Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004074

Physical Location & Seq

Genomic Coordinates Forward (+)

13065388 .. 13073212

Gene Structure 7825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG070700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAGGTCTTCGCTACCTCTGCAACTCCTTCTTCCTGCCCTCATTTCCTCATTTCAAATTTTCACAGTAACCCCAAATCTCCCTCTATCAAAACCACTCCTCAGGTGTTGAAATGGAAATGTCTGCCACTAGGGGTTGTAGAAGCTCGAGCAAAGTTTTCTTTAATGTGTGCAAGGACGAGATCCATCAAGAGACCGATAAGTTATGGTGGTGCTGATGGGTCCTCGAAACAAGATTTATTGCTTGGACCAATACGGAGGTTCAACCGAAATTTTGTTTCTCAGTTTGGTTTGTTTTCCGCGAGTTATAGTAAGCTCAAGGAAAAGCTTAAGTTGAGGAGACGTGCCGGGAGTCTTTATAAAGTGATAAACTGTCCTGAAAAATTTAGGCAGCATGTTTTTGTTCGATTTGTTGTTGGAGTGATGGTTGTCATGTCAGTTTCTGTTTCAGTTAGCAAGGTTCCATCATGGGCTCTTACTGAAGAGAATCTTCTCTTCTTAGAGGCGTGGAGGATGATTGACCGTGCATATGTTGATAAAAGTTTCAATGGACAAAGTTGGTTTCGGTACAGAGAGAATGCACTGCGCAGTGAACCAATGAACAACCGAGAAGAGACATATATGGCAATAAAAAAGATGCTTGCCACATTGGAAGATCCTTTCACTCGATTTCTGGAGCCGGAAAAGTTCAAGAGTCTACGGTCAGGTACTCAAGGCGCTCTTACAGGCGTAGGGCTGTCAATTGGCTACCCTACAAAAATTGATGGATCATCAGCTGGTCTAGTTGTTATTTCAGCTGCTCCAGGAGGTCCAGCAAACAGAGCTGGCATCTTGTCTGGGGATGTCATTTTGGCAATTGATGATACAAGTACTGAAACGATGGGCATATATGATGCAGCAGAGCGGTTACAGGGATCTGAAGGAAGTTCGGTGAAACTAACTGTTCTTAGTGGACCTGAAATCAAGCACTTGGATTTAATGCGGGAGAAAGTCTCGCTGAATCCGGTGAAGTCAAGATTATGTGTAGTGCCGCATTCAGGCAAGGATTCTCCTAGGATTGGCTATATCAAGCTAACAACGTTCAATCAAAATGCATCAGGTGCTGTGAAGGAGGCAATTAAAACTTTAAGGGATAATAATGTTAATGCCTTTGTGTTGGACCTTCGAGATAATAGTGGTGGTCTTTTCCCAGAAGGAATTGAGATTGCCAAGATTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009579 GO:0016787 GO:0019538 GO:0031977 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ PDZ_2 Peptidase_S41

Protein Analysis

406

Amino Acids

44.84

Weight (kDa)

9.75

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDZ	PF00595	252 - 316	3.1e-09	PDZ domain
PDZ_2	PF13180	258 - 324	4.4e-07	PDZ domain
PDZ_6	PF17820	262 - 315	1.6e-12	PDZ domain
Peptidase_S41	PF03572	352 - 406	2.9e-13	Peptidase family S41

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004074)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17740 AT4G17740
fragaria_vesca	FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180 FvH4_4g05180
malus_domestica	MD13G1225700.v1.1 MD16G1230600.v1.1
prunus_persica	Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1 Prupe.1G052500_v2.0.a1
pyrus_communis	pycom13g19890 pycom16g19260
rosa_chinensis	RchiOBHm_Chr4g0396091
rosa_laevigata	RLG00000009573
rosa_multiflora	Rmu_sc0006325.1_g000018 Rmu_sc0007010.1_g000014 Rmu_sc0009634.1_g000011
rosa_roxburghii	Rroxscaffold_5G00340890
rosa_rugosa	Rorug03G0352600 Rorug03G0352600
rosa_samantha	Rh4BG064100 Rh4CG070700 Rh4DG061100
rosa_wichuraiana	Rw4G005320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
Acc16I	TGCGCA	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	1215
AccBSI	CCGCTC	1 cut(s)	904
AccI	GTMKAC	1 cut(s)	697
AccII	CGCG	1 cut(s)	302
AciI	CCGC	4 cut(s)	300, 904, 982, 1031
AclI	AACGTT	1 cut(s)	1079
AclWI	GGATC	4 cut(s)	177, 650, 775, 922
AcsI	RAATTY	3 cut(s)	58, 271, 383
AcuI	CTGAAG	2 cut(s)	501, 939
AfaI	GTAC	3 cut(s)	569, 709, 871
AfiI	CCNNNNNNNGG	3 cut(s)	1037, 1058, 1215
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	6 cut(s)	57, 112, 265, 547, 691, 1084
AjiI	CACGTC	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	802
AluBI	AGCT	7 cut(s)	146, 316, 328, 776, 797, 824, 1072
AluI	AGCT	7 cut(s)	146, 316, 328, 776, 797, 824, 1072
Alw26I	GTCTC	4 cut(s)	187, 334, 608, 997
AlwI	GGATC	4 cut(s)	177, 650, 775, 922
AlwNI	CAGNNNCTG	2 cut(s)	443, 1103
Ama87I	CYCGRG	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	391, 797, 896
ApoI	RAATTY	3 cut(s)	58, 271, 383
AspA2I	CCTAGG	1 cut(s)	1052
AspLEI	GCGC	2 cut(s)	588, 719
AspS9I	GGNCC	5 cut(s)	222, 248, 809, 953, 1159
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	943, 1018
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	5 cut(s)	222, 248, 809, 953, 1159
AvrII	CCTAGG	1 cut(s)	1052
AxyI	CCTNAGG	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	475
BbvI	GCAGC	3 cut(s)	403, 784, 908
BccI	CCATC	6 cut(s)	194, 212, 418, 472, 758, 874
BciT130I	CCWGG	1 cut(s)	804
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	4 cut(s)	187, 334, 608, 997
BfaI	CTAG	3 cut(s)	131, 782, 1053
BfoI	RGCGCY	1 cut(s)	720
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	4 cut(s)	392, 798, 897, 1031
BlnI	CCTAGG	1 cut(s)	1052
BlsI	GCNGC	4 cut(s)	393, 799, 898, 1032
BmcAI	AGTACT	1 cut(s)	871
Bme1390I	CCNGG	2 cut(s)	349, 804
Bme18I	GGWCC	5 cut(s)	222, 248, 809, 953, 1159
BmeT110I	CYCGRG	1 cut(s)	147
BmgBI	CACGTC	1 cut(s)	344
BmgT120I	GGNCC	5 cut(s)	222, 248, 809, 953, 1159
BmiI	GGNNCC	3 cut(s)	223, 462, 678
BmrFI	CCNGG	2 cut(s)	349, 804
BmsI	GCATC	4 cut(s)	627, 837, 883, 1103
BplI	GAGNNNNNCTC	2 cut(s)	977, 1009
BpmI	CTGGAG	2 cut(s)	695, 786
BpuEI	CTTGAG	2 cut(s)	302, 696
BpuMI	CCSGG	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	1052
BsaWI	WCCGGW	1 cut(s)	1003
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	1037, 1058, 1215
Bse21I	CCTNAGG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	1 cut(s)	1052
BseGI	GGATG	2 cut(s)	519, 847
BseLI	CCNNNNNNNGG	3 cut(s)	1037, 1058, 1215
BseMII	CTCAG	2 cut(s)	116, 296
BseRI	GAGGAG	2 cut(s)	90, 352
BseXI	GCAGC	3 cut(s)	403, 784, 908
Bsh1236I	CGCG	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	348, 680, 1004
BslI	CCNNNNNNNGG	3 cut(s)	1037, 1058, 1215
BsmAI	GTCTC	4 cut(s)	187, 334, 608, 997
BsmBI	CGTCTC	1 cut(s)	334
BsmI	GAATGC	2 cut(s)	583, 1033
Bso31I	GGTCTC	1 cut(s)	187
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	182, 655, 767, 914
BspACI	CCGC	4 cut(s)	300, 904, 982, 1031
BspCNI	CTCAG	2 cut(s)	115, 295
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	3 cut(s)	223, 462, 678
BspPI	GGATC	4 cut(s)	177, 650, 775, 922
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	904
BssECI	CCNNGG	1 cut(s)	1052
BssMI	GATC	4 cut(s)	182, 655, 767, 914
BssT1I	CCWWGG	1 cut(s)	1052
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	5 cut(s)	68, 374, 524, 702, 943
Bst6I	CTCTTC	3 cut(s)	477, 500, 606
BstAFI	CTTAAG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstC8I	GCNNGC	2 cut(s)	642, 826
BstDEI	CTNAG	4 cut(s)	102, 282, 499, 947
BstF5I	GGATG	2 cut(s)	519, 847
BstFNI	CGCG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	2 cut(s)	588, 719
BstKTI	GATC	4 cut(s)	185, 658, 770, 917
BstMAI	GTCTC	4 cut(s)	187, 334, 608, 997
BstMBI	GATC	4 cut(s)	182, 655, 767, 914
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 821, 1100
BstNI	CCWGG	1 cut(s)	804
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	347, 802
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	403, 784, 908
BstX2I	RGATCY	3 cut(s)	182, 655, 914
BstYI	RGATCY	3 cut(s)	182, 655, 914
Bsu36I	CCTNAGG	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	519, 847
BtsI	GCAGTG	2 cut(s)	581, 595
BtsIMutI	CAGTG	2 cut(s)	581, 595
Cac8I	GCNNGC	2 cut(s)	642, 826
CaiI	CAGNNNCTG	2 cut(s)	443, 1103
CfoI	GCGC	2 cut(s)	588, 719
Cfr13I	GGNCC	5 cut(s)	222, 248, 809, 953, 1159
Csp6I	GTAC	3 cut(s)	568, 708, 870
CviAII	CATG	3 cut(s)	395, 433, 468
CviQI	GTAC	3 cut(s)	568, 708, 870
DdeI	CTNAG	4 cut(s)	102, 282, 499, 947
DpnI	GATC	4 cut(s)	184, 657, 769, 916
DpnII	GATC	4 cut(s)	182, 655, 767, 914
Eam1104I	CTCTTC	3 cut(s)	477, 500, 606
EarI	CTCTTC	3 cut(s)	477, 500, 606
Eco130I	CCWWGG	1 cut(s)	1052
Eco24I	GRGCYC	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	5 cut(s)	222, 248, 809, 953, 1159
Eco57I	CTGAAG	2 cut(s)	501, 939
Eco81I	CCTNAGG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	802
EcoT14I	CCWWGG	1 cut(s)	1052
EcoT22I	ATGCAT	1 cut(s)	1096
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	1052
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	3 cut(s)	398, 436, 471
FalI	AAGNNNNNCTT	4 cut(s)	474, 506, 705, 737
FatI	CATG	3 cut(s)	394, 432, 467
FauI	CCCGC	1 cut(s)	975
FauNDI	CATATG	1 cut(s)	529
FblI	GTMKAC	1 cut(s)	697
Fnu4HI	GCNGC	4 cut(s)	392, 798, 897, 1031
FokI	GGATG	2 cut(s)	526, 854
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	4 cut(s)	392, 798, 897, 1031
FspBI	CTAG	3 cut(s)	131, 782, 1053
FspI	TGCGCA	1 cut(s)	587
GlaI	GCGC	2 cut(s)	587, 718
GluI	GCNGC	4 cut(s)	392, 798, 897, 1031
GsuI	CTGGAG	2 cut(s)	695, 786
HaeII	RGCGCY	1 cut(s)	720
HapII	CCGG	3 cut(s)	348, 680, 1004
HhaI	GCGC	2 cut(s)	588, 719
Hin1II	CATG	3 cut(s)	398, 436, 471
Hin6I	GCGC	2 cut(s)	586, 717
HinP1I	GCGC	2 cut(s)	586, 717
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	5 cut(s)	352, 487, 694, 1000, 1046
HpaII	CCGG	3 cut(s)	348, 680, 1004
HphI	GGTGA	2 cut(s)	943, 1018
Hpy166II	GTNNAC	3 cut(s)	593, 698, 953
Hpy188I	TCNGA	1 cut(s)	919
Hpy188III	TCNNGA	6 cut(s)	190, 377, 674, 691, 1014, 1166
Hpy8I	GTNNAC	3 cut(s)	593, 698, 953
HpyAV	CCTTC	5 cut(s)	39, 914, 1102, 1172, 1187
HpyCH4III	ACNGT	5 cut(s)	68, 374, 524, 702, 943
HpyCH4IV	ACGT	2 cut(s)	343, 1079
HpyCH4V	TGCA	6 cut(s)	23, 173, 527, 581, 896, 1094
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 821, 1100
HpyF3I	CTNAG	4 cut(s)	102, 282, 499, 947
HpySE526I	ACGT	2 cut(s)	343, 1079
Hsp92II	CATG	3 cut(s)	398, 436, 471
HspAI	GCGC	2 cut(s)	586, 717
Kzo9I	GATC	4 cut(s)	182, 655, 767, 914
LmnI	GCTCC	2 cut(s)	676, 805
Lsp1109I	GCAGC	3 cut(s)	403, 784, 908
LweI	GCATC	4 cut(s)	627, 837, 883, 1103
MaeI	CTAG	3 cut(s)	131, 782, 1053
MaeII	ACGT	2 cut(s)	343, 1079
MaeIII	GTNAC	2 cut(s)	68, 906
MalI	GATC	4 cut(s)	184, 657, 769, 916
MbiI	CCGCTC	1 cut(s)	904
MboI	GATC	4 cut(s)	182, 655, 767, 914
MboII	GAAGA	6 cut(s)	24, 482, 487, 494, 623, 665
MfeI	CAATTG	2 cut(s)	741, 855
MflI	RGATCY	3 cut(s)	182, 655, 914
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	8 cut(s)	58, 271, 383, 741, 759, 855, 1116, 1197
MlyI	GAGTC	2 cut(s)	361, 703
MmeI	TCCRAC	2 cut(s)	397, 1137
Mph1103I	ATGCAT	1 cut(s)	1096
MseI	TTAA	6 cut(s)	164, 330, 977, 1119, 1127, 1143
MspA1I	CMGCKG	2 cut(s)	776, 797
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	3 cut(s)	348, 680, 1004
MspR9I	CCNGG	2 cut(s)	349, 804
MunI	CAATTG	2 cut(s)	741, 855
Mva1269I	GAATGC	2 cut(s)	583, 1033
MvaI	CCWGG	1 cut(s)	804
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	20, 821, 1100
NciI	CCSGG	1 cut(s)	349
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	4 cut(s)	182, 655, 767, 914
NlaIII	CATG	3 cut(s)	398, 436, 471
NlaIV	GGNNCC	3 cut(s)	223, 462, 678
NsbI	TGCGCA	1 cut(s)	587
NsiI	ATGCAT	1 cut(s)	1096
NspI	RCATGY	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	147
PctI	GAATGC	2 cut(s)	583, 1033
PfeI	GAWTC	3 cut(s)	487, 1000, 1046
PflMI	CCANNNNNTGG	1 cut(s)	1215
PfoI	TCCNGGA	1 cut(s)	802
PkrI	GCNGC	4 cut(s)	393, 799, 898, 1032
PleI	GAGTC	2 cut(s)	360, 702
PpsI	GAGTC	2 cut(s)	360, 702
PpuMI	RGGWCCY	1 cut(s)	222
PsiI	TTATAA	1 cut(s)	360
Psp1406I	AACGTT	1 cut(s)	1079
Psp5II	RGGWCCY	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	3 cut(s)	223, 462, 678
PspPI	GGNCC	5 cut(s)	222, 248, 809, 953, 1159
PspPPI	RGGWCCY	1 cut(s)	222
PspXI	VCTCGAGB	1 cut(s)	147
PstNI	CAGNNNCTG	2 cut(s)	443, 1103
PsuI	RGATCY	3 cut(s)	182, 655, 914
PvuII	CAGCTG	2 cut(s)	776, 797
RsaI	GTAC	3 cut(s)	569, 709, 871
RsaNI	GTAC	3 cut(s)	568, 708, 870
SaqAI	TTAA	6 cut(s)	164, 330, 977, 1119, 1127, 1143
SatI	GCNGC	4 cut(s)	392, 798, 897, 1031
Sau3AI	GATC	4 cut(s)	182, 655, 767, 914
Sau96I	GGNCC	5 cut(s)	222, 248, 809, 953, 1159
ScaI	AGTACT	1 cut(s)	871
SchI	GAGTC	2 cut(s)	361, 703
ScrFI	CCNGG	2 cut(s)	349, 804
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	4 cut(s)	627, 837, 883, 1103
Sfr274I	CTCGAG	1 cut(s)	147
SinI	GGWCC	5 cut(s)	222, 248, 809, 953, 1159
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	4 cut(s)	147, 317, 329, 711
SmoI	CTYRAG	4 cut(s)	147, 317, 329, 711
Sse9I	AATT	8 cut(s)	58, 271, 383, 741, 759, 855, 1116, 1197
SsiI	CCGC	4 cut(s)	300, 904, 982, 1031
SspMI	CTAG	3 cut(s)	131, 782, 1053
StyD4I	CCNGG	2 cut(s)	347, 802
StyI	CCWWGG	1 cut(s)	1052
TaaI	ACNGT	5 cut(s)	68, 374, 524, 702, 943
TaiI	ACGT	2 cut(s)	346, 1082
TaqI	TCGA	5 cut(s)	148, 227, 406, 667, 1165
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	8 cut(s)	58, 271, 383, 741, 759, 855, 1116, 1197
TatI	WGTACW	1 cut(s)	869
TauI	GCSGC	1 cut(s)	1033
TfiI	GAWTC	3 cut(s)	487, 1000, 1046
Tru1I	TTAA	6 cut(s)	164, 330, 977, 1119, 1127, 1143
Tru9I	TTAA	6 cut(s)	164, 330, 977, 1119, 1127, 1143
TscAI	CASTG	2 cut(s)	588, 595
TseI	GCWGC	3 cut(s)	391, 797, 896
TspDTI	ATGAA	1 cut(s)	614
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	588, 595
Van91I	CCANNNNNTGG	1 cut(s)	1215
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	5 cut(s)	222, 248, 809, 953, 1159
XapI	RAATTY	3 cut(s)	58, 271, 383
XceI	RCATGY	1 cut(s)	398
XhoI	CTCGAG	1 cut(s)	147
XmaJI	CCTAGG	1 cut(s)	1052
XmiI	GTMKAC	1 cut(s)	697
XspI	CTAG	3 cut(s)	131, 782, 1053
ZrmI	AGTACT	1 cut(s)	871
Zsp2I	ATGCAT	1 cut(s)	1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.