Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015134

Physical Location & Seq

Genomic Coordinates Reverse (-)

8887957 .. 8888738

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0113700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGAGCAACCTTGGCACATGAGATGATGCATGGATGGTTCCGCCTTCAAGGTATGCCAATGGGATGTGAAAATAGCCCTGAAGAAGGTATTTGCCAAGTAATGTCTTACAAATGGTTGCAGTGGTTTTCATCCAGTGGTCTTGATACCTCGCACAAAACCAATCAGCAAGTTCAATATACAAGAAAGCTGAAAGAGTTCTTAGTAGAAGAAATTCGGTCTCGAGAAGACGAAGTTTATGGCCAAGGATTCAGAGATGCTATGCAAGCTGTTGAAACATTTGGCTTTAAAACCACACTAGACCATGCCGTTAAAAATGGAACTCTACCACTACCTATGATGGATAGTACACGCTCCACCGCCACAGCTGCCGCAGTCACCACTACCACCAAGAAGTTAATAAGAAAGAATACCAGTGCCACCCCAATAACTCGGTTATTATGGAAGGTGACCAGCAATACAACCAAATCATTATGGAAGGCCACAGCTGCCGCAATAACTGACTTATTATGGAAGGCGGCCACCACCTACGAAATGCCGCGGTTTATTATTATGGAAGGTCACTGCCACAACCAATATCATCAAGGGCAAAGCCATAAAAACTTACAAGAAGGCATGTCCTTGTCCCCTATGCTCCTTGTATTTATTGGTATACTAATTGAACACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048443 GO:0048466 GO:0048467 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

223

Amino Acids

25.3

Weight (kDa)

8.96

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DA1-like	PF12315	2 - 103	1.7e-27	Protein DA1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0015134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17800
fragaria_vesca	FvH4_5g21980
malus_domestica	MD06G1033400.v1.1 MD16G1275300.v1.1
prunus_persica	Prupe.5G037400_v2.0.a1
pyrus_communis	pycom06g02760
rosa_chinensis	RchiOBHm_Chr7g0209481
rosa_laevigata	RLG00000003125
rosa_multiflora	Rmu_ssc0000323.1_g000015
rosa_roxburghii	Rroxscaffold_3G00249350
rosa_rugosa	Rorug07G0113700
rosa_samantha	Rh7AG247800 Rh7BG242400 Rh7CG263300 Rh7DG253700
rosa_wichuraiana	Rw7G020910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	652
AccII	CGCG	1 cut(s)	541
AciI	CCGC	7 cut(s)	43, 360, 372, 492, 518, 539, 541
AcoI	YGGCCR	2 cut(s)	241, 519
AcsI	RAATTY	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	4 cut(s)	50, 176, 275, 662
AluBI	AGCT	4 cut(s)	190, 269, 368, 488
AluI	AGCT	4 cut(s)	190, 269, 368, 488
Alw26I	GTCTC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	3 cut(s)	241, 480, 519
ApeKI	GCWGC	2 cut(s)	368, 488
ApoI	RAATTY	1 cut(s)	213
Asp700I	GAANNNNTTC	2 cut(s)	197, 213
AsuHPI	GGTGA	2 cut(s)	370, 460
AvaI	CYCGRG	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	355, 475
BccI	CCATC	2 cut(s)	30, 334
BceAI	ACGGC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	6 cut(s)	369, 372, 489, 492, 519, 539
BlsI	GCNGC	6 cut(s)	370, 373, 490, 493, 520, 540
BmeT110I	CYCGRG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	41
BmsI	GCATC	2 cut(s)	18, 247
BpiI	GAAGAC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	12, 244, 539
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	135, 414
BseDI	CCNNGG	3 cut(s)	12, 244, 539
BseGI	GGATG	3 cut(s)	41, 71, 131
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	135, 414
BseXI	GCAGC	2 cut(s)	355, 475
Bsh1236I	CGCG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	243, 482, 521
BsiHKCI	CYCGRG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	3 cut(s)	243, 482, 521
Bso31I	GGTCTC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	222
BspACI	CCGC	7 cut(s)	43, 360, 372, 492, 518, 539, 541
BspANI	GGCC	3 cut(s)	243, 482, 521
BspFNI	CGCG	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	135, 414
BssECI	CCNNGG	3 cut(s)	12, 244, 539
BssNAI	GTATAC	1 cut(s)	653
BssT1I	CCWWGG	2 cut(s)	12, 244
Bst1107I	GTATAC	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	539
BstEII	GGTNACC	1 cut(s)	448
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	41, 71, 131
BstFNI	CGCG	1 cut(s)	541
BstMAI	GTCTC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 266, 368, 488
BstNSI	RCATGY	1 cut(s)	619
BstPI	GGTNACC	1 cut(s)	448
BstUI	CGCG	1 cut(s)	541
BstV1I	GCAGC	2 cut(s)	355, 475
BstV2I	GAAGAC	1 cut(s)	234
BstZ17I	GTATAC	1 cut(s)	653
BsuRI	GGCC	3 cut(s)	243, 482, 521
BtgI	CCRYGG	1 cut(s)	539
BtsCI	GGATG	3 cut(s)	41, 71, 131
BtsI	GCAGTG	2 cut(s)	128, 562
BtsIMutI	CAGTG	4 cut(s)	128, 142, 421, 562
Cac8I	GCNNGC	1 cut(s)	267
Cfr42I	CCGCGG	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	4 cut(s)	20, 32, 305, 616
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	202
DraI	TTTAAA	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	241, 519
EciI	GGCGGA	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	12, 244
Eco31I	GGTCTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	222
Eco91I	GGTNACC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	12, 244
EcoT22I	ATGCAT	1 cut(s)	33
ErhI	CCWWGG	2 cut(s)	12, 244
FaeI	CATG	4 cut(s)	23, 35, 308, 619
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	4 cut(s)	19, 31, 304, 615
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	6 cut(s)	369, 372, 489, 492, 519, 539
FokI	GGATG	3 cut(s)	48, 78, 118
Fsp4HI	GCNGC	6 cut(s)	369, 372, 489, 492, 519, 539
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	6 cut(s)	369, 372, 489, 492, 519, 539
HaeIII	GGCC	3 cut(s)	243, 482, 521
Hin1II	CATG	4 cut(s)	23, 35, 308, 619
HinfI	GANTC	1 cut(s)	249
HphI	GGTGA	2 cut(s)	370, 460
Hpy166II	GTNNAC	2 cut(s)	350, 653
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	143, 222, 224
Hpy8I	GTNNAC	2 cut(s)	350, 653
HpyAV	CCTTC	7 cut(s)	56, 80, 439, 472, 508, 551, 605
HpyCH4V	TGCA	3 cut(s)	31, 121, 265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 266, 368, 488
HpyF3I	CTNAG	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	23, 35, 308, 619
KspI	CCGCGG	1 cut(s)	542
LmnI	GCTCC	3 cut(s)	5, 359, 639
LpnPI	CCDG	5 cut(s)	93, 148, 427, 466, 652
Lsp1109I	GCAGC	2 cut(s)	355, 475
LweI	GCATC	2 cut(s)	18, 247
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	376, 448, 560
MboII	GAAGA	3 cut(s)	95, 221, 239
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	213, 657
MluNI	TGGCCA	1 cut(s)	243
MnlI	CCTC	1 cut(s)	160
Mox20I	TGGCCA	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	33
MroXI	GAANNNNTTC	2 cut(s)	197, 213
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	3 cut(s)	288, 312, 398
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	3 cut(s)	368, 488, 541
MvnI	CGCG	1 cut(s)	541
MwoI	GCNNNNNNNGC	4 cut(s)	14, 266, 368, 488
NlaIII	CATG	4 cut(s)	23, 35, 308, 619
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	3 cut(s)	376, 448, 560
NsiI	ATGCAT	1 cut(s)	33
NspI	RCATGY	1 cut(s)	619
PaeR7I	CTCGAG	1 cut(s)	222
PdmI	GAANNNNTTC	2 cut(s)	197, 213
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	6 cut(s)	370, 373, 490, 493, 520, 540
PspEI	GGTNACC	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	41
PvuII	CAGCTG	2 cut(s)	368, 488
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SacII	CCGCGG	1 cut(s)	542
SaqAI	TTAA	3 cut(s)	288, 312, 398
SatI	GCNGC	6 cut(s)	369, 372, 489, 492, 519, 539
SfaNI	GCATC	2 cut(s)	18, 247
Sfr274I	CTCGAG	1 cut(s)	222
Sfr303I	CCGCGG	1 cut(s)	542
SgrBI	CCGCGG	1 cut(s)	542
SlaI	CTCGAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	2 cut(s)	213, 657
SsiI	CCGC	7 cut(s)	43, 360, 372, 492, 518, 539, 541
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	12, 244
TaqI	TCGA	1 cut(s)	223
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	213, 657
TatI	WGTACW	1 cut(s)	347
TauI	GCSGC	4 cut(s)	374, 494, 521, 541
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	3 cut(s)	288, 312, 398
Tru9I	TTAA	3 cut(s)	288, 312, 398
TscAI	CASTG	4 cut(s)	128, 142, 421, 569
TseFI	GTSAC	3 cut(s)	376, 448, 560
TseI	GCWGC	2 cut(s)	368, 488
Tsp45I	GTSAC	3 cut(s)	376, 448, 560
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	4 cut(s)	128, 142, 421, 569
XagI	CCTNNNNNAGG	1 cut(s)	84
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	619
XhoI	CTCGAG	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	652
XmnI	GAANNNNTTC	2 cut(s)	197, 213
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.