AT4G17970

malate transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
9975365 .. 9978023
2659 bp
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UTR
Exon/CDS
Intron
AT4G17970.1

Sequence Viewer

Length: 1683 bp
ATGTCCAATAAGGTTCACGTAGGGAGCCTTGAGATGGAGGAAGGTTTGAGCAAGACGAAGTGGATGGTTCTCGAACCTTCTGAAAAGATTAAGAAGATTCCGAAAAGGCTTTGGAATGTCGGAAAAGAAGATCCGAGGAGAGTGATACATGCCCTTAAAGTAGGTCTTTCCTTGACACTCGTTTCTTTGCTATATCTCATGGAGCCTCTCTTCAAAGGCATTGGAAGCAATGCTATTTGGGCAGTCATGACTGTCGTCGTCGTCCTCGAGTTCTCTGCCGGTGCAACGTTGTGCAAAGGGCTTAATAGAGGATTAGGGACACTAATTGCGGGATCTTTGGCATTTTTCATTGAGTTTGTAGCTAATGATTCCGGCAAAGTCCTTCGAGCTATCTTCATTGGCACTGCTGTTTTTATCATTGGAGCGGCTGCTACTTATATAAGATTTATACCATACATAAAGAAGAATTACGATTACGGTGTTGTGATATTTCTCTTGACGTTCAATCTTATAACGGTGTCAAGCTATCGAGTAGATAGTGTGATAAACATAGCACACGATAGATTCTACACTATAGCCGTTGGTTGCGGAATCTGTCTTTTCATGAGCCTTCTTGTTTTTCCTATTTGGTCTGGTGAAGATCTACACAAGACCACCGTTGGTAAACTCCAAGGCCTCTCTCGCTCTATAGAAGCATGTGTGGATGAGTACTTTGAGGAGAAAGAGAAAGAAAAAACAGATTCAAAAGACAGAATCTACGAAGGGTATCAAGCTGTTTTGGATTCTAAATCTACTGACGAAACACTTGCATTATATGCAAATTGGGAACCAAGACACACTCTACGTTGTCATAGATTTCCATGTCAACAATATGTTAAAGTTGGAGCTGTTCTTCGTCAATTTGGTTACACTGTTGTTGCTCTTCACGGTTGCTTACAAACTGAGATTCAAACTCCAAGATCCGTTCGCGCGCTTTTTAAAGATCCTTGTGTAAGATTAGCCGGAGAAGTATGCAAAGCTTTGACGGAACTCGCAGATAGCATCTCAAACCACCGTCATTGTTCACCGGAGATTCTATCCGATCATCTCCACGTGGCACTTCAAGATCTTAATTCCGCTATCAAGTCTCAGCCTAAACTCTTCCTTGGCTCTAACCTCCATCGTCACAATAATAAACACCAAAACGGTAGCATTTCCAATAACAAACACCATCAGCGCAACAGTAGTAACAGTGGAAAAGATCTAAACGGCGACGTTTCTCTTCAAAATACCGAAACCGGTACACGTAAAATTACAGAAACCGGTTCACGTCAAGGCCAAAACGGAGCCGTTTCACTTTCAAGCTTTAGGACTGACACGTCAGCTTTAATGGAGTACCGGAGATCGTTCAAGAACAGTAACTCAGAGATGTCGGCGGCGGGAGAGAGGAGGATGTTACGGCCACAGCTGAGCAAAATCGCGGTGATGACGAGTCTCGAATTCTCGGAGGCATTACCGTTCGCGGCGTTTGCGTCGTTGCTAGTGGAAATGGTGGCGAGGCTCGATAATGTAATCGAAGAAGTTGAGGAATTGGGAAGGATCGCAAGTTTTAAGGAGTATGATAACAAGCGAGATCAGACGGCTGACGATGTCCGATGCGAAAACCCGGCGAATGTTACGATCAGTGTCGGTGCCGCGGAATGA

Protein Analysis

560

Amino Acids

62.31

Weight (kDa)

8.49

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 38 - 525 1.7e-196 Aluminium activated malate transporter
FUSC_2 PF13515 76 - 201 7.2e-12 Fusaric acid resistance protein-like
FUSC PF04632 78 - 243 2.2e-07 Fusaric acid resistance protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AasI GACNNNNNNGTC 1 cut(s) 1357
AccB1I GGYRCC 1 cut(s) 1670
AccBSI CCGCTC 1 cut(s) 425
AccII CGCG 5 cut(s) 969, 971, 1460, 1502, 1676
AclI AACGTT 1 cut(s) 287
AclWI GGATC 5 cut(s) 125, 340, 954, 977, 1586
AcoI YGGCCR 1 cut(s) 1439
AcsI RAATTY 1 cut(s) 1478
AcvI CACGTG 1 cut(s) 1093
AfaI GTAC 3 cut(s) 710, 1282, 1376
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 2 cut(s) 1283, 1356
AgeI ACCGGT 2 cut(s) 1277, 1301
AgsI TTSAA 8 cut(s) 214, 505, 744, 950, 1103, 1265, 1341, 1390
AjiI CACGTC 2 cut(s) 1310, 1359
AluBI AGCT 9 cut(s) 362, 389, 525, 773, 887, 1019, 1344, 1364, 1447
AluI AGCT 9 cut(s) 362, 389, 525, 773, 887, 1019, 1344, 1364, 1447
Alw26I GTCTC 2 cut(s) 1131, 1478
AlwI GGATC 5 cut(s) 125, 340, 954, 977, 1586
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 3 cut(s) 673, 1315, 1439
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 1478
AsiGI ACCGGT 2 cut(s) 1277, 1301
AspLEI GCGC 3 cut(s) 971, 973, 1218
AsuC2I CCSGG 1 cut(s) 1646
AsuHPI GGTGA 3 cut(s) 647, 1056, 1474
AvaI CYCGRG 1 cut(s) 266
BanI GGYRCC 1 cut(s) 1670
BbrPI CACGTG 1 cut(s) 1093
BbvI GCAGC 1 cut(s) 415
BccI CCATC 4 cut(s) 28, 58, 1167, 1218
BceAI ACGGC 5 cut(s) 563, 1264, 1313, 1454, 1635
BcgI CGANNNNNNTGC 4 cut(s) 257, 291, 788, 822
BcnI CCSGG 1 cut(s) 1646
BcoDI GTCTC 2 cut(s) 1131, 1478
BfaI CTAG 1 cut(s) 1520
BfmI CTRYAG 2 cut(s) 573, 687
BglII AGATCT 3 cut(s) 640, 1105, 1240
BisI GCNGC 5 cut(s) 426, 429, 1416, 1503, 1674
BlpI GCTNAGC 1 cut(s) 1448
BlsI GCNGC 5 cut(s) 427, 430, 1417, 1504, 1675
BmcAI AGTACT 1 cut(s) 710
Bme1390I CCNGG 1 cut(s) 1646
BmeT110I CYCGRG 1 cut(s) 266
BmgBI CACGTC 2 cut(s) 1310, 1359
BmiI GGNNCC 5 cut(s) 26, 204, 828, 1327, 1672
BmrFI CCNGG 1 cut(s) 1646
BmsI GCATC 2 cut(s) 1050, 1625
BoxI GACNNNNGTC 1 cut(s) 254
Bpu1102I GCTNAGC 1 cut(s) 1448
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 1646
BsaAI YACGTR 3 cut(s) 19, 1093, 1286
BsaJI CCNNGG 4 cut(s) 134, 670, 1144, 1674
BsaWI WCCGGW 4 cut(s) 1066, 1277, 1301, 1377
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 3 cut(s) 278, 1277, 1301
Bse3DI GCAATG 1 cut(s) 235
BseDI CCNNGG 4 cut(s) 134, 670, 1144, 1674
BseGI GGATG 3 cut(s) 69, 709, 1437
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 4 cut(s) 933, 1142, 1416, 1439
BsePI GCGCGC 1 cut(s) 969
BseRI GAGGAG 3 cut(s) 151, 731, 1441
BseXI GCAGC 1 cut(s) 415
Bsh1236I CGCG 5 cut(s) 969, 971, 1460, 1502, 1676
BshFI GGCC 3 cut(s) 675, 1317, 1441
BshNI GGYRCC 1 cut(s) 1670
BshTI ACCGGT 2 cut(s) 1277, 1301
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 8 cut(s) 279, 372, 1002, 1067, 1278, 1302, 1378, 1646
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 1131, 1478
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 3 cut(s) 675, 1317, 1441
BsoBI CYCGRG 1 cut(s) 266
Bsp1720I GCTNAGC 1 cut(s) 1448
BspANI GGCC 3 cut(s) 675, 1317, 1441
BspCNI CTCAG 4 cut(s) 934, 1141, 1415, 1440
BspFNI CGCG 5 cut(s) 969, 971, 1460, 1502, 1676
BspHI TCATGA 2 cut(s) 246, 603
BspLI GGNNCC 5 cut(s) 26, 204, 828, 1327, 1672
BspPI GGATC 5 cut(s) 125, 340, 954, 977, 1586
BspQI GCTCTTC 1 cut(s) 927
BspT107I GGYRCC 1 cut(s) 1670
BsrBI CCGCTC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 3 cut(s) 278, 1277, 1301
BssAI RCCGGY 3 cut(s) 278, 1277, 1301
BssECI CCNNGG 4 cut(s) 134, 670, 1144, 1674
BssHII GCGCGC 1 cut(s) 969
BssT1I CCWWGG 2 cut(s) 670, 1144
Bst6I CTCTTC 4 cut(s) 215, 927, 1145, 1266
BstAPI GCANNNNNTGC 1 cut(s) 815
BstBAI YACGTR 3 cut(s) 19, 1093, 1286
BstC8I GCNNGC 1 cut(s) 971
BstDEI CTNAG 4 cut(s) 942, 1128, 1402, 1448
BstDSI CCRYGG 1 cut(s) 1674
BstF5I GGATG 3 cut(s) 69, 709, 1437
BstFNI CGCG 5 cut(s) 969, 971, 1460, 1502, 1676
BstHHI GCGC 3 cut(s) 971, 973, 1218
BstMAI GTCTC 2 cut(s) 1131, 1478
BstMWI GCNNNNNNNGC 5 cut(s) 225, 239, 681, 815, 1508
BstNSI RCATGY 2 cut(s) 152, 699
BstPAI GACNNNNGTC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 1644
BstSFI CTRYAG 2 cut(s) 573, 687
BstUI CGCG 5 cut(s) 969, 971, 1460, 1502, 1676
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 7 cut(s) 130, 332, 640, 959, 982, 1105, 1240
BstYI RGATCY 7 cut(s) 130, 332, 640, 959, 982, 1105, 1240
BsuRI GGCC 3 cut(s) 675, 1317, 1441
BtgI CCRYGG 1 cut(s) 1674
BtrI CACGTC 2 cut(s) 1310, 1359
BtsCI GGATG 3 cut(s) 69, 709, 1437
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 4 cut(s) 402, 909, 1237, 1669
Cac8I GCNNGC 1 cut(s) 971
CciI TCATGA 2 cut(s) 246, 603
CfoI GCGC 3 cut(s) 971, 973, 1218
Cfr10I RCCGGY 3 cut(s) 278, 1277, 1301
Cfr42I CCGCGG 1 cut(s) 1677
CseI GACGC 1 cut(s) 1500
Csp6I GTAC 3 cut(s) 709, 1281, 1375
CspAI ACCGGT 2 cut(s) 1277, 1301
CspCI CAANNNNNGTGG 2 cut(s) 1040, 1075
CviAII CATG 6 cut(s) 149, 199, 247, 604, 696, 861
CviQI GTAC 3 cut(s) 709, 1281, 1375
DdeI CTNAG 4 cut(s) 942, 1128, 1402, 1448
DraI TTTAAA 1 cut(s) 979
DrdI GACNNNNNNGTC 1 cut(s) 1357
DseDI GACNNNNNNGTC 1 cut(s) 1357
EaeI YGGCCR 1 cut(s) 1439
Eam1104I CTCTTC 4 cut(s) 215, 927, 1145, 1266
EarI CTCTTC 4 cut(s) 215, 927, 1145, 1266
Eco130I CCWWGG 2 cut(s) 670, 1144
Eco147I AGGCCT 1 cut(s) 675
Eco72I CACGTG 1 cut(s) 1093
Eco88I CYCGRG 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 1478
EcoT14I CCWWGG 2 cut(s) 670, 1144
ErhI CCWWGG 2 cut(s) 670, 1144
FaeI CATG 6 cut(s) 152, 202, 250, 607, 699, 864
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 1 cut(s) 331
FatI CATG 6 cut(s) 148, 198, 246, 603, 695, 860
FauI CCCGC 2 cut(s) 322, 1411
Fnu4HI GCNGC 5 cut(s) 426, 429, 1416, 1503, 1674
FokI GGATG 3 cut(s) 76, 716, 1444
Fsp4HI GCNGC 5 cut(s) 426, 429, 1416, 1503, 1674
FspBI CTAG 1 cut(s) 1520
GlaI GCGC 3 cut(s) 970, 972, 1217
GluI GCNGC 5 cut(s) 426, 429, 1416, 1503, 1674
HaeIII GGCC 3 cut(s) 675, 1317, 1441
HapII CCGG 8 cut(s) 279, 372, 1002, 1067, 1278, 1302, 1378, 1646
HgaI GACGC 1 cut(s) 1500
HhaI GCGC 3 cut(s) 971, 973, 1218
Hin1II CATG 6 cut(s) 152, 202, 250, 607, 699, 864
Hin6I GCGC 3 cut(s) 969, 971, 1216
HinP1I GCGC 3 cut(s) 969, 971, 1216
HincII GTYRAC 1 cut(s) 866
HindII GTYRAC 1 cut(s) 866
HindIII AAGCTT 2 cut(s) 1017, 1342
HpaII CCGG 8 cut(s) 279, 372, 1002, 1067, 1278, 1302, 1378, 1646
HphI GGTGA 3 cut(s) 647, 1056, 1474
Hpy166II GTNNAC 6 cut(s) 16, 665, 866, 1064, 1283, 1307
Hpy188I TCNGA 9 cut(s) 82, 102, 122, 135, 1081, 1405, 1486, 1617, 1634
Hpy188III TCNNGA 7 cut(s) 71, 247, 496, 604, 1103, 1390, 1475
Hpy8I GTNNAC 6 cut(s) 16, 665, 866, 1064, 1283, 1307
Hpy99I CGWCG 4 cut(s) 260, 263, 1256, 1516
HpyAV CCTTC 6 cut(s) 35, 87, 392, 620, 755, 1569
HpyCH4IV ACGT 9 cut(s) 18, 287, 500, 844, 1092, 1254, 1285, 1309, 1358
HpyCH4V TGCA 5 cut(s) 284, 294, 809, 818, 1014
HpyF10VI GCNNNNNNNGC 5 cut(s) 225, 239, 681, 815, 1508
HpyF3I CTNAG 4 cut(s) 942, 1128, 1402, 1448
HpySE526I ACGT 9 cut(s) 18, 287, 500, 844, 1092, 1254, 1285, 1309, 1358
Hsp92II CATG 6 cut(s) 152, 202, 250, 607, 699, 864
HspAI GCGC 3 cut(s) 969, 971, 1216
KspI CCGCGG 1 cut(s) 1677
LguI GCTCTTC 1 cut(s) 927
LmnI GCTCC 5 cut(s) 24, 202, 422, 884, 1325
LpnPI CCDG 9 cut(s) 292, 385, 618, 1015, 1080, 1291, 1315, 1391, 1659
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 2 cut(s) 1050, 1625
MaeI CTAG 1 cut(s) 1520
MaeII ACGT 9 cut(s) 18, 287, 500, 844, 1092, 1254, 1285, 1309, 1358
MaeIII GTNAC 6 cut(s) 905, 1163, 1226, 1397, 1434, 1654
MbiI CCGCTC 1 cut(s) 425
MflI RGATCY 7 cut(s) 130, 332, 640, 959, 982, 1105, 1240
MluCI AATT 8 cut(s) 324, 466, 820, 899, 1111, 1290, 1478, 1568
MlyI GAGTC 1 cut(s) 1480
MmeI TCCRAC 2 cut(s) 100, 862
MseI TTAA 8 cut(s) 90, 156, 303, 876, 978, 1110, 1367, 1590
MspA1I CMGCKG 2 cut(s) 1447, 1676
MspI CCGG 8 cut(s) 279, 372, 1002, 1067, 1278, 1302, 1378, 1646
MspR9I CCNGG 1 cut(s) 1646
MvnI CGCG 5 cut(s) 969, 971, 1460, 1502, 1676
MwoI GCNNNNNNNGC 5 cut(s) 225, 239, 681, 815, 1508
NciI CCSGG 1 cut(s) 1646
NlaIII CATG 6 cut(s) 152, 202, 250, 607, 699, 864
NlaIV GGNNCC 5 cut(s) 26, 204, 828, 1327, 1672
NmuCI GTSAC 1 cut(s) 1163
NspI RCATGY 2 cut(s) 152, 699
PaeR7I CTCGAG 1 cut(s) 266
PagI TCATGA 2 cut(s) 246, 603
PauI GCGCGC 1 cut(s) 969
PceI AGGCCT 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 927
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfeI GAWTC 9 cut(s) 97, 368, 564, 591, 740, 753, 782, 946, 1072
PflFI GACNNNGTC 1 cut(s) 1628
PinAI ACCGGT 2 cut(s) 1277, 1301
PkrI GCNGC 5 cut(s) 427, 430, 1417, 1504, 1675
PleI GAGTC 1 cut(s) 1479
PmaCI CACGTG 1 cut(s) 1093
PmlI CACGTG 1 cut(s) 1093
PpsI GAGTC 1 cut(s) 1479
Ppu21I YACGTR 3 cut(s) 19, 1093, 1286
PshAI GACNNNNGTC 1 cut(s) 254
PsiI TTATAA 1 cut(s) 512
Psp1406I AACGTT 1 cut(s) 287
PspCI CACGTG 1 cut(s) 1093
PspN4I GGNNCC 5 cut(s) 26, 204, 828, 1327, 1672
PspXI VCTCGAGB 1 cut(s) 266
PsuI RGATCY 7 cut(s) 130, 332, 640, 959, 982, 1105, 1240
PsyI GACNNNGTC 1 cut(s) 1628
PteI GCGCGC 1 cut(s) 969
PvuII CAGCTG 1 cut(s) 1447
RsaI GTAC 3 cut(s) 710, 1282, 1376
RsaNI GTAC 3 cut(s) 709, 1281, 1375
SacII CCGCGG 1 cut(s) 1677
SapI GCTCTTC 1 cut(s) 927
SaqAI TTAA 8 cut(s) 90, 156, 303, 876, 978, 1110, 1367, 1590
SatI GCNGC 5 cut(s) 426, 429, 1416, 1503, 1674
ScaI AGTACT 1 cut(s) 710
SchI GAGTC 1 cut(s) 1480
ScrFI CCNGG 1 cut(s) 1646
SfaNI GCATC 2 cut(s) 1050, 1625
SfcI CTRYAG 2 cut(s) 573, 687
Sfr274I CTCGAG 1 cut(s) 266
Sfr303I CCGCGG 1 cut(s) 1677
SgrBI CCGCGG 1 cut(s) 1677
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 29, 266
SmoI CTYRAG 2 cut(s) 29, 266
Sse9I AATT 8 cut(s) 324, 466, 820, 899, 1111, 1290, 1478, 1568
SseBI AGGCCT 1 cut(s) 675
SspMI CTAG 1 cut(s) 1520
StuI AGGCCT 1 cut(s) 675
StyD4I CCNGG 1 cut(s) 1644
StyI CCWWGG 2 cut(s) 670, 1144
TaiI ACGT 9 cut(s) 21, 290, 503, 847, 1095, 1257, 1288, 1312, 1361
TaqI TCGA 7 cut(s) 72, 267, 385, 529, 1476, 1542, 1554
TasI AATT 8 cut(s) 324, 466, 820, 899, 1111, 1290, 1478, 1568
TatI WGTACW 1 cut(s) 708
TauI GCSGC 4 cut(s) 428, 1418, 1505, 1676
TfiI GAWTC 9 cut(s) 97, 368, 564, 591, 740, 753, 782, 946, 1072
Tru1I TTAA 8 cut(s) 90, 156, 303, 876, 978, 1110, 1367, 1590
Tru9I TTAA 8 cut(s) 90, 156, 303, 876, 978, 1110, 1367, 1590
TscAI CASTG 4 cut(s) 409, 916, 1237, 1669
TseFI GTSAC 1 cut(s) 1163
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 1163
TspDTI ATGAA 3 cut(s) 337, 385, 592
TspGWI ACGGA 3 cut(s) 952, 1040, 1338
TspRI CASTG 4 cut(s) 409, 916, 1237, 1669
Tth111I GACNNNGTC 1 cut(s) 1628
XapI RAATTY 1 cut(s) 1478
XceI RCATGY 2 cut(s) 152, 699
XhoI CTCGAG 1 cut(s) 266
XspI CTAG 1 cut(s) 1520
ZrmI AGTACT 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.