FvH4_5g21980

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
13358828 .. 13360788
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21980.t1

Sequence Viewer

Length: 876 bp
ATGGCTGGTTTGGATTTAGGCTACGTTCACCAGCTCAACAGGCAAGATCACTTGCACCAGCAGCTCCAGAGAACCCAGCAGCAACATCAGCAACAATCGCATCATGATACCGAAGAAGACGTCAACCAAGGCCAGTACTCCGGCGAAGACCAGGGCCTCGACCTCAGCGGCGGCATCAACGCCGGCCCCGGAGACATCGTGGGACGCAGGCCCCGCGGCCGCCCTCCCGGATCCAAAAACAAGCCCAAGCCGCCGGTCATCATAACAAGAGAAAGTGCAAACACTCTCCGAGCTCATATTCTCGAGGTCGGCAACGGCTGTGACGTCTTCGACTGCGTTGCCACGTACGCGCGGCGACGCCAGCGCGGGATCTGTATTCTCAGCGGCAGCGGCACCGTCACCAATGTCAGCTTGCGGCAGCCAGCAGCGGCAGGAGCTGTGGTTACCCTGCACGGAAGGTTTGAGATACTTTCCCTTTCTGGATCCTTTCTGCCTCCACCTGCCCCGCCCGGAGCGACAAGTTTGACTATATTCTTGGCCGGCGGGCAGGGCCAGGTGGTCGGAGGCAGCGTCGTGGGGGAGTTGACCGCAGCCGGACCAGTCATAGTGATTGCCTCGTCTTTTACTAATGTTGCTTACGAGAGGTTACCCTTGGAGGAAGAGGAGCAGCTGCAGATTCAGCCCCAGGCGGGATCTCAAGGTTCAGGAGGAAGCGGGGGAGGTGGCGGTGGTGTGGGAAACAACAACCCTTTTCCTGACCCATCTTCGGGGCTTCCGTTCTTCAATCTGCCGCTGAATATGCAAAATGTTCAGTTACCAATTGACGGGTGGGCCGGCAACAACAACAACTCTCCAGGAAGTCGTCCGCCATTTTAG

Protein Analysis

292

Amino Acids

30.45

Weight (kDa)

6.05

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 97 - 210 3.3e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17800
fragaria_vesca FvH4_5g21980
malus_domestica MD06G1033400.v1.1 MD16G1275300.v1.1
prunus_persica Prupe.5G037400_v2.0.a1
pyrus_communis pycom06g02760
rosa_chinensis RchiOBHm_Chr7g0209481
rosa_laevigata RLG00000003125
rosa_multiflora Rmu_ssc0000323.1_g000015
rosa_roxburghii Rroxscaffold_3G00249350
rosa_rugosa Rorug07G0113700
rosa_samantha Rh7AG247800 Rh7BG242400 Rh7CG263300 Rh7DG253700
rosa_wichuraiana Rw7G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 508
AatII GACGTC 2 cut(s) 123, 327
Acc36I ACCTGC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 392
AccII CGCG 4 cut(s) 216, 350, 352, 366
AclWI GGATC 6 cut(s) 225, 238, 377, 477, 490, 700
AcoI YGGCCR 2 cut(s) 217, 537
AcyI GRCGYC 3 cut(s) 120, 324, 358
AfaI GTAC 2 cut(s) 137, 347
AfiI CCNNNNNNNGG 4 cut(s) 689, 766, 767, 824
AgsI TTSAA 1 cut(s) 784
AjnI CCWGG 4 cut(s) 150, 552, 684, 853
AluBI AGCT 6 cut(s) 34, 64, 293, 411, 437, 670
AluI AGCT 6 cut(s) 34, 64, 293, 411, 437, 670
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 6 cut(s) 225, 238, 377, 477, 490, 700
AlwNI CAGNNNCTG 1 cut(s) 437
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 8 cut(s) 130, 154, 184, 209, 217, 537, 550, 831
ApeKI GCWGC 9 cut(s) 61, 79, 387, 418, 425, 567, 590, 667, 670
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspLEI GCGC 2 cut(s) 352, 366
AspS9I GGNCC 6 cut(s) 154, 185, 210, 550, 596, 831
AsuC2I CCSGG 3 cut(s) 189, 228, 510
AsuHPI GGTGA 2 cut(s) 20, 391
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 596
BamHI GGATCC 2 cut(s) 230, 482
BanI GGYRCC 1 cut(s) 392
BanII GRGCYC 1 cut(s) 295
BbsI GAAGAC 3 cut(s) 123, 153, 319
Bbv12I GWGCWC 1 cut(s) 295
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 9 cut(s) 73, 91, 399, 430, 437, 579, 602, 657, 679
BccI CCATC 1 cut(s) 769
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 4 cut(s) 152, 554, 686, 855
BcnI CCSGG 3 cut(s) 189, 228, 510
BcoDI GTCTC 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 508
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 7 cut(s) 152, 189, 228, 510, 554, 686, 855
Bme18I GGWCC 1 cut(s) 596
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 6 cut(s) 154, 185, 210, 550, 596, 831
BmiI GGNNCC 5 cut(s) 187, 212, 232, 394, 484
BmrFI CCNGG 7 cut(s) 152, 189, 228, 510, 554, 686, 855
BmsI GCATC 2 cut(s) 109, 183
BpiI GAAGAC 3 cut(s) 123, 153, 319
BpmI CTGGAG 2 cut(s) 50, 837
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 681
BpuMI CCSGG 3 cut(s) 189, 228, 510
BsaAI YACGTR 1 cut(s) 345
BsaHI GRCGYC 3 cut(s) 120, 324, 358
BsaJI CCNNGG 6 cut(s) 127, 151, 187, 214, 651, 684
BsaXI ACNNNNNCTCC 6 cut(s) 183, 213, 426, 456, 555, 585
Bsc4I CCNNNNNNNGG 4 cut(s) 689, 766, 767, 824
Bse118I RCCGGY 4 cut(s) 182, 253, 539, 833
Bse1I ACTGG 2 cut(s) 133, 599
BseBI CCWGG 4 cut(s) 152, 554, 686, 855
BseDI CCNNGG 6 cut(s) 127, 151, 187, 214, 651, 684
BseLI CCNNNNNNNGG 4 cut(s) 689, 766, 767, 824
BseMII CTCAG 2 cut(s) 178, 394
BseNI ACTGG 2 cut(s) 133, 599
BseRI GAGGAG 1 cut(s) 677
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 9 cut(s) 73, 91, 399, 430, 437, 579, 602, 657, 679
BseYI CCCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 434
Bsh1236I CGCG 4 cut(s) 216, 350, 352, 366
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 8 cut(s) 132, 156, 186, 211, 219, 539, 552, 833
BshNI GGYRCC 1 cut(s) 392
BsiEI CGRYCG 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 9 cut(s) 141, 183, 189, 228, 254, 510, 540, 594, 834
BsiWI CGTACG 1 cut(s) 345
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 689, 766, 767, 824
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 8 cut(s) 132, 156, 186, 211, 219, 539, 552, 833
BsoBI CYCGRG 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 5 cut(s) 46, 230, 369, 482, 692
BspANI GGCC 8 cut(s) 132, 156, 186, 211, 219, 539, 552, 833
BspCNI CTCAG 2 cut(s) 177, 393
BspFNI CGCG 4 cut(s) 216, 350, 352, 366
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 5 cut(s) 187, 212, 232, 394, 484
BspMAI CTGCAG 1 cut(s) 675
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 6 cut(s) 225, 238, 377, 477, 490, 700
BspT107I GGYRCC 1 cut(s) 392
BsrFI RCCGGY 4 cut(s) 182, 253, 539, 833
BsrI ACTGG 2 cut(s) 133, 599
BssAI RCCGGY 4 cut(s) 182, 253, 539, 833
BssECI CCNNGG 6 cut(s) 127, 151, 187, 214, 651, 684
BssMI GATC 5 cut(s) 46, 230, 369, 482, 692
BssNI GRCGYC 3 cut(s) 120, 324, 358
BssT1I CCWWGG 2 cut(s) 127, 651
Bst2UI CCWGG 4 cut(s) 152, 554, 686, 855
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 654
BstACI GRCGYC 3 cut(s) 120, 324, 358
BstBAI YACGTR 1 cut(s) 345
BstC8I GCNNGC 8 cut(s) 184, 209, 362, 413, 423, 541, 545, 835
BstDEI CTNAG 2 cut(s) 164, 380
BstDSI CCRYGG 1 cut(s) 214
BstEII GGTNACC 2 cut(s) 442, 645
BstFNI CGCG 4 cut(s) 216, 350, 352, 366
BstHHI GCGC 2 cut(s) 352, 366
BstKTI GATC 5 cut(s) 49, 233, 372, 485, 695
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 5 cut(s) 46, 230, 369, 482, 692
BstMCI CGRYCG 1 cut(s) 220
BstNI CCWGG 4 cut(s) 152, 554, 686, 855
BstPI GGTNACC 2 cut(s) 442, 645
BstSCI CCNGG 7 cut(s) 150, 187, 226, 508, 552, 684, 853
BstSFI CTRYAG 1 cut(s) 671
BstUI CGCG 4 cut(s) 216, 350, 352, 366
BstV1I GCAGC 9 cut(s) 73, 91, 399, 430, 437, 579, 602, 657, 679
BstV2I GAAGAC 3 cut(s) 123, 153, 319
BstX2I RGATCY 4 cut(s) 230, 369, 482, 692
BstYI RGATCY 4 cut(s) 230, 369, 482, 692
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 8 cut(s) 132, 156, 186, 211, 219, 539, 552, 833
BtgI CCRYGG 1 cut(s) 214
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 8 cut(s) 184, 209, 362, 413, 423, 541, 545, 835
CaiI CAGNNNCTG 1 cut(s) 437
CciI TCATGA 1 cut(s) 103
CciNI GCGGCCGC 1 cut(s) 217
CfoI GCGC 2 cut(s) 352, 366
Cfr10I RCCGGY 4 cut(s) 182, 253, 539, 833
Cfr13I GGNCC 6 cut(s) 154, 185, 210, 550, 596, 831
Cfr42I CCGCGG 1 cut(s) 217
CseI GACGC 3 cut(s) 213, 366, 559
Csp6I GTAC 2 cut(s) 136, 346
CviAII CATG 1 cut(s) 104
CviQI GTAC 2 cut(s) 136, 346
DdeI CTNAG 2 cut(s) 164, 380
DpnI GATC 5 cut(s) 48, 232, 371, 484, 694
DpnII GATC 5 cut(s) 46, 230, 369, 482, 692
EaeI YGGCCR 2 cut(s) 217, 537
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
EciI GGCGGA 1 cut(s) 855
Ecl136II GAGCTC 1 cut(s) 293
EclXI CGGCCG 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 127, 651
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 596
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 293
Eco88I CYCGRG 1 cut(s) 302
Eco91I GGTNACC 2 cut(s) 442, 645
EcoICRI GAGCTC 1 cut(s) 293
EcoO109I RGGNCCY 2 cut(s) 154, 210
EcoO65I GGTNACC 2 cut(s) 442, 645
EcoRII CCWGG 4 cut(s) 150, 552, 684, 853
EcoT14I CCWWGG 2 cut(s) 127, 651
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 2 cut(s) 127, 651
FaeI CATG 1 cut(s) 107
FaiI YATR 6 cut(s) 105, 263, 297, 530, 605, 800
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 103
FauI CCCGC 6 cut(s) 221, 359, 513, 536, 682, 707
FriOI GRGCYC 1 cut(s) 295
GlaI GCGC 2 cut(s) 351, 365
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 2 cut(s) 50, 837
HaeIII GGCC 8 cut(s) 132, 156, 186, 211, 219, 539, 552, 833
HapII CCGG 9 cut(s) 141, 183, 189, 228, 254, 510, 540, 594, 834
HgaI GACGC 3 cut(s) 213, 366, 559
HhaI GCGC 2 cut(s) 352, 366
Hin1I GRCGYC 3 cut(s) 120, 324, 358
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 2 cut(s) 350, 364
HinP1I GCGC 2 cut(s) 350, 364
HincII GTYRAC 2 cut(s) 124, 585
HindII GTYRAC 2 cut(s) 124, 585
HinfI GANTC 1 cut(s) 676
HpaII CCGG 9 cut(s) 141, 183, 189, 228, 254, 510, 540, 594, 834
HphI GGTGA 2 cut(s) 20, 391
Hpy166II GTNNAC 3 cut(s) 28, 124, 585
Hpy188I TCNGA 2 cut(s) 290, 563
Hpy188III TCNNGA 6 cut(s) 67, 104, 302, 480, 705, 755
Hpy8I GTNNAC 3 cut(s) 28, 124, 585
Hpy99I CGWCG 2 cut(s) 360, 575
HpyAV CCTTC 1 cut(s) 450
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 4 cut(s) 24, 120, 324, 344
HpyCH4V TGCA 5 cut(s) 55, 278, 451, 673, 802
HpyF3I CTNAG 2 cut(s) 164, 380
HpySE526I ACGT 4 cut(s) 24, 120, 324, 344
Hsp92I GRCGYC 3 cut(s) 120, 324, 358
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 2 cut(s) 350, 364
KroI GCCGGC 3 cut(s) 182, 539, 833
KroNI GCCGGC 3 cut(s) 184, 541, 835
KspI CCGCGG 1 cut(s) 217
Kzo9I GATC 5 cut(s) 46, 230, 369, 482, 692
LmnI GCTCC 4 cut(s) 69, 434, 512, 664
Lsp1109I GCAGC 9 cut(s) 73, 91, 399, 430, 437, 579, 602, 657, 679
LweI GCATC 2 cut(s) 109, 183
MaeII ACGT 4 cut(s) 24, 120, 324, 344
MaeIII GTNAC 5 cut(s) 320, 397, 442, 645, 813
MalI GATC 5 cut(s) 48, 232, 371, 484, 694
MboI GATC 5 cut(s) 46, 230, 369, 482, 692
MboII GAAGA 7 cut(s) 125, 128, 158, 319, 671, 756, 772
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 4 cut(s) 230, 369, 482, 692
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 1 cut(s) 819
MmeI TCCRAC 1 cut(s) 541
MroNI GCCGGC 3 cut(s) 182, 539, 833
MspA1I CMGCKG 7 cut(s) 168, 216, 384, 390, 428, 670, 793
MspI CCGG 9 cut(s) 141, 183, 189, 228, 254, 510, 540, 594, 834
MspR9I CCNGG 7 cut(s) 152, 189, 228, 510, 554, 686, 855
MunI CAATTG 1 cut(s) 819
MvaI CCWGG 4 cut(s) 152, 554, 686, 855
MvnI CGCG 4 cut(s) 216, 350, 352, 366
NaeI GCCGGC 3 cut(s) 184, 541, 835
NciI CCSGG 3 cut(s) 189, 228, 510
NdeII GATC 5 cut(s) 46, 230, 369, 482, 692
NgoMIV GCCGGC 3 cut(s) 182, 539, 833
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 5 cut(s) 187, 212, 232, 394, 484
NmuCI GTSAC 2 cut(s) 320, 397
NotI GCGGCCGC 1 cut(s) 217
PaeR7I CTCGAG 1 cut(s) 302
PagI TCATGA 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 508
PcsI WCGNNNNNNNCGW 3 cut(s) 321, 567, 773
PdiI GCCGGC 3 cut(s) 184, 541, 835
PfeI GAWTC 1 cut(s) 676
Pfl23II CGTACG 1 cut(s) 345
PfoI TCCNGGA 2 cut(s) 226, 853
Ppu21I YACGTR 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 295
Psp6I CCWGG 4 cut(s) 150, 552, 684, 853
PspEI GGTNACC 2 cut(s) 442, 645
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 4 cut(s) 150, 552, 684, 853
PspLI CGTACG 1 cut(s) 345
PspN4I GGNNCC 5 cut(s) 187, 212, 232, 394, 484
PspPI GGNCC 6 cut(s) 154, 185, 210, 550, 596, 831
PstI CTGCAG 1 cut(s) 675
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 4 cut(s) 230, 369, 482, 692
PvuII CAGCTG 1 cut(s) 670
RsaI GTAC 2 cut(s) 137, 347
RsaNI GTAC 2 cut(s) 136, 346
SacI GAGCTC 1 cut(s) 295
SacII CCGCGG 1 cut(s) 217
Sau3AI GATC 5 cut(s) 46, 230, 369, 482, 692
Sau96I GGNCC 6 cut(s) 154, 185, 210, 550, 596, 831
ScaI AGTACT 1 cut(s) 137
ScrFI CCNGG 7 cut(s) 152, 189, 228, 510, 554, 686, 855
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 2 cut(s) 109, 183
SfcI CTRYAG 1 cut(s) 671
Sfr274I CTCGAG 1 cut(s) 302
Sfr303I CCGCGG 1 cut(s) 217
SgrBI CCGCGG 1 cut(s) 217
SinI GGWCC 1 cut(s) 596
SlaI CTCGAG 1 cut(s) 302
SmlI CTYRAG 2 cut(s) 302, 696
SmoI CTYRAG 2 cut(s) 302, 696
Sse9I AATT 1 cut(s) 819
SstI GAGCTC 1 cut(s) 295
StyD4I CCNGG 7 cut(s) 150, 187, 226, 508, 552, 684, 853
StyI CCWWGG 2 cut(s) 127, 651
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 4 cut(s) 27, 123, 327, 347
TaqI TCGA 3 cut(s) 159, 303, 330
TasI AATT 1 cut(s) 819
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 676
TseFI GTSAC 2 cut(s) 320, 397
TseI GCWGC 9 cut(s) 61, 79, 387, 418, 425, 567, 590, 667, 670
Tsp45I GTSAC 2 cut(s) 320, 397
TspGWI ACGGA 2 cut(s) 468, 765
VpaK11BI GGWCC 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XhoI CTCGAG 1 cut(s) 302
ZraI GACGTC 2 cut(s) 121, 325
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.