Prupe.5G037400_v2.0.a1

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
4194916 .. 4195767
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G037400.1

Sequence Viewer

Length: 852 bp
ATGGCTGGTTTGGATTTAGGCTCAGCTCCTCGCTACGTTCACCAGCTTCACAGGCAAGACTTGCACCTCCAACAACAACAACAAACCGACTCTGAAGACGATGCAGTAGTCAACAGGTCAACCGGCCAGTTCTCCGCGGAAGATCATCACCAGGGCCTTGACCTCGGGGGCATCAACCCCGGGTCAGGAGACATCGTGGCCCGACGGCCCCGAGGTCGTCCTCCTGGATCCAAAAACAAGCCTAAGCCCCCAGTCATCATCACAAGAGAAAGCGCCAACACTCTCCGAGCACATATTCTCGAGGTAGGCAACGGCTGCGATGTATTCGACTGCGTCGCCACGTACGCGCGGCGCCGACAGCGTGGGATCTGTATTTTGAGCGGCAGCGGAACGGTCACCAATGTAAGCCTGCGGCAGCCGGCCGCAGCAGGCTCCGTAGTAACCCTTCATGGAAGGTTCGAGATTTTGTCCCTTTCAGGCTCATTTTTGCCCCCGCCGGCCCCTCCCGGCGCCACGAGCTTGACCATATTCTTGGCCGGCGTGCAAGGGCAGGTGGTCGGGGGCAGCGTGGTCGGTGAGTTGACCGCCGCAGGCCCCGTTATTGTGATCGCCTCCTCGTTTACTAATGTTGCTTATGAGAGGCTGCCTTTGGATGAAGAGGAGCAGTTGCAGGTGCAGGTCCCCCAGGGTTCCGGAGGTAGCGGCGGCGGCGGTGTGGGTGTCGGCAACAACCCTTTCCCCGACCCGTCTTCGGGGCTTCCTTTCTTTAATCTTCCATTGAATATGCAGAATGTTCAGCTGCCGATTGATGGGTGGGCTGGAAATAACTCAGGAGGTCGTCCACCATTTTGA

Protein Analysis

284

Amino Acids

29.51

Weight (kDa)

6.15

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17800
fragaria_vesca FvH4_5g21980
malus_domestica MD06G1033400.v1.1 MD16G1275300.v1.1
prunus_persica Prupe.5G037400_v2.0.a1
pyrus_communis pycom06g02760
rosa_chinensis RchiOBHm_Chr7g0209481
rosa_laevigata RLG00000003125
rosa_multiflora Rmu_ssc0000323.1_g000015
rosa_roxburghii Rroxscaffold_3G00249350
rosa_rugosa Rorug07G0113700
rosa_samantha Rh7AG247800 Rh7BG242400 Rh7CG263300 Rh7DG253700
rosa_wichuraiana Rw7G020910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 541, 661
Acc36I ACCTGC 3 cut(s) 541, 661, 667
AccB1I GGYRCC 2 cut(s) 351, 509
AccBSI CCGCTC 1 cut(s) 381
AccII CGCG 3 cut(s) 137, 347, 349
AccIII TCCGGA 1 cut(s) 692
AclWI GGATC 3 cut(s) 222, 235, 374
AcoI YGGCCR 3 cut(s) 124, 420, 534
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 2 cut(s) 352, 510
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 4 cut(s) 185, 751, 752, 809
AgsI TTSAA 1 cut(s) 781
AjnI CCWGG 3 cut(s) 150, 223, 684
AluBI AGCT 4 cut(s) 26, 46, 519, 799
AluI AGCT 4 cut(s) 26, 46, 519, 799
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 3 cut(s) 222, 235, 374
Ama87I CYCGRG 4 cut(s) 164, 179, 210, 299
Aor13HI TCCGGA 1 cut(s) 692
AoxI GGCC 8 cut(s) 124, 154, 198, 206, 420, 498, 534, 592
ApeKI GCWGC 7 cut(s) 315, 384, 415, 425, 564, 643, 799
AspLEI GCGC 4 cut(s) 275, 349, 354, 512
AspS9I GGNCC 6 cut(s) 154, 199, 207, 499, 593, 679
AsuC2I CCSGG 3 cut(s) 180, 181, 507
AsuHPI GGTGA 4 cut(s) 32, 140, 388, 587
AvaI CYCGRG 4 cut(s) 164, 179, 210, 299
AvaII GGWCC 1 cut(s) 679
BamHI GGATCC 1 cut(s) 227
BanI GGYRCC 2 cut(s) 351, 509
BarI GAAGNNNNNNTAC 2 cut(s) 429, 461
BauI CACGAG 1 cut(s) 514
BbsI GAAGAC 2 cut(s) 102, 741
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 7 cut(s) 302, 396, 427, 437, 576, 630, 786
BccI CCATC 1 cut(s) 803
BceAI ACGGC 2 cut(s) 221, 328
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 3 cut(s) 152, 225, 686
BcnI CCSGG 3 cut(s) 180, 181, 507
BcoDI GTCTC 1 cut(s) 183
BfoI RGCGCY 3 cut(s) 276, 355, 513
BfuAI ACCTGC 3 cut(s) 541, 661, 667
BlpI GCTNAGC 1 cut(s) 22
Bme1390I CCNGG 6 cut(s) 152, 180, 181, 225, 507, 686
Bme18I GGWCC 1 cut(s) 679
BmeT110I CYCGRG 4 cut(s) 164, 179, 210, 299
BmgT120I GGNCC 6 cut(s) 154, 199, 207, 499, 593, 679
BmiI GGNNCC 9 cut(s) 209, 229, 353, 433, 501, 511, 595, 681, 691
BmrFI CCNGG 6 cut(s) 152, 180, 181, 225, 507, 686
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 2 cut(s) 91, 180
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 2 cut(s) 102, 741
Bpu10I CCTNAGC 1 cut(s) 243
Bpu1102I GCTNAGC 1 cut(s) 22
BpuMI CCSGG 3 cut(s) 180, 181, 507
BsaAI YACGTR 1 cut(s) 342
BsaHI GRCGYC 2 cut(s) 352, 510
BsaJI CCNNGG 8 cut(s) 135, 151, 163, 178, 179, 211, 684, 685
BsaWI WCCGGW 1 cut(s) 692
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bsc4I CCNNNNNNNGG 4 cut(s) 185, 751, 752, 809
Bse118I RCCGGY 4 cut(s) 122, 418, 496, 536
Bse1I ACTGG 2 cut(s) 127, 251
BseAI TCCGGA 1 cut(s) 692
BseBI CCWGG 3 cut(s) 152, 225, 686
BseDI CCNNGG 8 cut(s) 135, 151, 163, 178, 179, 211, 684, 685
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 4 cut(s) 185, 751, 752, 809
BseMII CTCAG 2 cut(s) 36, 843
BseNI ACTGG 2 cut(s) 127, 251
BseRI GAGGAG 3 cut(s) 18, 604, 674
BseX3I CGGCCG 1 cut(s) 420
BseXI GCAGC 7 cut(s) 302, 396, 427, 437, 576, 630, 786
BsgI GTGCAG 1 cut(s) 695
Bsh1236I CGCG 3 cut(s) 137, 347, 349
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 8 cut(s) 126, 156, 200, 208, 422, 500, 536, 594
BshNI GGYRCC 2 cut(s) 351, 509
BsiEI CGRYCG 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 4 cut(s) 164, 179, 210, 299
BsiSI CCGG 7 cut(s) 123, 180, 419, 497, 507, 537, 693
BsiWI CGTACG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 454, 665
BslI CCNNNNNNNGG 4 cut(s) 185, 751, 752, 809
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 2 cut(s) 454, 665
BsnI GGCC 8 cut(s) 126, 156, 200, 208, 422, 500, 536, 594
BsoBI CYCGRG 4 cut(s) 164, 179, 210, 299
Bsp1286I GDGCHC 1 cut(s) 292
Bsp13I TCCGGA 1 cut(s) 692
Bsp143I GATC 4 cut(s) 142, 227, 366, 606
Bsp1720I GCTNAGC 1 cut(s) 22
BspANI GGCC 8 cut(s) 126, 156, 200, 208, 422, 500, 536, 594
BspCNI CTCAG 2 cut(s) 35, 842
BspEI TCCGGA 1 cut(s) 692
BspFNI CGCG 3 cut(s) 137, 347, 349
BspLI GGNNCC 9 cut(s) 209, 229, 353, 433, 501, 511, 595, 681, 691
BspMI ACCTGC 3 cut(s) 541, 661, 667
BspPI GGATC 3 cut(s) 222, 235, 374
BspT107I GGYRCC 2 cut(s) 351, 509
BsrBI CCGCTC 1 cut(s) 381
BsrFI RCCGGY 4 cut(s) 122, 418, 496, 536
BsrI ACTGG 2 cut(s) 127, 251
BssAI RCCGGY 4 cut(s) 122, 418, 496, 536
BssECI CCNNGG 8 cut(s) 135, 151, 163, 178, 179, 211, 684, 685
BssMI GATC 4 cut(s) 142, 227, 366, 606
BssNI GRCGYC 2 cut(s) 352, 510
BssSI CACGAG 1 cut(s) 514
Bst2BI CACGAG 1 cut(s) 514
Bst2UI CCWGG 3 cut(s) 152, 225, 686
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 651
BstACI GRCGYC 2 cut(s) 352, 510
BstAPI GCANNNNNTGC 2 cut(s) 61, 315
BstBAI YACGTR 1 cut(s) 342
BstC8I GCNNGC 7 cut(s) 410, 420, 430, 498, 538, 542, 592
BstDEI CTNAG 3 cut(s) 22, 243, 829
BstDSI CCRYGG 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 394
BstF5I GGATG 1 cut(s) 658
BstFNI CGCG 3 cut(s) 137, 347, 349
BstH2I RGCGCY 3 cut(s) 276, 355, 513
BstHHI GCGC 4 cut(s) 275, 349, 354, 512
BstKTI GATC 4 cut(s) 145, 230, 369, 609
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 4 cut(s) 142, 227, 366, 606
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 7 cut(s) 52, 61, 315, 344, 358, 516, 708
BstNI CCWGG 3 cut(s) 152, 225, 686
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 6 cut(s) 150, 178, 179, 223, 505, 684
BstUI CGCG 3 cut(s) 137, 347, 349
BstV1I GCAGC 7 cut(s) 302, 396, 427, 437, 576, 630, 786
BstV2I GAAGAC 2 cut(s) 102, 741
BstX2I RGATCY 2 cut(s) 227, 366
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 2 cut(s) 227, 366
BstZI CGGCCG 1 cut(s) 420
BsuRI GGCC 8 cut(s) 126, 156, 200, 208, 422, 500, 536, 594
BtgI CCRYGG 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 658
BveI ACCTGC 3 cut(s) 541, 661, 667
Cac8I GCNNGC 7 cut(s) 410, 420, 430, 498, 538, 542, 592
CfoI GCGC 4 cut(s) 275, 349, 354, 512
Cfr10I RCCGGY 4 cut(s) 122, 418, 496, 536
Cfr13I GGNCC 6 cut(s) 154, 199, 207, 499, 593, 679
Cfr42I CCGCGG 1 cut(s) 138
Cfr9I CCCGGG 1 cut(s) 179
CseI GACGC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 343
CviAII CATG 1 cut(s) 449
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 3 cut(s) 22, 243, 829
DinI GGCGCC 2 cut(s) 353, 511
DpnI GATC 4 cut(s) 144, 229, 368, 608
DpnII GATC 4 cut(s) 142, 227, 366, 606
EaeI YGGCCR 3 cut(s) 124, 420, 534
EagI CGGCCG 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
EclXI CGGCCG 1 cut(s) 420
Eco47I GGWCC 1 cut(s) 679
Eco52I CGGCCG 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 4 cut(s) 164, 179, 210, 299
Eco91I GGTNACC 1 cut(s) 394
EcoO109I RGGNCCY 3 cut(s) 154, 593, 679
EcoO65I GGTNACC 1 cut(s) 394
EcoRII CCWGG 3 cut(s) 150, 223, 684
EgeI GGCGCC 2 cut(s) 353, 511
EheI GGCGCC 2 cut(s) 353, 511
FaeI CATG 1 cut(s) 452
FaiI YATR 5 cut(s) 294, 450, 527, 636, 785
FaqI GGGAC 2 cut(s) 454, 665
FatI CATG 1 cut(s) 448
FauI CCCGC 1 cut(s) 501
FokI GGATG 1 cut(s) 665
GlaI GCGC 4 cut(s) 274, 348, 353, 511
HaeII RGCGCY 3 cut(s) 276, 355, 513
HaeIII GGCC 8 cut(s) 126, 156, 200, 208, 422, 500, 536, 594
HapII CCGG 7 cut(s) 123, 180, 419, 497, 507, 537, 693
HgaI GACGC 1 cut(s) 322
HhaI GCGC 4 cut(s) 275, 349, 354, 512
Hin1I GRCGYC 2 cut(s) 352, 510
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 4 cut(s) 273, 347, 352, 510
HinP1I GCGC 4 cut(s) 273, 347, 352, 510
HincII GTYRAC 3 cut(s) 112, 120, 582
HindII GTYRAC 3 cut(s) 112, 120, 582
HinfI GANTC 1 cut(s) 89
HpaII CCGG 7 cut(s) 123, 180, 419, 497, 507, 537, 693
HphI GGTGA 4 cut(s) 32, 140, 388, 587
Hpy166II GTNNAC 6 cut(s) 40, 112, 120, 582, 621, 842
Hpy188I TCNGA 2 cut(s) 94, 287
Hpy188III TCNNGA 5 cut(s) 186, 299, 460, 693, 831
Hpy8I GTNNAC 6 cut(s) 40, 112, 120, 582, 621, 842
Hpy99I CGWCG 2 cut(s) 207, 338
HpyAV CCTTC 2 cut(s) 447, 455
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 2 cut(s) 36, 341
HpyCH4V TGCA 6 cut(s) 64, 104, 544, 670, 676, 787
HpyF10VI GCNNNNNNNGC 7 cut(s) 52, 61, 315, 344, 358, 516, 708
HpyF3I CTNAG 3 cut(s) 22, 243, 829
HpySE526I ACGT 2 cut(s) 36, 341
Hsp92I GRCGYC 2 cut(s) 352, 510
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 4 cut(s) 273, 347, 352, 510
KasI GGCGCC 2 cut(s) 351, 509
Kpn2I TCCGGA 1 cut(s) 692
KroI GCCGGC 3 cut(s) 418, 496, 536
KroNI GCCGGC 3 cut(s) 420, 498, 538
KspI CCGCGG 1 cut(s) 138
Kzo9I GATC 4 cut(s) 142, 227, 366, 606
LmnI GCTCC 3 cut(s) 31, 437, 661
Lsp1109I GCAGC 7 cut(s) 302, 396, 427, 437, 576, 630, 786
LweI GCATC 2 cut(s) 91, 180
MaeII ACGT 2 cut(s) 36, 341
MaeIII GTNAC 2 cut(s) 394, 439
MalI GATC 4 cut(s) 144, 229, 368, 608
MbiI CCGCTC 1 cut(s) 381
MboI GATC 4 cut(s) 142, 227, 366, 606
MboII GAAGA 5 cut(s) 107, 152, 668, 741, 764
MflI RGATCY 2 cut(s) 227, 366
MhlI GDGCHC 1 cut(s) 292
Mly113I GGCGCC 2 cut(s) 352, 510
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 94
MroI TCCGGA 1 cut(s) 692
MroNI GCCGGC 3 cut(s) 418, 496, 536
MseI TTAA 1 cut(s) 768
MspA1I CMGCKG 3 cut(s) 137, 387, 799
MspI CCGG 7 cut(s) 123, 180, 419, 497, 507, 537, 693
MspR9I CCNGG 6 cut(s) 152, 180, 181, 225, 507, 686
MteI GCGCNGCGC 1 cut(s) 350
MvaI CCWGG 3 cut(s) 152, 225, 686
MvnI CGCG 3 cut(s) 137, 347, 349
MwoI GCNNNNNNNGC 7 cut(s) 52, 61, 315, 344, 358, 516, 708
NaeI GCCGGC 3 cut(s) 420, 498, 538
NarI GGCGCC 2 cut(s) 352, 510
NciI CCSGG 3 cut(s) 180, 181, 507
NdeII GATC 4 cut(s) 142, 227, 366, 606
NgoMIV GCCGGC 3 cut(s) 418, 496, 536
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 9 cut(s) 209, 229, 353, 433, 501, 511, 595, 681, 691
NmuCI GTSAC 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 299
PaqCI CACCTGC 2 cut(s) 541, 661
PasI CCCWGGG 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PdiI GCCGGC 3 cut(s) 420, 498, 538
Pfl23II CGTACG 1 cut(s) 342
PflFI GACNNNGTC 1 cut(s) 332
PfoI TCCNGGA 1 cut(s) 223
PleI GAGTC 1 cut(s) 83
PluTI GGCGCC 2 cut(s) 355, 513
PpsI GAGTC 1 cut(s) 83
Ppu21I YACGTR 1 cut(s) 342
PpuMI RGGWCCY 1 cut(s) 679
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 3 cut(s) 150, 223, 684
PspEI GGTNACC 1 cut(s) 394
PspGI CCWGG 3 cut(s) 150, 223, 684
PspLI CGTACG 1 cut(s) 342
PspN4I GGNNCC 9 cut(s) 209, 229, 353, 433, 501, 511, 595, 681, 691
PspPI GGNCC 6 cut(s) 154, 199, 207, 499, 593, 679
PspPPI RGGWCCY 1 cut(s) 679
PsuI RGATCY 2 cut(s) 227, 366
PsyI GACNNNGTC 1 cut(s) 332
PvuII CAGCTG 1 cut(s) 799
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SacII CCGCGG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 768
Sau3AI GATC 4 cut(s) 142, 227, 366, 606
Sau96I GGNCC 6 cut(s) 154, 199, 207, 499, 593, 679
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 6 cut(s) 152, 180, 181, 225, 507, 686
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 2 cut(s) 91, 180
SfoI GGCGCC 2 cut(s) 353, 511
Sfr274I CTCGAG 1 cut(s) 299
Sfr303I CCGCGG 1 cut(s) 138
SgrBI CCGCGG 1 cut(s) 138
SinI GGWCC 1 cut(s) 679
SlaI CTCGAG 1 cut(s) 299
SmaI CCCGGG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SspDI GGCGCC 2 cut(s) 351, 509
StyD4I CCNGG 6 cut(s) 150, 178, 179, 223, 505, 684
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 2 cut(s) 39, 344
TaqI TCGA 3 cut(s) 300, 327, 459
TauI GCSGC 8 cut(s) 352, 384, 415, 425, 590, 705, 708, 711
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 7 cut(s) 315, 384, 415, 425, 564, 643, 799
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 437, 669
TspGWI ACGGA 1 cut(s) 424
TspMI CCCGGG 1 cut(s) 179
Tth111I GACNNNGTC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 679
XhoI CTCGAG 1 cut(s) 299
XmaI CCCGGG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.