pycom06g02760

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
3336001 .. 3336873
873 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02760.1

Sequence Viewer

Length: 873 bp
ATGGCCGGTTTGGATTTAGGCTCAGTTCCTCGCTACGTTCACCAGCTTCACAGGCAAGACTTGCACCTCCAACAACAACAACAGCAAACCGATTCTGAAGACGATGCAGTAGTCAAAAGGTCAACGGGCCAGTTCTCAGGAGATGACCATCATCAGGGTGGCCTCGACCTCGGAGGCATCAACGGCGGGTCAGGAGACATCGTGGCTCGTCGTCCTCGAGGCCGTCCACCTGGATCCAAAAACAAGCCAAAACCACCAGTCATCATCACAAGAGAGAGTGCAAACACTCTCAGAGCACATATTCTGGAGGTAGGCAACGGCTGCGACGTCTTTGACTGCGTCGCCACGTATGCTAGGCGCCGCCAGCGTGGGATCTGTATTTTGAGCGGAAGTGGCACCGTCACTAATGTGACCTTGCGGCAGCCGGCCGCAGCAGGGGCCGTAGTAACACTTCATGGACGGTTTGAGATTTTATCCCTTTCAGGGTCATTTTTACCACCTCCTGCCCCACCCGGGGCCACAAGCTTGACCATATTCTTGGCCGGCGGGCAGGGGCAGGTTGTCGGGGGCAGCGTTGTCGGGGAGTTGACCGCGGCAGGGCCCGTTATTGTGATCGCCTCATCCTTTACTAATGTTGCTTATGAGAGGCTGCCTTTGGATGAAGAGGAACAGTTGCAAGTACAGGTCCCACAGGGATCCGGGGGAAGTGGCGGCGGCGGCGGCGGTGGTGGTAGTGTTGGAAACAACCCTTTTCCTGACCCGTCCTCGGGGCTTCCATTCTTCAATTTGCCATTGAATATGCAGAATGTTCAGTTGCCAATCGATGGGTGGGCTGGAAATGGAAATAACTCAGGGGGTCGTCCACCATTCTGA

Protein Analysis

291

Amino Acids

29.96

Weight (kDa)

6.37

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 98 - 211 1.2e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17800
fragaria_vesca FvH4_5g21980
malus_domestica MD06G1033400.v1.1 MD16G1275300.v1.1
prunus_persica Prupe.5G037400_v2.0.a1
pyrus_communis pycom06g02760
rosa_chinensis RchiOBHm_Chr7g0209481
rosa_laevigata RLG00000003125
rosa_multiflora Rmu_ssc0000323.1_g000015
rosa_roxburghii Rroxscaffold_3G00249350
rosa_rugosa Rorug07G0113700
rosa_samantha Rh7AG247800 Rh7BG242400 Rh7CG263300 Rh7DG253700
rosa_wichuraiana Rw7G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 330
AbsI CCTCGAGG 1 cut(s) 216
Acc36I ACCTGC 1 cut(s) 547
AccB1I GGYRCC 2 cut(s) 357, 395
AccB7I CCANNNNNTGG 1 cut(s) 824
AccBSI CCGCTC 1 cut(s) 387
AccII CGCG 1 cut(s) 593
AclWI GGATC 5 cut(s) 228, 241, 380, 690, 703
AcoI YGGCCR 3 cut(s) 3, 426, 540
AcuI CTGAAG 1 cut(s) 117
AcyI GRCGYC 2 cut(s) 327, 358
AfaI GTAC 1 cut(s) 681
AfiI CCNNNNNNNGG 9 cut(s) 154, 435, 483, 513, 514, 597, 766, 767, 824
AgsI TTSAA 2 cut(s) 784, 796
AjnI CCWGG 1 cut(s) 229
AleI CACNNNNGTG 1 cut(s) 407
AluBI AGCT 2 cut(s) 46, 525
AluI AGCT 2 cut(s) 46, 525
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 5 cut(s) 228, 241, 380, 690, 703
Ama87I CYCGRG 3 cut(s) 216, 512, 766
AoxI GGCC 9 cut(s) 3, 127, 160, 220, 426, 438, 516, 540, 599
ApaI GGGCCC 1 cut(s) 603
ApeKI GCWGC 5 cut(s) 321, 421, 431, 570, 649
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 6 cut(s) 127, 438, 516, 599, 600, 685
AsuC2I CCSGG 3 cut(s) 513, 514, 700
AsuHPI GGTGA 1 cut(s) 32
AvaI CYCGRG 3 cut(s) 216, 512, 766
AvaII GGWCC 1 cut(s) 685
BaeGI GKGCMC 1 cut(s) 603
BamHI GGATCC 2 cut(s) 233, 695
BanI GGYRCC 2 cut(s) 357, 395
BanII GRGCYC 1 cut(s) 603
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 5 cut(s) 308, 433, 443, 582, 636
BccI CCATC 2 cut(s) 156, 818
BceAI ACGGC 4 cut(s) 199, 207, 334, 425
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 231
BcnI CCSGG 3 cut(s) 513, 514, 700
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 354
BfoI RGCGCY 1 cut(s) 361
BfuAI ACCTGC 1 cut(s) 547
Bme1390I CCNGG 4 cut(s) 231, 513, 514, 700
Bme18I GGWCC 1 cut(s) 685
BmeT110I CYCGRG 3 cut(s) 216, 512, 766
BmgT120I GGNCC 6 cut(s) 127, 438, 516, 599, 600, 685
BmiI GGNNCC 8 cut(s) 235, 359, 397, 439, 517, 601, 687, 697
BmrFI CCNGG 4 cut(s) 231, 513, 514, 700
BmsI GCATC 2 cut(s) 94, 186
BpiI GAAGAC 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 326
BpuMI CCSGG 3 cut(s) 513, 514, 700
Bsa29I ATCGAT 1 cut(s) 822
BsaAI YACGTR 1 cut(s) 348
BsaBI GATNNNNATC 1 cut(s) 147
BsaHI GRCGYC 2 cut(s) 327, 358
BsaJI CCNNGG 6 cut(s) 169, 512, 513, 591, 699, 765
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 9 cut(s) 154, 435, 483, 513, 514, 597, 766, 767, 824
Bse118I RCCGGY 3 cut(s) 5, 424, 542
Bse1I ACTGG 2 cut(s) 130, 257
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 231
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 6 cut(s) 169, 512, 513, 591, 699, 765
BseGI GGATG 2 cut(s) 620, 664
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 9 cut(s) 154, 435, 483, 513, 514, 597, 766, 767, 824
BseMII CTCAG 4 cut(s) 36, 150, 304, 864
BseNI ACTGG 2 cut(s) 130, 257
BseSI GKGCMC 1 cut(s) 603
BseX3I CGGCCG 1 cut(s) 426
BseXI GCAGC 5 cut(s) 308, 433, 443, 582, 636
Bsh1236I CGCG 1 cut(s) 593
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 9 cut(s) 5, 129, 162, 222, 428, 440, 518, 542, 601
BshNI GGYRCC 2 cut(s) 357, 395
BshVI ATCGAT 1 cut(s) 822
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 3 cut(s) 216, 512, 766
BsiSI CCGG 5 cut(s) 6, 425, 513, 543, 699
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 9 cut(s) 154, 435, 483, 513, 514, 597, 766, 767, 824
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 9 cut(s) 5, 129, 162, 222, 428, 440, 518, 542, 601
BsoBI CYCGRG 3 cut(s) 216, 512, 766
Bsp120I GGGCCC 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 298, 603
Bsp143I GATC 4 cut(s) 233, 372, 612, 695
BspANI GGCC 9 cut(s) 5, 129, 162, 222, 428, 440, 518, 542, 601
BspCNI CTCAG 4 cut(s) 35, 149, 303, 863
BspDI ATCGAT 1 cut(s) 822
BspFNI CGCG 1 cut(s) 593
BspLI GGNNCC 8 cut(s) 235, 359, 397, 439, 517, 601, 687, 697
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 5 cut(s) 228, 241, 380, 690, 703
BspT107I GGYRCC 2 cut(s) 357, 395
BsrBI CCGCTC 1 cut(s) 387
BsrFI RCCGGY 3 cut(s) 5, 424, 542
BsrI ACTGG 2 cut(s) 130, 257
BssAI RCCGGY 3 cut(s) 5, 424, 542
BssECI CCNNGG 6 cut(s) 169, 512, 513, 591, 699, 765
BssMI GATC 4 cut(s) 233, 372, 612, 695
BssNI GRCGYC 2 cut(s) 327, 358
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 400, 462, 672
Bst6I CTCTTC 1 cut(s) 657
BstACI GRCGYC 2 cut(s) 327, 358
BstAPI GCANNNNNTGC 2 cut(s) 61, 321
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 4 cut(s) 365, 426, 544, 548
BstDEI CTNAG 4 cut(s) 22, 136, 290, 850
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 620, 664
BstFNI CGCG 1 cut(s) 593
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 4 cut(s) 236, 375, 615, 698
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 4 cut(s) 233, 372, 612, 695
BstMCI CGRYCG 1 cut(s) 429
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 4 cut(s) 229, 511, 512, 698
BstSLI GKGCMC 1 cut(s) 603
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 5 cut(s) 308, 433, 443, 582, 636
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 3 cut(s) 233, 372, 695
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 3 cut(s) 233, 372, 695
BstZI CGGCCG 1 cut(s) 426
Bsu15I ATCGAT 1 cut(s) 822
BsuRI GGCC 9 cut(s) 5, 129, 162, 222, 428, 440, 518, 542, 601
BsuTUI ATCGAT 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 2 cut(s) 620, 664
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 4 cut(s) 365, 426, 544, 548
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 3 cut(s) 5, 424, 542
Cfr13I GGNCC 6 cut(s) 127, 438, 516, 599, 600, 685
Cfr42I CCGCGG 1 cut(s) 594
Cfr9I CCCGGG 1 cut(s) 512
ClaI ATCGAT 1 cut(s) 822
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 680
CviAII CATG 1 cut(s) 455
CviQI GTAC 1 cut(s) 680
DdeI CTNAG 4 cut(s) 22, 136, 290, 850
DinI GGCGCC 1 cut(s) 359
DpnI GATC 4 cut(s) 235, 374, 614, 697
DpnII GATC 4 cut(s) 233, 372, 612, 695
EaeI YGGCCR 3 cut(s) 3, 426, 540
EagI CGGCCG 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
EclXI CGGCCG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 685
Eco52I CGGCCG 1 cut(s) 426
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 3 cut(s) 216, 512, 766
EcoO109I RGGNCCY 2 cut(s) 599, 685
EcoRII CCWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 359
EheI GGCGCC 1 cut(s) 359
FaeI CATG 1 cut(s) 458
FaiI YATR 6 cut(s) 300, 351, 456, 533, 642, 800
FaqI GGGAC 1 cut(s) 671
FatI CATG 1 cut(s) 454
FauI CCCGC 2 cut(s) 179, 539
FokI GGATG 2 cut(s) 607, 671
FriOI GRGCYC 1 cut(s) 603
FspBI CTAG 1 cut(s) 354
GlaI GCGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 9 cut(s) 5, 129, 162, 222, 428, 440, 518, 542, 601
HapII CCGG 5 cut(s) 6, 425, 513, 543, 699
HgaI GACGC 1 cut(s) 328
HhaI GCGC 1 cut(s) 360
Hin1I GRCGYC 2 cut(s) 327, 358
Hin1II CATG 1 cut(s) 458
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HincII GTYRAC 2 cut(s) 123, 588
HindII GTYRAC 2 cut(s) 123, 588
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 1 cut(s) 92
HpaII CCGG 5 cut(s) 6, 425, 513, 543, 699
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 5 cut(s) 40, 123, 227, 588, 863
Hpy188I TCNGA 4 cut(s) 97, 173, 293, 872
Hpy188III TCNNGA 4 cut(s) 138, 192, 305, 755
Hpy8I GTNNAC 5 cut(s) 40, 123, 227, 588, 863
Hpy99I CGWCG 3 cut(s) 213, 329, 344
HpyCH4III ACNGT 3 cut(s) 400, 462, 672
HpyCH4IV ACGT 3 cut(s) 36, 327, 347
HpyCH4V TGCA 5 cut(s) 64, 107, 281, 676, 802
HpyF3I CTNAG 4 cut(s) 22, 136, 290, 850
HpySE526I ACGT 3 cut(s) 36, 327, 347
Hsp92I GRCGYC 2 cut(s) 327, 358
Hsp92II CATG 1 cut(s) 458
HspAI GCGC 1 cut(s) 358
KasI GGCGCC 1 cut(s) 357
KroI GCCGGC 2 cut(s) 424, 542
KroNI GCCGGC 2 cut(s) 426, 544
KspI CCGCGG 1 cut(s) 594
Kzo9I GATC 4 cut(s) 233, 372, 612, 695
Lsp1109I GCAGC 5 cut(s) 308, 433, 443, 582, 636
LweI GCATC 2 cut(s) 94, 186
MaeI CTAG 1 cut(s) 354
MaeII ACGT 3 cut(s) 36, 327, 347
MaeIII GTNAC 3 cut(s) 400, 409, 445
MalI GATC 4 cut(s) 235, 374, 614, 697
MbiI CCGCTC 1 cut(s) 387
MboI GATC 4 cut(s) 233, 372, 612, 695
MboII GAAGA 3 cut(s) 110, 674, 772
MflI RGATCY 3 cut(s) 233, 372, 695
MhlI GDGCHC 2 cut(s) 298, 603
MluCI AATT 1 cut(s) 784
Mly113I GGCGCC 1 cut(s) 358
MmeI TCCRAC 2 cut(s) 94, 718
MroNI GCCGGC 2 cut(s) 424, 542
MslI CAYNNNNRTG 2 cut(s) 156, 407
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 5 cut(s) 6, 425, 513, 543, 699
MspR9I CCNGG 4 cut(s) 231, 513, 514, 700
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 593
NaeI GCCGGC 2 cut(s) 426, 544
NarI GGCGCC 1 cut(s) 358
NciI CCSGG 3 cut(s) 513, 514, 700
NdeII GATC 4 cut(s) 233, 372, 612, 695
NgoMIV GCCGGC 2 cut(s) 424, 542
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 8 cut(s) 235, 359, 397, 439, 517, 601, 687, 697
NmuCI GTSAC 2 cut(s) 400, 409
OliI CACNNNNGTG 1 cut(s) 407
PaeR7I CTCGAG 1 cut(s) 216
PcsI WCGNNNNNNNCGW 3 cut(s) 214, 324, 570
PdiI GCCGGC 2 cut(s) 426, 544
PfeI GAWTC 1 cut(s) 92
PflFI GACNNNGTC 1 cut(s) 338
PflMI CCANNNNNTGG 1 cut(s) 824
PluTI GGCGCC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 685
Psp5II RGGWCCY 1 cut(s) 685
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 8 cut(s) 235, 359, 397, 439, 517, 601, 687, 697
PspOMI GGGCCC 1 cut(s) 599
PspPI GGNCC 6 cut(s) 127, 438, 516, 599, 600, 685
PspPPI RGGWCCY 1 cut(s) 685
PspXI VCTCGAGB 1 cut(s) 216
PsuI RGATCY 3 cut(s) 233, 372, 695
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 1 cut(s) 681
RsaNI GTAC 1 cut(s) 680
RseI CAYNNNNRTG 2 cut(s) 156, 407
SacII CCGCGG 1 cut(s) 594
Sau3AI GATC 4 cut(s) 233, 372, 612, 695
Sau96I GGNCC 6 cut(s) 127, 438, 516, 599, 600, 685
ScrFI CCNGG 4 cut(s) 231, 513, 514, 700
SduI GDGCHC 2 cut(s) 298, 603
SfaNI GCATC 2 cut(s) 94, 186
SfoI GGCGCC 1 cut(s) 359
Sfr274I CTCGAG 1 cut(s) 216
Sfr303I CCGCGG 1 cut(s) 594
SgrBI CCGCGG 1 cut(s) 594
SinI GGWCC 1 cut(s) 685
SlaI CTCGAG 1 cut(s) 216
SmaI CCCGGG 1 cut(s) 514
SmiMI CAYNNNNRTG 2 cut(s) 156, 407
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 1 cut(s) 784
SspDI GGCGCC 1 cut(s) 357
SspMI CTAG 1 cut(s) 354
StyD4I CCNGG 4 cut(s) 229, 511, 512, 698
TaaI ACNGT 3 cut(s) 400, 462, 672
TaiI ACGT 3 cut(s) 39, 330, 350
TaqI TCGA 3 cut(s) 165, 217, 822
TasI AATT 1 cut(s) 784
TatI WGTACW 1 cut(s) 679
TauI GCSGC 8 cut(s) 363, 421, 431, 596, 714, 717, 720, 723
TfiI GAWTC 1 cut(s) 92
TseFI GTSAC 2 cut(s) 400, 409
TseI GCWGC 5 cut(s) 321, 421, 431, 570, 649
Tsp45I GTSAC 2 cut(s) 400, 409
TspDTI ATGAA 2 cut(s) 443, 675
TspMI CCCGGG 1 cut(s) 512
Tth111I GACNNNGTC 1 cut(s) 338
Van91I CCANNNNNTGG 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 685
XcmI CCANNNNNNNNNTGG 2 cut(s) 155, 825
XhoI CTCGAG 1 cut(s) 216
XmaI CCCGGG 1 cut(s) 512
XspI CTAG 1 cut(s) 354
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.