MD16G1275300.v1.1

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
36853751 .. 36854632
882 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1275300.v1.1.491

Sequence Viewer

Length: 882 bp
ATGGCTGGTTTGGATTTAGGCTCAGCTTCTCGCTACGTTCACCAGCTTCACAGGCAAGACTTGCAACTCCAACAACAACATCAACAGCAAACCGATTCTGAAGACGATGCAGTAGCCAACAGGTCAACGGGCCGGTTCTCATCAGGAGATGATCATCAGGGTAGCCTCAACCTCGGAGGCATCAACGGTGGGTCAGGAGAGATCGTGGCCCGCCGGCCTCGAGGCCGTCCACCAGGATCCAAAAACAAGCCAAAACCACCGGTCATCATCACAAGAGAGAGTGCAAACACTCTTAGAGCACATATTCTGGAGGTAGGCAACGGCTGCGACGTCTTTGATTGCGTCGCCACGTACGCTCGGCGCCGCCAGCGTGGGATCTGTATTTTGAGCGGCAGTGGCACCGTTACTAATGTGACCTTGCGGCAGCCGGCCGCAGTAGGGGCCGTAGTAACCCTTCATGGAAGGTTTGAGATTTTATCCCTTTCAGGGTCATTTTTACCACCGCCCGCCCCGCCCGGGGCCACAAGCTTGACCATATTCTTGGCCGGCGGGCAGGGACAGGTTGTCGGGGGAAGCGTTGTTGGGGAGTTGACCACGGCAGGGCCTGTTATTGTGATCGCCTCATCGTTTACTAATGTTGCTTACGAGAGGCTGCCTTTGGATGAAGAGGAGCAGTTGCAGGTACAGGATCCCCAGGGATCCGGGGGTACTGGTGGCGGTGGTGGTGGAGTTGGTGGTGTTAGTGTTGGGAACAATCCTTTTCCAGACCCGTCTTCGGGGCTTCCATTCTTCAATTTGCCGCTGAATATGCAAAATGTTCAGTTGCCATTCGATGGGTGGGCTGGAGATGGAAATAACTCAGGGGATCGTCCACCATTCTGA

Protein Analysis

294

Amino Acids

30.41

Weight (kDa)

5.85

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 99 - 212 4.5e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17800
fragaria_vesca FvH4_5g21980
malus_domestica MD06G1033400.v1.1 MD16G1275300.v1.1
prunus_persica Prupe.5G037400_v2.0.a1
pyrus_communis pycom06g02760
rosa_chinensis RchiOBHm_Chr7g0209481
rosa_laevigata RLG00000003125
rosa_multiflora Rmu_ssc0000323.1_g000015
rosa_roxburghii Rroxscaffold_3G00249350
rosa_rugosa Rorug07G0113700
rosa_samantha Rh7AG247800 Rh7BG242400 Rh7CG263300 Rh7DG253700
rosa_wichuraiana Rw7G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AbsI CCTCGAGG 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 670
AccB1I GGYRCC 2 cut(s) 360, 398
AccB7I CCANNNNNTGG 1 cut(s) 833
AccBSI CCGCTC 1 cut(s) 390
AclWI GGATC 8 cut(s) 231, 244, 383, 683, 693, 696, 706, 873
AcoI YGGCCR 2 cut(s) 429, 543
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 2 cut(s) 330, 361
AfaI GTAC 3 cut(s) 353, 684, 709
AfiI CCNNNNNNNGG 8 cut(s) 438, 486, 516, 517, 600, 775, 776, 833
AgeI ACCGGT 1 cut(s) 259
AgsI TTSAA 1 cut(s) 793
AhdI GACNNNNNGTC 1 cut(s) 563
AjnI CCWGG 2 cut(s) 232, 693
AluBI AGCT 3 cut(s) 26, 46, 528
AluI AGCT 3 cut(s) 26, 46, 528
Alw21I GWGCWC 1 cut(s) 301
AlwI GGATC 8 cut(s) 231, 244, 383, 683, 693, 696, 706, 873
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 2 cut(s) 219, 515
AoxI GGCC 9 cut(s) 130, 207, 215, 223, 429, 441, 519, 543, 602
ApeKI GCWGC 3 cut(s) 324, 424, 652
AsiGI ACCGGT 1 cut(s) 259
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 5 cut(s) 130, 208, 441, 519, 602
AsuC2I CCSGG 3 cut(s) 516, 517, 703
AsuHPI GGTGA 1 cut(s) 32
AvaI CYCGRG 2 cut(s) 219, 515
BamHI GGATCC 3 cut(s) 236, 688, 698
BanI GGYRCC 2 cut(s) 360, 398
BarI GAAGNNNNNNTAC 2 cut(s) 438, 470
BbsI GAAGAC 2 cut(s) 108, 765
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 3 cut(s) 311, 436, 639
BccI CCATC 2 cut(s) 827, 842
BceAI ACGGC 4 cut(s) 210, 337, 428, 612
BciT130I CCWGG 2 cut(s) 234, 695
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 3 cut(s) 516, 517, 703
BfoI RGCGCY 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 670
BisI GCNGC 8 cut(s) 325, 364, 391, 422, 425, 432, 653, 800
BlpI GCTNAGC 1 cut(s) 22
BlsI GCNGC 8 cut(s) 326, 365, 392, 423, 426, 433, 654, 801
Bme1390I CCNGG 5 cut(s) 234, 516, 517, 695, 703
BmeRI GACNNNNNGTC 1 cut(s) 563
BmeT110I CYCGRG 2 cut(s) 219, 515
BmgT120I GGNCC 5 cut(s) 130, 208, 441, 519, 602
BmiI GGNNCC 7 cut(s) 238, 362, 400, 442, 520, 690, 700
BmrFI CCNGG 5 cut(s) 234, 516, 517, 695, 703
BmsI GCATC 2 cut(s) 97, 189
BpiI GAAGAC 2 cut(s) 108, 765
BpmI CTGGAG 2 cut(s) 329, 864
Bpu1102I GCTNAGC 1 cut(s) 22
BpuMI CCSGG 3 cut(s) 516, 517, 703
BsaAI YACGTR 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 153
BsaHI GRCGYC 2 cut(s) 330, 361
BsaJI CCNNGG 7 cut(s) 172, 515, 516, 594, 693, 694, 702
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 8 cut(s) 438, 486, 516, 517, 600, 775, 776, 833
Bse118I RCCGGY 5 cut(s) 132, 213, 259, 427, 545
Bse1I ACTGG 1 cut(s) 715
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 2 cut(s) 234, 695
BseDI CCNNGG 7 cut(s) 172, 515, 516, 594, 693, 694, 702
BseGI GGATG 1 cut(s) 667
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 8 cut(s) 438, 486, 516, 517, 600, 775, 776, 833
BseMII CTCAG 2 cut(s) 36, 873
BseNI ACTGG 1 cut(s) 715
BseRI GAGGAG 1 cut(s) 683
BseX3I CGGCCG 1 cut(s) 429
BseXI GCAGC 3 cut(s) 311, 436, 639
Bsh1285I CGRYCG 1 cut(s) 432
BshFI GGCC 9 cut(s) 132, 209, 217, 225, 431, 443, 521, 545, 604
BshNI GGYRCC 2 cut(s) 360, 398
BshTI ACCGGT 1 cut(s) 259
BsiEI CGRYCG 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 301
BsiHKCI CYCGRG 2 cut(s) 219, 515
BsiSI CCGG 7 cut(s) 133, 214, 260, 428, 516, 546, 702
BsiWI CGTACG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 8 cut(s) 438, 486, 516, 517, 600, 775, 776, 833
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 9 cut(s) 132, 209, 217, 225, 431, 443, 521, 545, 604
BsoBI CYCGRG 2 cut(s) 219, 515
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 8 cut(s) 151, 201, 236, 375, 615, 688, 698, 865
Bsp1720I GCTNAGC 1 cut(s) 22
BspANI GGCC 9 cut(s) 132, 209, 217, 225, 431, 443, 521, 545, 604
BspCNI CTCAG 2 cut(s) 35, 872
BspLI GGNNCC 7 cut(s) 238, 362, 400, 442, 520, 690, 700
BspMI ACCTGC 1 cut(s) 670
BspPI GGATC 8 cut(s) 231, 244, 383, 683, 693, 696, 706, 873
BspT107I GGYRCC 2 cut(s) 360, 398
BsrBI CCGCTC 1 cut(s) 390
BsrFI RCCGGY 5 cut(s) 132, 213, 259, 427, 545
BsrI ACTGG 1 cut(s) 715
BssAI RCCGGY 5 cut(s) 132, 213, 259, 427, 545
BssECI CCNNGG 7 cut(s) 172, 515, 516, 594, 693, 694, 702
BssMI GATC 8 cut(s) 151, 201, 236, 375, 615, 688, 698, 865
BssNI GRCGYC 2 cut(s) 330, 361
Bst2UI CCWGG 2 cut(s) 234, 695
Bst4CI ACNGT 2 cut(s) 188, 403
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 2 cut(s) 330, 361
BstAPI GCANNNNNTGC 2 cut(s) 61, 324
BstBAI YACGTR 1 cut(s) 351
BstC8I GCNNGC 7 cut(s) 211, 215, 368, 429, 507, 547, 551
BstDEI CTNAG 3 cut(s) 22, 293, 859
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 667
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 8 cut(s) 154, 204, 239, 378, 618, 691, 701, 868
BstMBI GATC 8 cut(s) 151, 201, 236, 375, 615, 688, 698, 865
BstMCI CGRYCG 1 cut(s) 432
BstMWI GCNNNNNNNGC 9 cut(s) 52, 61, 324, 353, 367, 396, 440, 511, 808
BstNI CCWGG 2 cut(s) 234, 695
BstSCI CCNGG 5 cut(s) 232, 514, 515, 693, 701
BstV1I GCAGC 3 cut(s) 311, 436, 639
BstV2I GAAGAC 2 cut(s) 108, 765
BstX2I RGATCY 4 cut(s) 236, 375, 688, 698
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 4 cut(s) 236, 375, 688, 698
BstZI CGGCCG 1 cut(s) 429
BsuRI GGCC 9 cut(s) 132, 209, 217, 225, 431, 443, 521, 545, 604
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 667
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 7 cut(s) 211, 215, 368, 429, 507, 547, 551
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 5 cut(s) 132, 213, 259, 427, 545
Cfr13I GGNCC 5 cut(s) 130, 208, 441, 519, 602
Cfr9I CCCGGG 1 cut(s) 515
CseI GACGC 1 cut(s) 331
Csp6I GTAC 3 cut(s) 352, 683, 708
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 1 cut(s) 458
CviQI GTAC 3 cut(s) 352, 683, 708
DdeI CTNAG 3 cut(s) 22, 293, 859
DinI GGCGCC 1 cut(s) 362
DpnI GATC 8 cut(s) 153, 203, 238, 377, 617, 690, 700, 867
DpnII GATC 8 cut(s) 151, 201, 236, 375, 615, 688, 698, 865
DriI GACNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 2 cut(s) 429, 543
EagI CGGCCG 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 660
Eam1105I GACNNNNNGTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 660
EclXI CGGCCG 1 cut(s) 429
Eco52I CGGCCG 1 cut(s) 429
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 2 cut(s) 219, 515
EcoO109I RGGNCCY 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 232, 693
EgeI GGCGCC 1 cut(s) 362
EheI GGCGCC 1 cut(s) 362
FaeI CATG 1 cut(s) 461
FaiI YATR 4 cut(s) 303, 459, 536, 809
FaqI GGGAC 1 cut(s) 570
FatI CATG 1 cut(s) 457
FauI CCCGC 4 cut(s) 218, 514, 519, 542
FbaI TGATCA 1 cut(s) 151
Fnu4HI GCNGC 8 cut(s) 325, 364, 391, 422, 425, 432, 653, 800
FokI GGATG 1 cut(s) 674
Fsp4HI GCNGC 8 cut(s) 325, 364, 391, 422, 425, 432, 653, 800
GlaI GCGC 1 cut(s) 362
GluI GCNGC 8 cut(s) 325, 364, 391, 422, 425, 432, 653, 800
GsuI CTGGAG 2 cut(s) 329, 864
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 9 cut(s) 132, 209, 217, 225, 431, 443, 521, 545, 604
HapII CCGG 7 cut(s) 133, 214, 260, 428, 516, 546, 702
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 2 cut(s) 330, 361
Hin1II CATG 1 cut(s) 461
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 2 cut(s) 126, 591
HindII GTYRAC 2 cut(s) 126, 591
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 1 cut(s) 95
HpaII CCGG 7 cut(s) 133, 214, 260, 428, 516, 546, 702
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 6 cut(s) 40, 126, 230, 591, 630, 872
Hpy188I TCNGA 3 cut(s) 100, 176, 881
Hpy188III TCNNGA 4 cut(s) 144, 195, 308, 764
Hpy8I GTNNAC 6 cut(s) 40, 126, 230, 591, 630, 872
Hpy99I CGWCG 2 cut(s) 332, 347
HpyAV CCTTC 2 cut(s) 456, 464
HpyCH4III ACNGT 2 cut(s) 188, 403
HpyCH4IV ACGT 3 cut(s) 36, 330, 350
HpyCH4V TGCA 5 cut(s) 64, 110, 284, 679, 811
HpyF10VI GCNNNNNNNGC 9 cut(s) 52, 61, 324, 353, 367, 396, 440, 511, 808
HpyF3I CTNAG 3 cut(s) 22, 293, 859
HpySE526I ACGT 3 cut(s) 36, 330, 350
Hsp92I GRCGYC 2 cut(s) 330, 361
Hsp92II CATG 1 cut(s) 461
HspAI GCGC 1 cut(s) 361
KasI GGCGCC 1 cut(s) 360
KroI GCCGGC 3 cut(s) 213, 427, 545
KroNI GCCGGC 3 cut(s) 215, 429, 547
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 8 cut(s) 151, 201, 236, 375, 615, 688, 698, 865
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 3 cut(s) 311, 436, 639
LweI GCATC 2 cut(s) 97, 189
MaeII ACGT 3 cut(s) 36, 330, 350
MaeIII GTNAC 3 cut(s) 403, 412, 448
MalI GATC 8 cut(s) 153, 203, 238, 377, 617, 690, 700, 867
MbiI CCGCTC 1 cut(s) 390
MboI GATC 8 cut(s) 151, 201, 236, 375, 615, 688, 698, 865
MboII GAAGA 4 cut(s) 113, 677, 765, 781
MflI RGATCY 4 cut(s) 236, 375, 688, 698
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 1 cut(s) 793
Mly113I GGCGCC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 9 cut(s) 170, 176, 182, 215, 228, 304, 631, 642, 661
MroNI GCCGGC 3 cut(s) 213, 427, 545
MspA1I CMGCKG 1 cut(s) 802
MspI CCGG 7 cut(s) 133, 214, 260, 428, 516, 546, 702
MspR9I CCNGG 5 cut(s) 234, 516, 517, 695, 703
MvaI CCWGG 2 cut(s) 234, 695
MwoI GCNNNNNNNGC 9 cut(s) 52, 61, 324, 353, 367, 396, 440, 511, 808
NaeI GCCGGC 3 cut(s) 215, 429, 547
NarI GGCGCC 1 cut(s) 361
NciI CCSGG 3 cut(s) 516, 517, 703
NdeII GATC 8 cut(s) 151, 201, 236, 375, 615, 688, 698, 865
NgoMIV GCCGGC 3 cut(s) 213, 427, 545
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 7 cut(s) 238, 362, 400, 442, 520, 690, 700
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 412
PaeR7I CTCGAG 1 cut(s) 219
PasI CCCWGGG 1 cut(s) 694
PcsI WCGNNNNNNNCGW 2 cut(s) 327, 573
PdiI GCCGGC 3 cut(s) 215, 429, 547
PfeI GAWTC 1 cut(s) 95
Pfl23II CGTACG 1 cut(s) 351
PflMI CCANNNNNTGG 1 cut(s) 833
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 8 cut(s) 326, 365, 392, 423, 426, 433, 654, 801
PluTI GGCGCC 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 351
Psp6I CCWGG 2 cut(s) 232, 693
PspGI CCWGG 2 cut(s) 232, 693
PspLI CGTACG 1 cut(s) 351
PspN4I GGNNCC 7 cut(s) 238, 362, 400, 442, 520, 690, 700
PspPI GGNCC 5 cut(s) 130, 208, 441, 519, 602
PspXI VCTCGAGB 1 cut(s) 219
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 4 cut(s) 236, 375, 688, 698
RsaI GTAC 3 cut(s) 353, 684, 709
RsaNI GTAC 3 cut(s) 352, 683, 708
SatI GCNGC 8 cut(s) 325, 364, 391, 422, 425, 432, 653, 800
Sau3AI GATC 8 cut(s) 151, 201, 236, 375, 615, 688, 698, 865
Sau96I GGNCC 5 cut(s) 130, 208, 441, 519, 602
ScrFI CCNGG 5 cut(s) 234, 516, 517, 695, 703
SduI GDGCHC 1 cut(s) 301
SfaNI GCATC 2 cut(s) 97, 189
SfoI GGCGCC 1 cut(s) 362
Sfr274I CTCGAG 1 cut(s) 219
SlaI CTCGAG 1 cut(s) 219
SmaI CCCGGG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 1 cut(s) 793
SspDI GGCGCC 1 cut(s) 360
StyD4I CCNGG 5 cut(s) 232, 514, 515, 693, 701
TaaI ACNGT 2 cut(s) 188, 403
TaiI ACGT 3 cut(s) 39, 333, 353
TaqI TCGA 2 cut(s) 220, 831
TasI AATT 1 cut(s) 793
TauI GCSGC 5 cut(s) 366, 393, 424, 434, 802
TfiI GAWTC 1 cut(s) 95
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 3 cut(s) 324, 424, 652
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 446, 678
TspMI CCCGGG 1 cut(s) 515
TspRI CASTG 1 cut(s) 400
Van91I CCANNNNNTGG 1 cut(s) 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 834
XhoI CTCGAG 1 cut(s) 219
XmaI CCCGGG 1 cut(s) 515
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.