MD06G1033400.v1.1

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
4043000 .. 4043872
873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1033400.v1.1.491

Sequence Viewer

Length: 873 bp
ATGGCCGGTTTGGATTTAGGCTCAGTTCCTCGCTACGTTCACCAGCTTCACAGGCAAGACTTGCACCTCCAACAACAACAACAACAGCAAACCGATTCTGAAGACGATGCAATAGTCAAAAGGTCAACGGGCCAGTTCTCAGGAGATGACCATCATCAGGGTGGCCTCGACCTCGGAGGCATCAACGGCGGGTCAGGAGACATCGTGGCTCGTCGTCCTCGAGGCCGTCCACCTGGATCCAAAAACAAGCCAAAACCACCAGTCATCATCACAAGAGAGAGTGCAAACACTCTCAGAGCACATATTCTGGAGGTAGGCAACGGCTGCGACGTCTTTGACTGCGTCGCCACGTATGCCAGGCGCCGCCAGCGTGGGATCTGTATTTTGAGCGGAAGTGGCACCGTCACTAATGTGACCTTGCGGCAGCCGGCAGCAGCAGGGGCCGTAGTAACACTTCATGGACGGTTTGAGATTTTATCCCTTTCAGGGTCATTTTTACCACCTCCTGCCCCACCCGGGGCCACAAGCTTGACCATATTCTTGGCCGGCGGGCAGGGGCAGGTTGTCGGGGGCAGCGTTGTCGGGGAGTTGACCGCGGCAGGGCCCGTTATTGTGATCGCCTCATCGTTTACTAATGTTGCTTATGAGAGGCTGCCTTTGGATGAAGAGGAACAGTTGCAAGTACAGGTCCCACAGGGATCCGGGGGAAGTGGTGGCGGCGGCGGTGGTGGTAGTGTTGGAAACAACCCTTTTCCTGACCCGTCCTCGGGGCTTCCATTCTTCAATTTGCCATTGAATATGCAGAATGTTCAGTTGCCAATCGATGGGTGGGCTGGAAATGGAAATAACTCAGGGGGTCGTCCACTATTCTGA

Protein Analysis

291

Amino Acids

30.06

Weight (kDa)

6.37

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 99 - 212 1.2e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17800
fragaria_vesca FvH4_5g21980
malus_domestica MD06G1033400.v1.1 MD16G1275300.v1.1
prunus_persica Prupe.5G037400_v2.0.a1
pyrus_communis pycom06g02760
rosa_chinensis RchiOBHm_Chr7g0209481
rosa_laevigata RLG00000003125
rosa_multiflora Rmu_ssc0000323.1_g000015
rosa_roxburghii Rroxscaffold_3G00249350
rosa_rugosa Rorug07G0113700
rosa_samantha Rh7AG247800 Rh7BG242400 Rh7CG263300 Rh7DG253700
rosa_wichuraiana Rw7G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 333
AbsI CCTCGAGG 1 cut(s) 219
Acc36I ACCTGC 1 cut(s) 550
AccB1I GGYRCC 2 cut(s) 360, 398
AccB7I CCANNNNNTGG 1 cut(s) 824
AccBSI CCGCTC 1 cut(s) 390
AccII CGCG 1 cut(s) 596
AclWI GGATC 5 cut(s) 231, 244, 383, 693, 706
AcoI YGGCCR 2 cut(s) 3, 543
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 2 cut(s) 330, 361
AfaI GTAC 1 cut(s) 684
AfiI CCNNNNNNNGG 8 cut(s) 157, 486, 516, 517, 600, 766, 767, 824
AgsI TTSAA 2 cut(s) 784, 796
AjnI CCWGG 2 cut(s) 232, 356
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 2 cut(s) 46, 528
AluI AGCT 2 cut(s) 46, 528
Alw21I GWGCWC 1 cut(s) 301
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 5 cut(s) 231, 244, 383, 693, 706
Ama87I CYCGRG 3 cut(s) 219, 515, 766
AoxI GGCC 8 cut(s) 3, 130, 163, 223, 441, 519, 543, 602
ApaI GGGCCC 1 cut(s) 606
ApeKI GCWGC 6 cut(s) 324, 424, 431, 434, 573, 652
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 6 cut(s) 130, 441, 519, 602, 603, 688
AsuC2I CCSGG 3 cut(s) 516, 517, 703
AsuHPI GGTGA 1 cut(s) 32
AvaI CYCGRG 3 cut(s) 219, 515, 766
AvaII GGWCC 1 cut(s) 688
BaeGI GKGCMC 1 cut(s) 606
BamHI GGATCC 2 cut(s) 236, 698
BanI GGYRCC 2 cut(s) 360, 398
BanII GRGCYC 1 cut(s) 606
BarI GAAGNNNNNNTAC 2 cut(s) 438, 470
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 6 cut(s) 311, 436, 443, 446, 585, 639
BccI CCATC 2 cut(s) 159, 818
BceAI ACGGC 4 cut(s) 202, 210, 337, 428
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 2 cut(s) 234, 358
BcnI CCSGG 3 cut(s) 516, 517, 703
BcoDI GTCTC 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 550
Bme1390I CCNGG 5 cut(s) 234, 358, 516, 517, 703
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 3 cut(s) 219, 515, 766
BmgT120I GGNCC 6 cut(s) 130, 441, 519, 602, 603, 688
BmiI GGNNCC 8 cut(s) 238, 362, 400, 442, 520, 604, 690, 700
BmrFI CCNGG 5 cut(s) 234, 358, 516, 517, 703
BmsI GCATC 2 cut(s) 97, 189
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 1 cut(s) 329
BpuMI CCSGG 3 cut(s) 516, 517, 703
Bsa29I ATCGAT 1 cut(s) 822
BsaAI YACGTR 1 cut(s) 351
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 2 cut(s) 330, 361
BsaJI CCNNGG 6 cut(s) 172, 515, 516, 594, 702, 765
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 8 cut(s) 157, 486, 516, 517, 600, 766, 767, 824
Bse118I RCCGGY 3 cut(s) 5, 427, 545
Bse1I ACTGG 2 cut(s) 133, 260
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 2 cut(s) 234, 358
BseCI ATCGAT 1 cut(s) 822
BseDI CCNNGG 6 cut(s) 172, 515, 516, 594, 702, 765
BseGI GGATG 1 cut(s) 667
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 8 cut(s) 157, 486, 516, 517, 600, 766, 767, 824
BseMII CTCAG 4 cut(s) 36, 153, 307, 864
BseNI ACTGG 2 cut(s) 133, 260
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 6 cut(s) 311, 436, 443, 446, 585, 639
Bsh1236I CGCG 1 cut(s) 596
BshFI GGCC 8 cut(s) 5, 132, 165, 225, 443, 521, 545, 604
BshNI GGYRCC 2 cut(s) 360, 398
BshVI ATCGAT 1 cut(s) 822
BsiHKAI GWGCWC 1 cut(s) 301
BsiHKCI CYCGRG 3 cut(s) 219, 515, 766
BsiSI CCGG 5 cut(s) 6, 428, 516, 546, 702
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 8 cut(s) 157, 486, 516, 517, 600, 766, 767, 824
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 8 cut(s) 5, 132, 165, 225, 443, 521, 545, 604
BsoBI CYCGRG 3 cut(s) 219, 515, 766
Bsp120I GGGCCC 1 cut(s) 602
Bsp1286I GDGCHC 2 cut(s) 301, 606
Bsp143I GATC 4 cut(s) 236, 375, 615, 698
BspANI GGCC 8 cut(s) 5, 132, 165, 225, 443, 521, 545, 604
BspCNI CTCAG 4 cut(s) 35, 152, 306, 863
BspDI ATCGAT 1 cut(s) 822
BspFNI CGCG 1 cut(s) 596
BspLI GGNNCC 8 cut(s) 238, 362, 400, 442, 520, 604, 690, 700
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 5 cut(s) 231, 244, 383, 693, 706
BspT107I GGYRCC 2 cut(s) 360, 398
BsrBI CCGCTC 1 cut(s) 390
BsrFI RCCGGY 3 cut(s) 5, 427, 545
BsrI ACTGG 2 cut(s) 133, 260
BssAI RCCGGY 3 cut(s) 5, 427, 545
BssECI CCNNGG 6 cut(s) 172, 515, 516, 594, 702, 765
BssMI GATC 4 cut(s) 236, 375, 615, 698
BssNI GRCGYC 2 cut(s) 330, 361
Bst2UI CCWGG 2 cut(s) 234, 358
Bst4CI ACNGT 3 cut(s) 403, 465, 675
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 2 cut(s) 330, 361
BstAPI GCANNNNNTGC 2 cut(s) 61, 324
BstBAI YACGTR 1 cut(s) 351
BstC8I GCNNGC 4 cut(s) 368, 429, 547, 551
BstDEI CTNAG 4 cut(s) 22, 139, 293, 850
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 667
BstFNI CGCG 1 cut(s) 596
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 4 cut(s) 239, 378, 618, 701
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 4 cut(s) 236, 375, 615, 698
BstMWI GCNNNNNNNGC 8 cut(s) 52, 61, 186, 324, 353, 367, 396, 440
BstNI CCWGG 2 cut(s) 234, 358
BstSCI CCNGG 5 cut(s) 232, 356, 514, 515, 701
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 1 cut(s) 596
BstV1I GCAGC 6 cut(s) 311, 436, 443, 446, 585, 639
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 3 cut(s) 236, 375, 698
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 3 cut(s) 236, 375, 698
Bsu15I ATCGAT 1 cut(s) 822
BsuRI GGCC 8 cut(s) 5, 132, 165, 225, 443, 521, 545, 604
BsuTUI ATCGAT 1 cut(s) 822
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 667
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 4 cut(s) 368, 429, 547, 551
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 3 cut(s) 5, 427, 545
Cfr13I GGNCC 6 cut(s) 130, 441, 519, 602, 603, 688
Cfr42I CCGCGG 1 cut(s) 597
Cfr9I CCCGGG 1 cut(s) 515
ClaI ATCGAT 1 cut(s) 822
CseI GACGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 683
CviAII CATG 1 cut(s) 458
CviQI GTAC 1 cut(s) 683
DdeI CTNAG 4 cut(s) 22, 139, 293, 850
DinI GGCGCC 1 cut(s) 362
DpnI GATC 4 cut(s) 238, 377, 617, 700
DpnII GATC 4 cut(s) 236, 375, 615, 698
EaeI YGGCCR 2 cut(s) 3, 543
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 606
Eco47I GGWCC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 3 cut(s) 219, 515, 766
EcoO109I RGGNCCY 2 cut(s) 602, 688
EcoRII CCWGG 2 cut(s) 232, 356
EcoT38I GRGCYC 1 cut(s) 606
EgeI GGCGCC 1 cut(s) 362
EheI GGCGCC 1 cut(s) 362
FaeI CATG 1 cut(s) 461
FaiI YATR 6 cut(s) 303, 354, 459, 536, 645, 800
FaqI GGGAC 1 cut(s) 674
FatI CATG 1 cut(s) 457
FauI CCCGC 2 cut(s) 182, 542
FokI GGATG 1 cut(s) 674
FriOI GRGCYC 1 cut(s) 606
GlaI GCGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 8 cut(s) 5, 132, 165, 225, 443, 521, 545, 604
HapII CCGG 5 cut(s) 6, 428, 516, 546, 702
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 363
Hin1I GRCGYC 2 cut(s) 330, 361
Hin1II CATG 1 cut(s) 461
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 2 cut(s) 126, 591
HindII GTYRAC 2 cut(s) 126, 591
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 1 cut(s) 95
HpaII CCGG 5 cut(s) 6, 428, 516, 546, 702
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 6 cut(s) 40, 126, 230, 591, 630, 863
Hpy188I TCNGA 4 cut(s) 100, 176, 296, 872
Hpy188III TCNNGA 4 cut(s) 141, 195, 308, 755
Hpy8I GTNNAC 6 cut(s) 40, 126, 230, 591, 630, 863
Hpy99I CGWCG 3 cut(s) 216, 332, 347
HpyCH4III ACNGT 3 cut(s) 403, 465, 675
HpyCH4IV ACGT 3 cut(s) 36, 330, 350
HpyCH4V TGCA 5 cut(s) 64, 110, 284, 679, 802
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 61, 186, 324, 353, 367, 396, 440
HpyF3I CTNAG 4 cut(s) 22, 139, 293, 850
HpySE526I ACGT 3 cut(s) 36, 330, 350
Hsp92I GRCGYC 2 cut(s) 330, 361
Hsp92II CATG 1 cut(s) 461
HspAI GCGC 1 cut(s) 361
KasI GGCGCC 1 cut(s) 360
KroI GCCGGC 2 cut(s) 427, 545
KroNI GCCGGC 2 cut(s) 429, 547
KspI CCGCGG 1 cut(s) 597
Kzo9I GATC 4 cut(s) 236, 375, 615, 698
Lsp1109I GCAGC 6 cut(s) 311, 436, 443, 446, 585, 639
LweI GCATC 2 cut(s) 97, 189
MaeII ACGT 3 cut(s) 36, 330, 350
MaeIII GTNAC 3 cut(s) 403, 412, 448
MalI GATC 4 cut(s) 238, 377, 617, 700
MbiI CCGCTC 1 cut(s) 390
MboI GATC 4 cut(s) 236, 375, 615, 698
MboII GAAGA 3 cut(s) 113, 677, 772
MflI RGATCY 3 cut(s) 236, 375, 698
MhlI GDGCHC 2 cut(s) 301, 606
MluCI AATT 1 cut(s) 784
Mly113I GGCGCC 1 cut(s) 361
MmeI TCCRAC 2 cut(s) 94, 718
MroNI GCCGGC 2 cut(s) 427, 545
MslI CAYNNNNRTG 2 cut(s) 159, 410
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 5 cut(s) 6, 428, 516, 546, 702
MspR9I CCNGG 5 cut(s) 234, 358, 516, 517, 703
MvaI CCWGG 2 cut(s) 234, 358
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 8 cut(s) 52, 61, 186, 324, 353, 367, 396, 440
NaeI GCCGGC 2 cut(s) 429, 547
NarI GGCGCC 1 cut(s) 361
NciI CCSGG 3 cut(s) 516, 517, 703
NdeII GATC 4 cut(s) 236, 375, 615, 698
NgoMIV GCCGGC 2 cut(s) 427, 545
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 8 cut(s) 238, 362, 400, 442, 520, 604, 690, 700
NmuCI GTSAC 2 cut(s) 403, 412
OliI CACNNNNGTG 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 219
PcsI WCGNNNNNNNCGW 3 cut(s) 217, 327, 573
PdiI GCCGGC 2 cut(s) 429, 547
PfeI GAWTC 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 824
PluTI GGCGCC 1 cut(s) 364
Ppu21I YACGTR 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 2 cut(s) 232, 356
PspGI CCWGG 2 cut(s) 232, 356
PspN4I GGNNCC 8 cut(s) 238, 362, 400, 442, 520, 604, 690, 700
PspOMI GGGCCC 1 cut(s) 602
PspPI GGNCC 6 cut(s) 130, 441, 519, 602, 603, 688
PspPPI RGGWCCY 1 cut(s) 688
PspXI VCTCGAGB 1 cut(s) 219
PsuI RGATCY 3 cut(s) 236, 375, 698
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 1 cut(s) 684
RsaNI GTAC 1 cut(s) 683
RseI CAYNNNNRTG 2 cut(s) 159, 410
SacII CCGCGG 1 cut(s) 597
Sau3AI GATC 4 cut(s) 236, 375, 615, 698
Sau96I GGNCC 6 cut(s) 130, 441, 519, 602, 603, 688
ScrFI CCNGG 5 cut(s) 234, 358, 516, 517, 703
SduI GDGCHC 2 cut(s) 301, 606
SfaNI GCATC 2 cut(s) 97, 189
SfoI GGCGCC 1 cut(s) 362
Sfr274I CTCGAG 1 cut(s) 219
Sfr303I CCGCGG 1 cut(s) 597
SgrBI CCGCGG 1 cut(s) 597
SinI GGWCC 1 cut(s) 688
SlaI CTCGAG 1 cut(s) 219
SmaI CCCGGG 1 cut(s) 517
SmiMI CAYNNNNRTG 2 cut(s) 159, 410
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 1 cut(s) 784
SspDI GGCGCC 1 cut(s) 360
StyD4I CCNGG 5 cut(s) 232, 356, 514, 515, 701
TaaI ACNGT 3 cut(s) 403, 465, 675
TaiI ACGT 3 cut(s) 39, 333, 353
TaqI TCGA 3 cut(s) 168, 220, 822
TasI AATT 1 cut(s) 784
TatI WGTACW 1 cut(s) 682
TauI GCSGC 5 cut(s) 366, 424, 599, 720, 723
TfiI GAWTC 1 cut(s) 95
TseFI GTSAC 2 cut(s) 403, 412
TseI GCWGC 6 cut(s) 324, 424, 431, 434, 573, 652
Tsp45I GTSAC 2 cut(s) 403, 412
TspDTI ATGAA 2 cut(s) 446, 678
TspMI CCCGGG 1 cut(s) 515
Tth111I GACNNNGTC 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 824
VpaK11BI GGWCC 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 2 cut(s) 158, 825
XhoI CTCGAG 1 cut(s) 219
XmaI CCCGGG 1 cut(s) 515
ZraI GACGTC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.