FvH4_5g21690

malate transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
13096418 .. 13099324
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21690.t1

Sequence Viewer

Length: 1629 bp
ATGTTTCCCAAAGTTCATGCAGGCATGGATGTGGAAATGAACAGTAACATGGATTGTGGCAAAAGCAAAGGCATCATTGGAGAGAAGAGTTTGCAAATTCTTGTTGACAAGATGAAAAAATACCCGGTTTCGATTTGGAGGACTGTGTGGAAAGTGGGAAGAGAAGATCCAAGAAGAGTGATGCATGCTGCGAAAGTTGGTGTAGCTTTGACACTGGTTTCATTGTTGTATCTGTTGCAGCCACTCTTCACTGGAATTGGACAGAATGCCATTTGGGCTGTCATGACTGTTGTTGTTGTGCTAGAGTTTACCGCAGGGGCAACTTTATGCAAAGGACTCAACAGAGGATTGGGGACACTGTTAGCTGGATCATTGGCATTTTTCATCGAGTACATTGCAACTGAATCTGGTCACGTTTTTCGAGCAATTTTCATTGGAGCTGCAGTTTTCCTGATAGGAGCTGCAGCAACATATATCAGGTTCATTCCTTATATTAGGAAGAACTATGACTATGGAGTTGTCATATTTCTCTTGACCTTCAATCTGATAACTGTGTCAAGCTACCGTGTTGACAATGTCATGAAAATCGCTCATGATCGCTTCTTCACCATCGCTATAGGCTGTGGCGTCTGCCTCGTTATGAGTCTTCTGGTATTTCCAAATTGGTCAGGGGAAGAGCTACATAGTTCCACTGTCTTCAAGCTTGAAGGCCTAGCTAGATCTATTGAAGCTTGTGTGAATGAGTACTTCACTGAACAAGATCAAATAGAAGCAAACAAAGAGAAATCATCAGCTGAGGATCCAATATATCAAGGTTATAAGGCTGTTTTGGACTCAAAATCTTTTGATGAAACAATGGCCTTACATGCAAGTTGGGAACCAAGACACTCGAGGCATTGTTACAGATTTCCATGGCAGCAATATGTCAAACTGGGAAATGTTCTTCGCCATTTCGGGTACACTGTTGTAGCTCTACATGGATGTCTACGAACTGAAATTCAGACGCCAAGATCTGTTAGAGGTCTATTCAAGGACCCCTCCATTAGACTTGCAGGAGAAGTATCAAAAGGACTAATGGAACTTGCCAACAGCATTAGGAATCGCCGCCATTGCTCCCCCGAAATACTCTCTGATCATCTCCATGAAGCCTTACAAGACCTCAACACTGCTATCAAGTCACAACCAAGACTTTTCCTAGGCTCAAACAGCAACCAGGCCACCAACATGCTTGCTCTAGCAGCTGCACACGCCACATCTCAAAAGAACGCAAAGAACTCGTCAGGGGGAGGAGGAGTTTCTTTGTCAAGTGTGAAAACCGATAGCTCTGCATTGATGGAATGGAAATCCAAGAGGGAGTCTTCCGAGAGGAAGTTCCTGAGGCCACAGTTGAGCAAAATTGCGATCACTAGCCTCGAGTTCTCAGAAGCACTTCCTTTCGCTGCCTTTGCTGCTTTGCTGGTGGAGACAGTGGCAAAGCTTGACAATGTGATTGAGGAAGTTGAGGAACTGGGAAGGATTGCAGGCTTCAAAGAGTATGAACATGGTGATGAGAATATTGTTGTTACTAGTGACAAGCCACAAGTGATTGATGTTACTCAAAACCAATTGCCTTCCCATGGTGTGGATTGA

Protein Analysis

543

Amino Acids

60.09

Weight (kDa)

8.28

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALMT PF11744 50 - 504 1.9e-174 Aluminium activated malate transporter
FUSC_2 PF13515 82 - 213 7.2e-13 Fusaric acid resistance protein-like
FUSC PF04632 89 - 249 2.9e-09 Fusaric acid resistance protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 819
AccB7I CCANNNNNTGG 1 cut(s) 1621
AccI GTMKAC 1 cut(s) 985
AciI CCGC 2 cut(s) 312, 1105
AclWI GGATC 4 cut(s) 161, 376, 794, 807
AcsI RAATTY 2 cut(s) 96, 996
AcyI GRCGYC 2 cut(s) 627, 1004
AfaI GTAC 3 cut(s) 392, 746, 959
AfiI CCNNNNNNNGG 2 cut(s) 1616, 1621
AgsI TTSAA 6 cut(s) 541, 700, 707, 728, 1030, 1528
AhlI ACTAGT 1 cut(s) 1565
AjnI CCWGG 1 cut(s) 1212
Alw26I GTCTC 1 cut(s) 1457
AlwI GGATC 4 cut(s) 161, 376, 794, 807
Ama87I CYCGRG 2 cut(s) 889, 1412
AoxI GGCC 4 cut(s) 709, 858, 1215, 1379
ApoI RAATTY 2 cut(s) 96, 996
ArsI GACNNNNNNTTYG 2 cut(s) 1262, 1294
Asp700I GAANNNNTTC 1 cut(s) 1428
AspA2I CCTAGG 1 cut(s) 1195
AspS9I GGNCC 1 cut(s) 1033
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 598, 1556
AvaI CYCGRG 2 cut(s) 889, 1412
AvaII GGWCC 1 cut(s) 1033
AvrII CCTAGG 1 cut(s) 1195
AxyI CCTNAGG 1 cut(s) 1376
BamHI GGATCC 1 cut(s) 799
BbsI GAAGAC 3 cut(s) 638, 688, 1350
BbvCI CCTCAGC 1 cut(s) 795
BccI CCATC 2 cut(s) 617, 1327
BcgI CGANNNNNNTGC 6 cut(s) 377, 411, 1257, 1291, 1307, 1341
BciT130I CCWGG 1 cut(s) 1214
BclI TGATCA 1 cut(s) 1132
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 1457
BcuI ACTAGT 1 cut(s) 1565
BfaI CTAG 7 cut(s) 302, 713, 717, 1196, 1235, 1407, 1566
BfmI CTRYAG 3 cut(s) 441, 462, 615
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 2 cut(s) 719, 1010
BlnI CCTAGG 1 cut(s) 1195
BmcAI AGTACT 1 cut(s) 746
Bme1390I CCNGG 2 cut(s) 125, 1214
Bme18I GGWCC 1 cut(s) 1033
BmeT110I CYCGRG 2 cut(s) 889, 1412
BmgT120I GGNCC 1 cut(s) 1033
BmiI GGNNCC 3 cut(s) 801, 879, 1035
BmrFI CCNGG 2 cut(s) 125, 1214
BmrI ACTGGG 2 cut(s) 941, 1517
BmsI GCATC 2 cut(s) 81, 171
BmuI ACTGGG 2 cut(s) 941, 1517
BpiI GAAGAC 3 cut(s) 638, 688, 1350
Bpu10I CCTNAGC 1 cut(s) 795
BpuMI CCSGG 1 cut(s) 125
BsaHI GRCGYC 2 cut(s) 627, 1004
BsaJI CCNNGG 3 cut(s) 911, 1195, 1615
BsaXI ACNNNNNCTCC 4 cut(s) 429, 459, 1278, 1308
Bsc4I CCNNNNNNNGG 2 cut(s) 1616, 1621
Bse1I ACTGG 4 cut(s) 219, 256, 936, 1512
Bse21I CCTNAGG 1 cut(s) 1376
Bse3DI GCAATG 2 cut(s) 393, 1108
BseBI CCWGG 1 cut(s) 1214
BseDI CCNNGG 3 cut(s) 911, 1195, 1615
BseGI GGATG 2 cut(s) 34, 986
BseLI CCNNNNNNNGG 2 cut(s) 1616, 1621
BseMI GCAATG 2 cut(s) 393, 1108
BseMII CTCAG 3 cut(s) 786, 1367, 1434
BseNI ACTGG 4 cut(s) 219, 256, 936, 1512
BseRI GAGGAG 2 cut(s) 1302, 1305
BsgI GTGCAG 1 cut(s) 1227
BshFI GGCC 4 cut(s) 711, 860, 1217, 1381
BsiHKCI CYCGRG 2 cut(s) 889, 1412
BsiSI CCGG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 1616, 1621
BsmAI GTCTC 1 cut(s) 1457
BsmFI GGGAC 1 cut(s) 367
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 4 cut(s) 711, 860, 1217, 1381
BsoBI CYCGRG 2 cut(s) 889, 1412
Bsp143I GATC 9 cut(s) 166, 368, 595, 719, 760, 799, 1010, 1132, 1401
Bsp19I CCATGG 2 cut(s) 911, 1615
BspACI CCGC 2 cut(s) 312, 1105
BspANI GGCC 4 cut(s) 711, 860, 1217, 1381
BspCNI CTCAG 3 cut(s) 787, 1368, 1433
BspHI TCATGA 3 cut(s) 282, 579, 592
BspLI GGNNCC 3 cut(s) 801, 879, 1035
BspMAI CTGCAG 2 cut(s) 445, 466
BspPI GGATC 4 cut(s) 161, 376, 794, 807
BspQI GCTCTTC 1 cut(s) 669
BsrDI GCAATG 2 cut(s) 393, 1108
BsrI ACTGG 4 cut(s) 219, 256, 936, 1512
BssECI CCNNGG 3 cut(s) 911, 1195, 1615
BssMI GATC 9 cut(s) 166, 368, 595, 719, 760, 799, 1010, 1132, 1401
BssNI GRCGYC 2 cut(s) 627, 1004
BssT1I CCWWGG 3 cut(s) 911, 1195, 1615
Bst2UI CCWGG 1 cut(s) 1214
Bst6I CTCTTC 5 cut(s) 80, 154, 169, 251, 669
BstACI GRCGYC 2 cut(s) 627, 1004
BstC8I GCNNGC 4 cut(s) 22, 186, 1230, 1522
BstDEI CTNAG 3 cut(s) 795, 1376, 1420
BstDSI CCRYGG 2 cut(s) 911, 1615
BstF5I GGATG 2 cut(s) 34, 986
BstKTI GATC 9 cut(s) 169, 371, 598, 722, 763, 802, 1013, 1135, 1404
BstMAI GTCTC 1 cut(s) 1457
BstMBI GATC 9 cut(s) 166, 368, 595, 719, 760, 799, 1010, 1132, 1401
BstMWI GCNNNNNNNGC 8 cut(s) 275, 866, 1110, 1206, 1238, 1247, 1445, 1448
BstNI CCWGG 1 cut(s) 1214
BstNSI RCATGY 3 cut(s) 188, 869, 1228
BstSCI CCNGG 2 cut(s) 123, 1212
BstSFI CTRYAG 3 cut(s) 441, 462, 615
BstV2I GAAGAC 3 cut(s) 638, 688, 1350
BstX2I RGATCY 4 cut(s) 166, 719, 799, 1010
BstYI RGATCY 4 cut(s) 166, 719, 799, 1010
Bsu36I CCTNAGG 1 cut(s) 1376
BsuRI GGCC 4 cut(s) 711, 860, 1217, 1381
BtgI CCRYGG 2 cut(s) 911, 1615
BtgZI GCGATG 1 cut(s) 595
BtsCI GGATG 2 cut(s) 34, 986
BtsI GCAGTG 1 cut(s) 1164
BtsIMutI CAGTG 8 cut(s) 212, 249, 356, 690, 750, 960, 1164, 1473
Cac8I GCNNGC 4 cut(s) 22, 186, 1230, 1522
CciI TCATGA 3 cut(s) 282, 579, 592
Cfr13I GGNCC 1 cut(s) 1033
CseI GACGC 2 cut(s) 616, 1012
Csp6I GTAC 3 cut(s) 391, 745, 958
CviQI GTAC 3 cut(s) 391, 745, 958
DdeI CTNAG 3 cut(s) 795, 1376, 1420
DpnI GATC 9 cut(s) 168, 370, 597, 721, 762, 801, 1012, 1134, 1403
DpnII GATC 9 cut(s) 166, 368, 595, 719, 760, 799, 1010, 1132, 1401
Eam1104I CTCTTC 5 cut(s) 80, 154, 169, 251, 669
EarI CTCTTC 5 cut(s) 80, 154, 169, 251, 669
Eco130I CCWWGG 3 cut(s) 911, 1195, 1615
Eco147I AGGCCT 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 1033
Eco81I CCTNAGG 1 cut(s) 1376
Eco88I CYCGRG 2 cut(s) 889, 1412
EcoO109I RGGNCCY 1 cut(s) 1033
EcoRII CCWGG 1 cut(s) 1212
EcoT14I CCWWGG 3 cut(s) 911, 1195, 1615
EcoT22I ATGCAT 1 cut(s) 186
ErhI CCWWGG 3 cut(s) 911, 1195, 1615
FaqI GGGAC 1 cut(s) 367
FbaI TGATCA 1 cut(s) 1132
FblI GTMKAC 1 cut(s) 985
FokI GGATG 2 cut(s) 41, 993
FspBI CTAG 7 cut(s) 302, 713, 717, 1196, 1235, 1407, 1566
HaeIII GGCC 4 cut(s) 711, 860, 1217, 1381
HapII CCGG 1 cut(s) 125
HgaI GACGC 2 cut(s) 616, 1012
Hin1I GRCGYC 2 cut(s) 627, 1004
HincII GTYRAC 2 cut(s) 106, 571
HindII GTYRAC 2 cut(s) 106, 571
HindIII AAGCTT 3 cut(s) 701, 729, 1475
HinfI GANTC 6 cut(s) 336, 404, 643, 833, 1099, 1355
HpaII CCGG 1 cut(s) 125
HphI GGTGA 2 cut(s) 598, 1556
Hpy166II GTNNAC 5 cut(s) 106, 309, 571, 960, 986
Hpy188I TCNGA 5 cut(s) 546, 1002, 1132, 1363, 1423
Hpy188III TCNNGA 6 cut(s) 283, 451, 532, 580, 593, 1375
Hpy8I GTNNAC 5 cut(s) 106, 309, 571, 960, 986
HpyAV CCTTC 4 cut(s) 547, 701, 1506, 1620
HpyCH4IV ACGT 1 cut(s) 414
HpyF10VI GCNNNNNNNGC 8 cut(s) 275, 866, 1110, 1206, 1238, 1247, 1445, 1448
HpyF3I CTNAG 3 cut(s) 795, 1376, 1420
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 2 cut(s) 627, 1004
Ksp22I TGATCA 1 cut(s) 1132
Kzo9I GATC 9 cut(s) 166, 368, 595, 719, 760, 799, 1010, 1132, 1401
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 3 cut(s) 437, 458, 1118
LweI GCATC 2 cut(s) 81, 171
MaeI CTAG 7 cut(s) 302, 713, 717, 1196, 1235, 1407, 1566
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 7 cut(s) 44, 410, 899, 1176, 1561, 1568, 1591
MalI GATC 9 cut(s) 168, 370, 597, 721, 762, 801, 1012, 1134, 1403
MboI GATC 9 cut(s) 166, 368, 595, 719, 760, 799, 1010, 1132, 1401
MfeI CAATTG 1 cut(s) 1604
MflI RGATCY 4 cut(s) 166, 719, 799, 1010
MluCI AATT 7 cut(s) 96, 255, 426, 661, 996, 1395, 1604
MlyI GAGTC 4 cut(s) 330, 652, 827, 1364
Mph1103I ATGCAT 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 1428
MslI CAYNNNNRTG 4 cut(s) 29, 1140, 1223, 1545
MspA1I CMGCKG 2 cut(s) 794, 1241
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 125, 1214
MunI CAATTG 1 cut(s) 1604
Mva1269I GAATGC 1 cut(s) 271
MvaI CCWGG 1 cut(s) 1214
MwoI GCNNNNNNNGC 8 cut(s) 275, 866, 1110, 1206, 1238, 1247, 1445, 1448
NciI CCSGG 1 cut(s) 125
NcoI CCATGG 2 cut(s) 911, 1615
NdeII GATC 9 cut(s) 166, 368, 595, 719, 760, 799, 1010, 1132, 1401
NlaIV GGNNCC 3 cut(s) 801, 879, 1035
NmuCI GTSAC 3 cut(s) 410, 1176, 1568
NsiI ATGCAT 1 cut(s) 186
NspI RCATGY 3 cut(s) 188, 869, 1228
PaeI GCATGC 1 cut(s) 188
PaeR7I CTCGAG 2 cut(s) 889, 1412
PagI TCATGA 3 cut(s) 282, 579, 592
PceI AGGCCT 1 cut(s) 711
PciSI GCTCTTC 1 cut(s) 669
PctI GAATGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 1428
PfeI GAWTC 2 cut(s) 404, 1099
PflFI GACNNNGTC 1 cut(s) 575
PflMI CCANNNNNTGG 1 cut(s) 1621
PleI GAGTC 4 cut(s) 330, 651, 827, 1363
PpsI GAGTC 4 cut(s) 330, 651, 827, 1363
PpuMI RGGWCCY 1 cut(s) 1033
PsiI TTATAA 1 cut(s) 819
Psp5II RGGWCCY 1 cut(s) 1033
Psp6I CCWGG 1 cut(s) 1212
PspGI CCWGG 1 cut(s) 1212
PspN4I GGNNCC 3 cut(s) 801, 879, 1035
PspPI GGNCC 1 cut(s) 1033
PspPPI RGGWCCY 1 cut(s) 1033
PspXI VCTCGAGB 2 cut(s) 889, 1412
PstI CTGCAG 2 cut(s) 445, 466
PsuI RGATCY 4 cut(s) 166, 719, 799, 1010
PsyI GACNNNGTC 1 cut(s) 575
PvuII CAGCTG 2 cut(s) 794, 1241
RsaI GTAC 3 cut(s) 392, 746, 959
RsaNI GTAC 3 cut(s) 391, 745, 958
RseI CAYNNNNRTG 4 cut(s) 29, 1140, 1223, 1545
SapI GCTCTTC 1 cut(s) 669
Sau3AI GATC 9 cut(s) 166, 368, 595, 719, 760, 799, 1010, 1132, 1401
Sau96I GGNCC 1 cut(s) 1033
ScaI AGTACT 1 cut(s) 746
SchI GAGTC 4 cut(s) 330, 652, 827, 1364
ScrFI CCNGG 2 cut(s) 125, 1214
SfaNI GCATC 2 cut(s) 81, 171
SfcI CTRYAG 3 cut(s) 441, 462, 615
Sfr274I CTCGAG 2 cut(s) 889, 1412
SinI GGWCC 1 cut(s) 1033
SlaI CTCGAG 2 cut(s) 889, 1412
SmiMI CAYNNNNRTG 4 cut(s) 29, 1140, 1223, 1545
SmlI CTYRAG 2 cut(s) 889, 1412
SmoI CTYRAG 2 cut(s) 889, 1412
SpeI ACTAGT 1 cut(s) 1565
SphI GCATGC 1 cut(s) 188
Sse9I AATT 7 cut(s) 96, 255, 426, 661, 996, 1395, 1604
SseBI AGGCCT 1 cut(s) 711
SsiI CCGC 2 cut(s) 312, 1105
SspI AATATT 1 cut(s) 1555
SspMI CTAG 7 cut(s) 302, 713, 717, 1196, 1235, 1407, 1566
StuI AGGCCT 1 cut(s) 711
StyD4I CCNGG 2 cut(s) 123, 1212
StyI CCWWGG 3 cut(s) 911, 1195, 1615
TaiI ACGT 1 cut(s) 417
TaqI TCGA 5 cut(s) 131, 387, 421, 890, 1413
TasI AATT 7 cut(s) 96, 255, 426, 661, 996, 1395, 1604
TatI WGTACW 2 cut(s) 390, 744
TauI GCSGC 1 cut(s) 1107
TfiI GAWTC 2 cut(s) 404, 1099
TscAI CASTG 8 cut(s) 219, 256, 363, 697, 757, 967, 1171, 1473
TseFI GTSAC 3 cut(s) 410, 1176, 1568
Tsp45I GTSAC 3 cut(s) 410, 1176, 1568
TspRI CASTG 8 cut(s) 219, 256, 363, 697, 757, 967, 1171, 1473
Tth111I GACNNNGTC 1 cut(s) 575
Van91I CCANNNNNTGG 1 cut(s) 1621
VpaK11BI GGWCC 1 cut(s) 1033
XapI RAATTY 2 cut(s) 96, 996
XceI RCATGY 3 cut(s) 188, 869, 1228
XhoI CTCGAG 2 cut(s) 889, 1412
XmaJI CCTAGG 1 cut(s) 1195
XmiI GTMKAC 1 cut(s) 985
XmnI GAANNNNTTC 1 cut(s) 1428
XspI CTAG 7 cut(s) 302, 713, 717, 1196, 1235, 1407, 1566
ZrmI AGTACT 1 cut(s) 746
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.