Rh4CG070700 Rh4DG061100
rosa_wichuraiana	Rw4G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	904
Acc36I	ACCTGC	1 cut(s)	904
AccB7I	CCANNNNNTGG	1 cut(s)	615
AccBSI	CCGCTC	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	97
AciI	CCGC	3 cut(s)	304, 382, 431
AclI	AACGTT	1 cut(s)	479
AclWI	GGATC	3 cut(s)	50, 175, 322
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	109, 271, 739
AfiI	CCNNNNNNNGG	4 cut(s)	437, 458, 615, 815
AgsI	TTSAA	3 cut(s)	91, 484, 775
AjnI	CCWGG	2 cut(s)	202, 990
AjuI	GAANNNNNNNTTGG	2 cut(s)	798, 830
AluBI	AGCT	5 cut(s)	176, 197, 224, 719, 847
AluI	AGCT	5 cut(s)	176, 197, 224, 719, 847
Alw26I	GTCTC	2 cut(s)	397, 884
AlwI	GGATC	3 cut(s)	50, 175, 322
AlwNI	CAGNNNCTG	1 cut(s)	503
ApeKI	GCWGC	2 cut(s)	197, 296
AspA2I	CCTAGG	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	4 cut(s)	209, 353, 559, 994
AsuC2I	CCSGG	1 cut(s)	766
AsuHPI	GGTGA	3 cut(s)	343, 418, 739
AvaII	GGWCC	4 cut(s)	209, 353, 559, 994
AvrII	CCTAGG	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	184, 308
BccI	CCATC	5 cut(s)	158, 274, 677, 848, 945
BciT130I	CCWGG	2 cut(s)	204, 992
BcnI	CCSGG	1 cut(s)	766
BcoDI	GTCTC	2 cut(s)	397, 884
BfaI	CTAG	4 cut(s)	182, 453, 716, 744
BfoI	RGCGCY	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	904
BisI	GCNGC	3 cut(s)	198, 297, 431
BlnI	CCTAGG	1 cut(s)	452
BlsI	GCNGC	3 cut(s)	199, 298, 432
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	3 cut(s)	204, 766, 992
Bme18I	GGWCC	4 cut(s)	209, 353, 559, 994
BmgT120I	GGNCC	4 cut(s)	209, 353, 559, 994
BmiI	GGNNCC	2 cut(s)	78, 996
BmrFI	CCNGG	3 cut(s)	204, 766, 992
BmsI	GCATC	4 cut(s)	27, 237, 283, 503
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	3 cut(s)	95, 186, 974
BpuEI	CTTGAG	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	766
BsaJI	CCNNGG	2 cut(s)	452, 765
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	4 cut(s)	437, 458, 615, 815
Bse3DI	GCAATG	1 cut(s)	941
BseBI	CCWGG	2 cut(s)	204, 992
BseDI	CCNNGG	2 cut(s)	452, 765
BseGI	GGATG	2 cut(s)	247, 937
BseLI	CCNNNNNNNGG	4 cut(s)	437, 458, 615, 815
BseMI	GCAATG	1 cut(s)	941
BseRI	GAGGAG	1 cut(s)	983
BseXI	GCAGC	2 cut(s)	184, 308
BsiSI	CCGG	3 cut(s)	80, 404, 765
BslI	CCNNNNNNNGG	4 cut(s)	437, 458, 615, 815
BsmAI	GTCTC	2 cut(s)	397, 884
BsmI	GAATGC	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	55, 167, 314
BspACI	CCGC	3 cut(s)	304, 382, 431
BspLI	GGNNCC	2 cut(s)	78, 996
BspMI	ACCTGC	1 cut(s)	904
BspPI	GGATC	3 cut(s)	50, 175, 322
BsrBI	CCGCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	941
BssECI	CCNNGG	2 cut(s)	452, 765
BssMI	GATC	3 cut(s)	55, 167, 314
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	204, 992
Bst4CI	ACNGT	3 cut(s)	102, 343, 877
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	42, 226, 1009
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	247, 937
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	3 cut(s)	58, 170, 317
BstMAI	GTCTC	2 cut(s)	397, 884
BstMBI	GATC	3 cut(s)	55, 167, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 500
BstNI	CCWGG	2 cut(s)	204, 992
BstSCI	CCNGG	3 cut(s)	202, 764, 990
BstV1I	GCAGC	2 cut(s)	184, 308
BstX2I	RGATCY	2 cut(s)	55, 314
BstYI	RGATCY	2 cut(s)	55, 314
BtsCI	GGATG	2 cut(s)	247, 937
BtsIMutI	CAGTG	1 cut(s)	678
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	3 cut(s)	42, 226, 1009
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	4 cut(s)	209, 353, 559, 994
Csp6I	GTAC	3 cut(s)	108, 270, 738
CviQI	GTAC	3 cut(s)	108, 270, 738
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	3 cut(s)	57, 169, 316
DpnII	GATC	3 cut(s)	55, 167, 314
Eco130I	CCWWGG	1 cut(s)	452
Eco47I	GGWCC	4 cut(s)	209, 353, 559, 994
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	994
EcoRII	CCWGG	2 cut(s)	202, 990
EcoT14I	CCWWGG	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	452
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FauI	CCCGC	1 cut(s)	375
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	198, 297, 431
FokI	GGATG	2 cut(s)	254, 924
Fsp4HI	GCNGC	3 cut(s)	198, 297, 431
FspBI	CTAG	4 cut(s)	182, 453, 716, 744
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	3 cut(s)	198, 297, 431
GsuI	CTGGAG	3 cut(s)	95, 186, 974
HaeII	RGCGCY	1 cut(s)	120
HapII	CCGG	3 cut(s)	80, 404, 765
HhaI	GCGC	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	5 cut(s)	94, 400, 446, 829, 928
HpaII	CCGG	3 cut(s)	80, 404, 765
HphI	GGTGA	3 cut(s)	343, 418, 739
Hpy166II	GTNNAC	3 cut(s)	98, 353, 730
Hpy188I	TCNGA	4 cut(s)	19, 319, 853, 960
Hpy188III	TCNNGA	6 cut(s)	74, 91, 414, 566, 665, 932
Hpy8I	GTNNAC	3 cut(s)	98, 353, 730
HpyAV	CCTTC	4 cut(s)	314, 502, 572, 587
HpyCH4III	ACNGT	3 cut(s)	102, 343, 877
HpyCH4IV	ACGT	2 cut(s)	479, 787
HpyCH4V	TGCA	6 cut(s)	13, 296, 494, 749, 1011, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 500
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	2 cut(s)	479, 787
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	55, 167, 314
LmnI	GCTCC	2 cut(s)	76, 205
Lsp1109I	GCAGC	2 cut(s)	184, 308
LweI	GCATC	4 cut(s)	27, 237, 283, 503
MaeI	CTAG	4 cut(s)	182, 453, 716, 744
MaeII	ACGT	2 cut(s)	479, 787
MaeIII	GTNAC	2 cut(s)	306, 871
MalI	GATC	3 cut(s)	57, 169, 316
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	3 cut(s)	55, 167, 314
MboII	GAAGA	2 cut(s)	65, 838
MfeI	CAATTG	2 cut(s)	141, 255
MflI	RGATCY	2 cut(s)	55, 314
MluCI	AATT	5 cut(s)	141, 159, 255, 516, 597
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	7 cut(s)	200, 505, 961, 961, 964, 998, 1012
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	4 cut(s)	377, 519, 527, 543
MspA1I	CMGCKG	2 cut(s)	176, 197
MspI	CCGG	3 cut(s)	80, 404, 765
MspR9I	CCNGG	3 cut(s)	204, 766, 992
MunI	CAATTG	2 cut(s)	141, 255
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	204, 992
MwoI	GCNNNNNNNGC	2 cut(s)	221, 500
NciI	CCSGG	1 cut(s)	766
NdeII	GATC	3 cut(s)	55, 167, 314
NlaIV	GGNNCC	2 cut(s)	78, 996
NsiI	ATGCAT	1 cut(s)	496
PaqCI	CACCTGC	1 cut(s)	904
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	400, 446, 829, 928
PflMI	CCANNNNNTGG	1 cut(s)	615
PfoI	TCCNGGA	2 cut(s)	202, 990
PkrI	GCNGC	3 cut(s)	199, 298, 432
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PpuMI	RGGWCCY	1 cut(s)	994
Psp1406I	AACGTT	1 cut(s)	479
Psp5II	RGGWCCY	1 cut(s)	994
Psp6I	CCWGG	2 cut(s)	202, 990
PspGI	CCWGG	2 cut(s)	202, 990
PspN4I	GGNNCC	2 cut(s)	78, 996
PspPI	GGNCC	4 cut(s)	209, 353, 559, 994
PspPPI	RGGWCCY	1 cut(s)	994
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	2 cut(s)	55, 314
PvuII	CAGCTG	2 cut(s)	176, 197
RsaI	GTAC	3 cut(s)	109, 271, 739
RsaNI	GTAC	3 cut(s)	108, 270, 738
SaqAI	TTAA	4 cut(s)	377, 519, 527, 543
SatI	GCNGC	3 cut(s)	198, 297, 431
Sau3AI	GATC	3 cut(s)	55, 167, 314
Sau96I	GGNCC	4 cut(s)	209, 353, 559, 994
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	3 cut(s)	204, 766, 992
SfaNI	GCATC	4 cut(s)	27, 237, 283, 503
SinI	GGWCC	4 cut(s)	209, 353, 559, 994
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	5 cut(s)	141, 159, 255, 516, 597
SsiI	CCGC	3 cut(s)	304, 382, 431
SspI	AATATT	1 cut(s)	759
SspMI	CTAG	4 cut(s)	182, 453, 716, 744
StyD4I	CCNGG	3 cut(s)	202, 764, 990
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	3 cut(s)	102, 343, 877
TaiI	ACGT	2 cut(s)	482, 790
TaqI	TCGA	4 cut(s)	67, 487, 565, 664
TasI	AATT	5 cut(s)	141, 159, 255, 516, 597
TatI	WGTACW	1 cut(s)	269
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	4 cut(s)	400, 446, 829, 928
Tru1I	TTAA	4 cut(s)	377, 519, 527, 543
Tru9I	TTAA	4 cut(s)	377, 519, 527, 543
TscAI	CASTG	1 cut(s)	685
TseI	GCWGC	2 cut(s)	197, 296
TspRI	CASTG	1 cut(s)	685
Van91I	CCANNNNNTGG	1 cut(s)	615
VpaK11BI	GGWCC	4 cut(s)	209, 353, 559, 994
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XmaJI	CCTAGG	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	97
XspI	CTAG	4 cut(s)	182, 453, 716, 744
ZrmI	AGTACT	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.