Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015134

Physical Location & Seq

Genomic Coordinates Reverse (-)

9895094 .. 9896688

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCTGGTCTTGATCTAGGCACAGCTTTTCGTTACGTTAATCACCAGCTCCATCGTCCCGATCTCCACCTTCACCACAATTCCTCCTCCGATGACGTCACTCCCGGAGCCGGGATGGGTCATTTCACCGTCGACGACGAAGACAACAACAACAACCATCAAGGTCTTGACTTAGCCTCTGGTGGAGGATCAGGAAGCTCTGGAGGAGGAGGAGGTCACGGCGGGGGAGGAGACGTCGTTGGTCGTCGTCCACGTGGCAGACCACCGGGATCCAAGAACAAACCGAAACCTCCGGTAATTATCACGCGCGAGAGCGCAAACACTCTAAGAGCTCACATTCTTGAAGTAACAAACGGCTGCGATGTTTTCGACTGCGTTGCGACTTATGCTCGTCGGAGACAGCGAGGGATCTGCGTTCTGAGCGGTAGCGGAACGGTCACGAACGTCAGCATACGTCAGCCATCTGCGGCTGGAGCGGTTGTGACGCTACAAGGAACGTTCGAGATTCTTTCTCTCTCCGGATCGTTTCTTCCTCCTCCGGCACCTCCCGGAGCAACGAGTTTGACAATTTTCTTAGCCGGAGGACAAGGTCAGGTGGTTGGAGGAAGCGTTGTGGGTGAGCTTACGGCGGCTGGACCGGTGATTGTGATTGCAGCTTCGTTTACTAATGTTGCTTATGAGAGACTTCCTTTAGAAGAAGATGAGCAGCAGCAACAGCTTGGAGGAGGATCTAACGGCGGAGGTAATTTGTTTCCGGAGGTGGCAGCTGGAGGAGGAGGAGGACTTCCGTTCTTTAATTTACCGATGAATATGCAACCAAATGTGCAACTTCCGGTGGAAGGTTGGCCGGGGAATTCCGGTGGAAGAGGTCCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

292

Amino Acids

29.72

Weight (kDa)

5.96

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	110 - 223	1.4e-23	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17800
fragaria_vesca	FvH4_5g21980
malus_domestica	MD06G1033400.v1.1 MD16G1275300.v1.1
prunus_persica	Prupe.5G037400_v2.0.a1
pyrus_communis	pycom06g02760
rosa_chinensis	RchiOBHm_Chr7g0209481
rosa_laevigata	RLG00000003125
rosa_multiflora	Rmu_ssc0000323.1_g000015
rosa_roxburghii	Rroxscaffold_3G00249350
rosa_rugosa	Rorug07G0113700
rosa_samantha	Rh7AG247800 Rh7BG242400 Rh7CG263300 Rh7DG253700
rosa_wichuraiana	Rw7G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	99, 237
AccB1I	GGYRCC	1 cut(s)	541
AccBSI	CCGCTC	2 cut(s)	423, 476
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	2 cut(s)	307, 309
AccIII	TCCGGA	2 cut(s)	518, 754
AciI	CCGC	7 cut(s)	222, 423, 429, 467, 476, 629, 738
AclI	AACGTT	1 cut(s)	497
AclWI	GGATC	6 cut(s)	196, 264, 277, 416, 529, 736
AcoI	YGGCCR	1 cut(s)	845
AcsI	RAATTY	1 cut(s)	853
AcvI	CACGTG	1 cut(s)	254
AcyI	GRCGYC	2 cut(s)	96, 234
AfiI	CCNNNNNNNGG	3 cut(s)	110, 111, 839
AgeI	ACCGGT	1 cut(s)	637
AgsI	TTSAA	1 cut(s)	344
AluBI	AGCT	8 cut(s)	26, 49, 198, 332, 622, 656, 718, 767
AluI	AGCT	8 cut(s)	26, 49, 198, 332, 622, 656, 718, 767
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	3 cut(s)	225, 391, 676
AlwI	GGATC	6 cut(s)	196, 264, 277, 416, 529, 736
Aor13HI	TCCGGA	2 cut(s)	518, 754
AoxI	GGCC	1 cut(s)	845
ApeKI	GCWGC	5 cut(s)	357, 653, 706, 709, 764
ApoI	RAATTY	1 cut(s)	853
AsiGI	ACCGGT	1 cut(s)	637
AspLEI	GCGC	2 cut(s)	309, 317
AspS9I	GGNCC	2 cut(s)	635, 869
AsuC2I	CCSGG	5 cut(s)	105, 112, 267, 549, 849
AsuHPI	GGTGA	5 cut(s)	35, 65, 118, 629, 652
AvaII	GGWCC	2 cut(s)	635, 869
BamHI	GGATCC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	334
BbrPI	CACGTG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	5 cut(s)	344, 665, 718, 721, 776
BccI	CCATC	4 cut(s)	60, 109, 165, 469
BceAI	ACGGC	4 cut(s)	235, 370, 642, 751
BcgI	CGANNNNNNTGC	6 cut(s)	359, 393, 393, 427, 793, 827
BcnI	CCSGG	5 cut(s)	105, 112, 267, 549, 849
BcoDI	GTCTC	3 cut(s)	225, 391, 676
BfaI	CTAG	1 cut(s)	17
BisI	GCNGC	7 cut(s)	358, 468, 630, 654, 707, 710, 765
BlsI	GCNGC	7 cut(s)	359, 469, 631, 655, 708, 711, 766
Bme1390I	CCNGG	5 cut(s)	105, 112, 267, 549, 849
Bme18I	GGWCC	2 cut(s)	635, 869
BmgT120I	GGNCC	2 cut(s)	635, 869
BmiI	GGNNCC	3 cut(s)	109, 271, 543
BmrFI	CCNGG	5 cut(s)	105, 112, 267, 549, 849
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	3 cut(s)	222, 492, 789
BpuMI	CCSGG	5 cut(s)	105, 112, 267, 549, 849
BsaAI	YACGTR	1 cut(s)	254
BsaHI	GRCGYC	2 cut(s)	96, 234
BsaJI	CCNNGG	1 cut(s)	848
BsaWI	WCCGGW	6 cut(s)	292, 518, 637, 754, 832, 857
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 111, 839
Bse118I	RCCGGY	1 cut(s)	637
BseAI	TCCGGA	2 cut(s)	518, 754
BseDI	CCNNGG	1 cut(s)	848
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	3 cut(s)	110, 111, 839
BseMII	CTCAG	1 cut(s)	410
BseXI	GCAGC	5 cut(s)	344, 665, 718, 721, 776
Bsh1236I	CGCG	2 cut(s)	307, 309
BshFI	GGCC	1 cut(s)	847
BshNI	GGYRCC	1 cut(s)	541
BshTI	ACCGGT	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	110, 111, 839
BsmAI	GTCTC	3 cut(s)	225, 391, 676
BsmBI	CGTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	847
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp13I	TCCGGA	2 cut(s)	518, 754
Bsp143I	GATC	7 cut(s)	13, 61, 188, 269, 408, 521, 728
BspACI	CCGC	7 cut(s)	222, 423, 429, 467, 476, 629, 738
BspANI	GGCC	1 cut(s)	847
BspCNI	CTCAG	1 cut(s)	411
BspEI	TCCGGA	2 cut(s)	518, 754
BspFNI	CGCG	2 cut(s)	307, 309
BspLI	GGNNCC	3 cut(s)	109, 271, 543
BspPI	GGATC	6 cut(s)	196, 264, 277, 416, 529, 736
BspT107I	GGYRCC	1 cut(s)	541
BsrBI	CCGCTC	2 cut(s)	423, 476
BsrFI	RCCGGY	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	1 cut(s)	848
BssMI	GATC	7 cut(s)	13, 61, 188, 269, 408, 521, 728
BssNI	GRCGYC	2 cut(s)	96, 234
Bst4CI	ACNGT	2 cut(s)	130, 436
Bst6I	CTCTTC	1 cut(s)	859
BstACI	GRCGYC	2 cut(s)	96, 234
BstBAI	YACGTR	1 cut(s)	254
BstDEI	CTNAG	4 cut(s)	172, 326, 419, 574
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	2 cut(s)	307, 309
BstHHI	GCGC	2 cut(s)	309, 317
BstKTI	GATC	7 cut(s)	16, 64, 191, 272, 411, 524, 731
BstMAI	GTCTC	3 cut(s)	225, 391, 676
BstMBI	GATC	7 cut(s)	13, 61, 188, 269, 408, 521, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	386, 420, 473, 715
BstSCI	CCNGG	5 cut(s)	103, 110, 265, 547, 847
BstUI	CGCG	2 cut(s)	307, 309
BstV1I	GCAGC	5 cut(s)	344, 665, 718, 721, 776
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	3 cut(s)	269, 408, 728
BstYI	RGATCY	3 cut(s)	269, 408, 728
BsuRI	GGCC	1 cut(s)	847
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	120
CfoI	GCGC	2 cut(s)	309, 317
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	2 cut(s)	635, 869
CseI	GACGC	1 cut(s)	493
CspAI	ACCGGT	1 cut(s)	637
DdeI	CTNAG	4 cut(s)	172, 326, 419, 574
DpnI	GATC	7 cut(s)	15, 63, 190, 271, 410, 523, 730
DpnII	GATC	7 cut(s)	13, 61, 188, 269, 408, 521, 728
EaeI	YGGCCR	1 cut(s)	845
Eam1104I	CTCTTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	859
EciI	GGCGGA	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	2 cut(s)	635, 869
Eco53kI	GAGCTC	1 cut(s)	332
Eco72I	CACGTG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	869
EcoRI	GAATTC	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	225
FaiI	YATR	4 cut(s)	387, 452, 678, 812
FalI	AAGNNNNNCTT	1 cut(s)	856
FaqI	GGGAC	1 cut(s)	42
FauI	CCCGC	1 cut(s)	215
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	7 cut(s)	358, 468, 630, 654, 707, 710, 765
FokI	GGATG	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	7 cut(s)	358, 468, 630, 654, 707, 710, 765
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	2 cut(s)	308, 316
GluI	GCNGC	7 cut(s)	358, 468, 630, 654, 707, 710, 765
GsuI	CTGGAG	3 cut(s)	222, 492, 789
HaeIII	GGCC	1 cut(s)	847
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	2 cut(s)	309, 317
Hin1I	GRCGYC	2 cut(s)	96, 234
Hin6I	GCGC	2 cut(s)	307, 315
HinP1I	GCGC	2 cut(s)	307, 315
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	1 cut(s)	505
HphI	GGTGA	5 cut(s)	35, 65, 118, 629, 652
Hpy166II	GTNNAC	3 cut(s)	133, 251, 663
Hpy188I	TCNGA	4 cut(s)	91, 396, 420, 878
Hpy8I	GTNNAC	3 cut(s)	133, 251, 663
Hpy99I	CGWCG	6 cut(s)	134, 137, 140, 239, 249, 396
HpyAV	CCTTC	2 cut(s)	80, 833
HpyCH4III	ACNGT	2 cut(s)	130, 436
HpyCH4IV	ACGT	7 cut(s)	36, 96, 234, 253, 444, 454, 497
HpyCH4V	TGCA	3 cut(s)	653, 814, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	386, 420, 473, 715
HpyF3I	CTNAG	4 cut(s)	172, 326, 419, 574
HpySE526I	ACGT	7 cut(s)	36, 96, 234, 253, 444, 454, 497
Hsp92I	GRCGYC	2 cut(s)	96, 234
HspAI	GCGC	2 cut(s)	307, 315
Kpn2I	TCCGGA	2 cut(s)	518, 754
Kzo9I	GATC	7 cut(s)	13, 61, 188, 269, 408, 521, 728
LmnI	GCTCC	4 cut(s)	54, 107, 473, 551
Lsp1109I	GCAGC	5 cut(s)	344, 665, 718, 721, 776
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	7 cut(s)	36, 96, 234, 253, 444, 454, 497
MaeIII	GTNAC	6 cut(s)	32, 97, 215, 346, 436, 481
MalI	GATC	7 cut(s)	15, 63, 190, 271, 410, 523, 730
MbiI	CCGCTC	2 cut(s)	423, 476
MboI	GATC	7 cut(s)	13, 61, 188, 269, 408, 521, 728
MboII	GAAGA	5 cut(s)	152, 521, 707, 710, 876
MflI	RGATCY	3 cut(s)	269, 408, 728
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	6 cut(s)	79, 297, 567, 745, 796, 853
MmeI	TCCRAC	2 cut(s)	374, 580
MroI	TCCGGA	2 cut(s)	518, 754
MseI	TTAA	2 cut(s)	39, 795
MspA1I	CMGCKG	1 cut(s)	767
MspR9I	CCNGG	5 cut(s)	105, 112, 267, 549, 849
MvnI	CGCG	2 cut(s)	307, 309
MwoI	GCNNNNNNNGC	4 cut(s)	386, 420, 473, 715
NciI	CCSGG	5 cut(s)	105, 112, 267, 549, 849
NdeII	GATC	7 cut(s)	13, 61, 188, 269, 408, 521, 728
NlaIV	GGNNCC	3 cut(s)	109, 271, 543
NmuCI	GTSAC	4 cut(s)	97, 215, 436, 481
PcsI	WCGNNNNNNNCGW	2 cut(s)	250, 400
PfeI	GAWTC	1 cut(s)	505
PflFI	GACNNNGTC	1 cut(s)	588
PfoI	TCCNGGA	2 cut(s)	103, 547
PinAI	ACCGGT	1 cut(s)	637
PkrI	GCNGC	7 cut(s)	359, 469, 631, 655, 708, 711, 766
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	869
Psp124BI	GAGCTC	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	869
PspCI	CACGTG	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	109, 271, 543
PspPI	GGNCC	2 cut(s)	635, 869
PspPPI	RGGWCCY	1 cut(s)	869
PsuI	RGATCY	3 cut(s)	269, 408, 728
PsyI	GACNNNGTC	1 cut(s)	588
PvuII	CAGCTG	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	334
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	39, 795
SatI	GCNGC	7 cut(s)	358, 468, 630, 654, 707, 710, 765
Sau3AI	GATC	7 cut(s)	13, 61, 188, 269, 408, 521, 728
Sau96I	GGNCC	2 cut(s)	635, 869
ScrFI	CCNGG	5 cut(s)	105, 112, 267, 549, 849
SduI	GDGCHC	1 cut(s)	334
SgrDI	CGTCGACG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	635, 869
Sse9I	AATT	6 cut(s)	79, 297, 567, 745, 796, 853
SsiI	CCGC	7 cut(s)	222, 423, 429, 467, 476, 629, 738
SspMI	CTAG	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	334
StyD4I	CCNGG	5 cut(s)	103, 110, 265, 547, 847
TaaI	ACNGT	2 cut(s)	130, 436
TaiI	ACGT	7 cut(s)	39, 99, 237, 256, 447, 457, 500
TaqI	TCGA	3 cut(s)	132, 369, 501
TasI	AATT	6 cut(s)	79, 297, 567, 745, 796, 853
TauI	GCSGC	2 cut(s)	470, 632
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	2 cut(s)	39, 795
Tru9I	TTAA	2 cut(s)	39, 795
TseFI	GTSAC	4 cut(s)	97, 215, 436, 481
TseI	GCWGC	5 cut(s)	357, 653, 706, 709, 764
Tsp45I	GTSAC	4 cut(s)	97, 215, 436, 481
TspDTI	ATGAA	1 cut(s)	821
TspGWI	ACGGA	1 cut(s)	777
Tth111I	GACNNNGTC	1 cut(s)	588
VpaK11BI	GGWCC	2 cut(s)	635, 869
XapI	RAATTY	1 cut(s)	853
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	1 cut(s)	17
ZraI	GACGTC	2 cut(s)	97, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.