Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010183

Physical Location & Seq

Genomic Coordinates Forward (+)

38322465 .. 38323068

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0345300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGACAAATCCACAGCAGCGACGGTCCCAATGGAGGATGGTGTGTTTGGCAATGACCACAATACATTCATAAACAGTAACGACATCATCCAATTTTGTTTGATGCAGCCAATATCCACTATTTGCATTTCTATCTACATGAGACACGTATGGTCATTGTTGAAACTAAAGGATAAGGATCACTTGTATGCATTTGTGGATCTTGGACGCATCTCTAATGAAGCTAGAAAGATTGAGGTTCGATCATGTGAACTATCACTTAGATTAGAGTCTACCCAAGTTGATCAGTTAATTCTTGCTCCTTATAATACAGGGAATCATTGGTTATTGGCTGCCATTAATCATTTTACTGCGTTGGGGTGTTACTTCAACCCATTGAGTAACATTAGCATCAATACAGGGATGAAGAAAATCATAGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0012505 GO:0015075 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

141

Amino Acids

15.99

Weight (kDa)

6.17

Isoelectric Point (pI)

30.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0010183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17970
fragaria_vesca	FvH4_5g21690
malus_domestica	MD06G1032000.v1.1 MD16G1276700.v1.1
prunus_persica	Prupe.5G040200_v2.0.a1
pyrus_communis	pycom06g02650
rosa_chinensis	RchiOBHm_Chr7g0209201 RchiOBHm_Chr7g0241571
rosa_laevigata	RLG00000000564 RLG00000003158
rosa_multiflora	Rmu_sc0002268.1_g000019
rosa_roxburghii	Rroxscaffold_3G00218910 Rroxscaffold_3G00249650
rosa_rugosa	Rorug07G0110100 Rorug07G0345300
rosa_samantha	Rh7AG244200 Rh7CG259700 Rh7DG251000 Rh7DG484800
rosa_wichuraiana	Rw7G020710 Rw7G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	186, 207
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	163, 370
AluBI	AGCT	2 cut(s)	224, 421
AluI	AGCT	2 cut(s)	224, 421
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	2 cut(s)	186, 207
ApeKI	GCWGC	3 cut(s)	17, 106, 332
AseI	ATTAAT	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	29, 118, 319
BccI	CCATC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	3 cut(s)	18, 107, 333
BlsI	GCNGC	3 cut(s)	19, 108, 334
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	3 cut(s)	93, 219, 399
BsaAI	YACGTR	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	58
Bse8I	GATNNNNATC	1 cut(s)	177
BseGI	GGATG	3 cut(s)	43, 87, 408
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	58
BseXI	GCAGC	3 cut(s)	29, 118, 319
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	178, 199, 242, 283
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	2 cut(s)	186, 207
BsrDI	GCAATG	1 cut(s)	58
BssMI	GATC	4 cut(s)	178, 199, 242, 283
Bst4CI	ACNGT	2 cut(s)	25, 77
BstBAI	YACGTR	1 cut(s)	148
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	3 cut(s)	43, 87, 408
BstKTI	GATC	4 cut(s)	181, 202, 245, 286
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	4 cut(s)	178, 199, 242, 283
BstV1I	GCAGC	3 cut(s)	29, 118, 319
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	43, 87, 408
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	216
CviAII	CATG	2 cut(s)	139, 246
CviJI	RGCY	4 cut(s)	109, 224, 332, 421
CviKI_1	RGCY	4 cut(s)	109, 224, 332, 421
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	4 cut(s)	180, 201, 244, 285
DpnII	GATC	4 cut(s)	178, 199, 242, 283
Eco47I	GGWCC	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	2 cut(s)	142, 249
FaiI	YATR	7 cut(s)	71, 140, 151, 189, 247, 306, 416
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	2 cut(s)	138, 245
FbaI	TGATCA	1 cut(s)	283
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	3 cut(s)	18, 107, 333
FokI	GGATG	3 cut(s)	50, 74, 415
Fsp4HI	GCNGC	3 cut(s)	18, 107, 333
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	3 cut(s)	18, 107, 333
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	142, 249
HinfI	GANTC	2 cut(s)	269, 316
Hpy166II	GTNNAC	2 cut(s)	251, 273
Hpy8I	GTNNAC	2 cut(s)	251, 273
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	25, 77
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	106, 126, 191
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	142, 249
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	178, 199, 242, 283
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	2 cut(s)	297, 384
Lsp1109I	GCAGC	3 cut(s)	29, 118, 319
LweI	GCATC	3 cut(s)	93, 219, 399
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	3 cut(s)	77, 362, 380
MalI	GATC	4 cut(s)	180, 201, 244, 285
MboI	GATC	4 cut(s)	178, 199, 242, 283
MboII	GAAGA	1 cut(s)	418
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	2 cut(s)	92, 291
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	2 cut(s)	28, 229
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	2 cut(s)	290, 339
MslI	CAYNNNNRTG	1 cut(s)	186
NdeII	GATC	4 cut(s)	178, 199, 242, 283
NlaIII	CATG	2 cut(s)	142, 249
NlaIV	GGNNCC	1 cut(s)	27
NsiI	ATGCAT	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	19, 108, 334
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	290, 339
SatI	GCNGC	3 cut(s)	18, 107, 333
Sau3AI	GATC	4 cut(s)	178, 199, 242, 283
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	278
SetI	ASST	4 cut(s)	150, 226, 240, 423
SfaNI	GCATC	3 cut(s)	93, 219, 399
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	2 cut(s)	92, 291
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	25, 77
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	241
TasI	AATT	2 cut(s)	92, 291
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	2 cut(s)	290, 339
Tru9I	TTAA	2 cut(s)	290, 339
TseI	GCWGC	3 cut(s)	17, 106, 332
TspDTI	ATGAA	3 cut(s)	58, 234, 419
VpaK11BI	GGWCC	1 cut(s)	25
VspI	ATTAAT	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.