malate transporter
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G17970 |
| fragaria_vesca | FvH4_5g21690 |
| malus_domestica | MD06G1032000.v1.1 MD16G1276700.v1.1 |
| prunus_persica | Prupe.5G040200_v2.0.a1 |
| pyrus_communis | pycom06g02650 |
| rosa_chinensis | RchiOBHm_Chr7g0209201 RchiOBHm_Chr7g0241571 |
| rosa_laevigata | RLG00000000564 RLG00000003158 |
| rosa_multiflora | Rmu_sc0002268.1_g000019 |
| rosa_roxburghii | Rroxscaffold_3G00218910 Rroxscaffold_3G00249650 |
| rosa_rugosa | Rorug07G0110100 Rorug07G0345300 |
| rosa_samantha | Rh7AG244200 Rh7CG259700 Rh7DG251000 Rh7DG484800 |
| rosa_wichuraiana | Rw7G020710 Rw7G042210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 801 |
| AccI | GTMKAC | 2 cut(s) | 558, 634 |
| AccII | CGCG | 1 cut(s) | 555 |
| AccIII | TCCGGA | 1 cut(s) | 761 |
| AciI | CCGC | 4 cut(s) | 230, 553, 901, 1034 |
| AclI | AACGTT | 1 cut(s) | 921 |
| AclWI | GGATC | 4 cut(s) | 364, 454, 776, 789 |
| AcoI | YGGCCR | 1 cut(s) | 247 |
| AcsI | RAATTY | 4 cut(s) | 43, 84, 978, 1340 |
| AcuI | CTGAAG | 3 cut(s) | 590, 721, 1485 |
| AfaI | GTAC | 1 cut(s) | 905 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 163, 1583 |
| AgsI | TTSAA | 8 cut(s) | 181, 529, 678, 695, 716, 1012, 1472, 1498 |
| AjnI | CCWGG | 2 cut(s) | 1194, 1353 |
| Alw21I | GWGCWC | 1 cut(s) | 1006 |
| Alw26I | GTCTC | 3 cut(s) | 759, 1255, 1427 |
| AlwI | GGATC | 4 cut(s) | 364, 454, 776, 789 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 232 |
| Ama87I | CYCGRG | 1 cut(s) | 408 |
| Aor13HI | TCCGGA | 1 cut(s) | 761 |
| AoxI | GGCC | 4 cut(s) | 247, 697, 1197, 1349 |
| ApeKI | GCWGC | 6 cut(s) | 428, 452, 898, 1220, 1223, 1409 |
| ApoI | RAATTY | 4 cut(s) | 43, 84, 978, 1340 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1398 |
| AspA2I | CCTAGG | 1 cut(s) | 1177 |
| AspLEI | GCGC | 1 cut(s) | 844 |
| AspS9I | GGNCC | 3 cut(s) | 154, 1015, 1350 |
| AsuC2I | CCSGG | 1 cut(s) | 114 |
| AsuHPI | GGTGA | 1 cut(s) | 1369 |
| AvaI | CYCGRG | 1 cut(s) | 408 |
| AvaII | GGWCC | 2 cut(s) | 154, 1015 |
| AvrII | CCTAGG | 1 cut(s) | 1177 |
| BalI | TGGCCA | 1 cut(s) | 249 |
| BamHI | GGATCC | 1 cut(s) | 781 |
| BanII | GRGCYC | 1 cut(s) | 1006 |
| Bbv12I | GWGCWC | 1 cut(s) | 1006 |
| BbvI | GCAGC | 6 cut(s) | 415, 464, 910, 1210, 1232, 1396 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 365, 399 |
| BciT130I | CCWGG | 2 cut(s) | 1196, 1355 |
| BciVI | GTATCC | 1 cut(s) | 769 |
| BcnI | CCSGG | 1 cut(s) | 114 |
| BcoDI | GTCTC | 3 cut(s) | 759, 1255, 1427 |
| BfaI | CTAG | 5 cut(s) | 290, 701, 705, 1178, 1377 |
| BfmI | CTRYAG | 4 cut(s) | 300, 429, 450, 883 |
| BfoI | RGCGCY | 1 cut(s) | 845 |
| BfuI | GTATCC | 1 cut(s) | 769 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 263, 936 |
| BglII | AGATCT | 1 cut(s) | 992 |
| BisI | GCNGC | 7 cut(s) | 230, 429, 453, 899, 1221, 1224, 1410 |
| BlnI | CCTAGG | 1 cut(s) | 1177 |
| BlpI | GCTNAGC | 1 cut(s) | 1279 |
| BlsI | GCNGC | 7 cut(s) | 231, 430, 454, 900, 1222, 1225, 1411 |
| Bme1390I | CCNGG | 3 cut(s) | 114, 1196, 1355 |
| Bme18I | GGWCC | 2 cut(s) | 154, 1015 |
| BmeT110I | CYCGRG | 1 cut(s) | 408 |
| BmgT120I | GGNCC | 3 cut(s) | 154, 1015, 1350 |
| BmiI | GGNNCC | 7 cut(s) | 156, 783, 861, 1017, 1183, 1329, 1352 |
| BmrFI | CCNGG | 3 cut(s) | 114, 1196, 1355 |
| BmrI | ACTGGG | 1 cut(s) | 1487 |
| BmsI | GCATC | 2 cut(s) | 733, 953 |
| BmuI | ACTGGG | 1 cut(s) | 1487 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 651, 683, 1094, 1126 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1055 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1279 |
| BpuEI | CTTGAG | 3 cut(s) | 856, 1366, 1403 |
| BpuMI | CCSGG | 1 cut(s) | 114 |
| BsaAI | YACGTR | 1 cut(s) | 907 |
| BsaI | GGTCTC | 1 cut(s) | 759 |
| BsaJI | CCNNGG | 4 cut(s) | 863, 893, 1177, 1353 |
| BsaWI | WCCGGW | 1 cut(s) | 761 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 417, 447 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 163, 1583 |
| Bse1I | ACTGG | 5 cut(s) | 207, 642, 1298, 1482, 1550 |
| Bse3DI | GCAATG | 3 cut(s) | 597, 1090, 1283 |
| BseAI | TCCGGA | 1 cut(s) | 761 |
| BseBI | CCWGG | 2 cut(s) | 1196, 1355 |
| BseDI | CCNNGG | 4 cut(s) | 863, 893, 1177, 1353 |
| BseGI | GGATG | 2 cut(s) | 40, 968 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 163, 1583 |
| BseMI | GCAATG | 3 cut(s) | 597, 1090, 1283 |
| BseMII | CTCAG | 3 cut(s) | 1092, 1293, 1404 |
| BseNI | ACTGG | 5 cut(s) | 207, 642, 1298, 1482, 1550 |
| BseXI | GCAGC | 6 cut(s) | 415, 464, 910, 1210, 1232, 1396 |
| BseYI | CCCAGC | 1 cut(s) | 1019 |
| Bsh1236I | CGCG | 1 cut(s) | 555 |
| BshFI | GGCC | 4 cut(s) | 249, 699, 1199, 1351 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1006 |
| BsiHKCI | CYCGRG | 1 cut(s) | 408 |
| BsiSI | CCGG | 4 cut(s) | 113, 354, 762, 1331 |
| BslFI | GGGAC | 1 cut(s) | 159 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 163, 1583 |
| BsmAI | GTCTC | 3 cut(s) | 759, 1255, 1427 |
| BsmFI | GGGAC | 1 cut(s) | 159 |
| BsmI | GAATGC | 3 cut(s) | 70, 259, 1023 |
| BsnI | GGCC | 4 cut(s) | 249, 699, 1199, 1351 |
| Bso31I | GGTCTC | 1 cut(s) | 759 |
| BsoBI | CYCGRG | 1 cut(s) | 408 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1006 |
| Bsp13I | TCCGGA | 1 cut(s) | 761 |
| Bsp143I | GATC | 5 cut(s) | 356, 446, 781, 992, 1114 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1279 |
| Bsp19I | CCATGG | 1 cut(s) | 893 |
| BspACI | CCGC | 4 cut(s) | 230, 553, 901, 1034 |
| BspANI | GGCC | 4 cut(s) | 249, 699, 1199, 1351 |
| BspCNI | CTCAG | 3 cut(s) | 1093, 1292, 1403 |
| BspEI | TCCGGA | 1 cut(s) | 761 |
| BspFNI | CGCG | 1 cut(s) | 555 |
| BspHI | TCATGA | 1 cut(s) | 270 |
| BspLI | GGNNCC | 7 cut(s) | 156, 783, 861, 1017, 1183, 1329, 1352 |
| BspMAI | CTGCAG | 3 cut(s) | 304, 433, 454 |
| BspPI | GGATC | 4 cut(s) | 364, 454, 776, 789 |
| BspTNI | GGTCTC | 1 cut(s) | 759 |
| BsrDI | GCAATG | 3 cut(s) | 597, 1090, 1283 |
| BsrI | ACTGG | 5 cut(s) | 207, 642, 1298, 1482, 1550 |
| BssECI | CCNNGG | 4 cut(s) | 863, 893, 1177, 1353 |
| BssMI | GATC | 5 cut(s) | 356, 446, 781, 992, 1114 |
| BssT1I | CCWWGG | 3 cut(s) | 863, 893, 1177 |
| Bst2UI | CCWGG | 2 cut(s) | 1196, 1355 |
| Bst4CI | ACNGT | 9 cut(s) | 133, 277, 541, 682, 797, 946, 1085, 1173, 1438 |
| BstBAI | YACGTR | 1 cut(s) | 907 |
| BstC8I | GCNNGC | 5 cut(s) | 22, 623, 1069, 1212, 1492 |
| BstDEI | CTNAG | 4 cut(s) | 1055, 1101, 1279, 1390 |
| BstDSI | CCRYGG | 1 cut(s) | 893 |
| BstF5I | GGATG | 2 cut(s) | 40, 968 |
| BstFNI | CGCG | 1 cut(s) | 555 |
| BstH2I | RGCGCY | 1 cut(s) | 845 |
| BstHHI | GCGC | 1 cut(s) | 844 |
| BstKTI | GATC | 5 cut(s) | 359, 449, 784, 995, 1117 |
| BstMAI | GTCTC | 3 cut(s) | 759, 1255, 1427 |
| BstMBI | GATC | 5 cut(s) | 356, 446, 781, 992, 1114 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 263, 716, 848, 936, 1188, 1220, 1229, 1415 |
| BstNI | CCWGG | 2 cut(s) | 1196, 1355 |
| BstNSI | RCATGY | 3 cut(s) | 851, 1210, 1494 |
| BstSCI | CCNGG | 3 cut(s) | 112, 1194, 1353 |
| BstSFI | CTRYAG | 4 cut(s) | 300, 429, 450, 883 |
| BstUI | CGCG | 1 cut(s) | 555 |
| BstV1I | GCAGC | 6 cut(s) | 415, 464, 910, 1210, 1232, 1396 |
| BstX2I | RGATCY | 3 cut(s) | 446, 781, 992 |
| BstYI | RGATCY | 3 cut(s) | 446, 781, 992 |
| BsuI | GTATCC | 1 cut(s) | 769 |
| BsuRI | GGCC | 4 cut(s) | 249, 699, 1199, 1351 |
| BtgI | CCRYGG | 1 cut(s) | 893 |
| BtgZI | GCGATG | 1 cut(s) | 756 |
| BtsCI | GGATG | 2 cut(s) | 40, 968 |
| BtsI | GCAGTG | 3 cut(s) | 297, 877, 1146 |
| BtsIMutI | CAGTG | 8 cut(s) | 138, 200, 297, 344, 687, 877, 1146, 1557 |
| Cac8I | GCNNGC | 5 cut(s) | 22, 623, 1069, 1212, 1492 |
| CaiI | CAGNNNCTG | 1 cut(s) | 232 |
| CciI | TCATGA | 1 cut(s) | 270 |
| CfoI | GCGC | 1 cut(s) | 844 |
| Cfr13I | GGNCC | 3 cut(s) | 154, 1015, 1350 |
| CseI | GACGC | 1 cut(s) | 544 |
| Csp6I | GTAC | 1 cut(s) | 904 |
| CviQI | GTAC | 1 cut(s) | 904 |
| DdeI | CTNAG | 4 cut(s) | 1055, 1101, 1279, 1390 |
| DpnI | GATC | 5 cut(s) | 358, 448, 783, 994, 1116 |
| DpnII | GATC | 5 cut(s) | 356, 446, 781, 992, 1114 |
| EaeI | YGGCCR | 1 cut(s) | 247 |
| Ecl136II | GAGCTC | 1 cut(s) | 1004 |
| Eco130I | CCWWGG | 3 cut(s) | 863, 893, 1177 |
| Eco147I | AGGCCT | 1 cut(s) | 699 |
| Eco24I | GRGCYC | 1 cut(s) | 1006 |
| Eco31I | GGTCTC | 1 cut(s) | 759 |
| Eco47I | GGWCC | 2 cut(s) | 154, 1015 |
| Eco53kI | GAGCTC | 1 cut(s) | 1004 |
| Eco57I | CTGAAG | 3 cut(s) | 590, 721, 1485 |
| Eco88I | CYCGRG | 1 cut(s) | 408 |
| EcoICRI | GAGCTC | 1 cut(s) | 1004 |
| EcoO109I | RGGNCCY | 3 cut(s) | 154, 1015, 1350 |
| EcoRI | GAATTC | 1 cut(s) | 84 |
| EcoRII | CCWGG | 2 cut(s) | 1194, 1353 |
| EcoT14I | CCWWGG | 3 cut(s) | 863, 893, 1177 |
| EcoT22I | ATGCAT | 1 cut(s) | 968 |
| EcoT38I | GRGCYC | 1 cut(s) | 1006 |
| ErhI | CCWWGG | 3 cut(s) | 863, 893, 1177 |
| FaqI | GGGAC | 1 cut(s) | 159 |
| FauI | CCCGC | 1 cut(s) | 1027 |
| FblI | GTMKAC | 2 cut(s) | 558, 634 |
| Fnu4HI | GCNGC | 7 cut(s) | 230, 429, 453, 899, 1221, 1224, 1410 |
| FokI | GGATG | 2 cut(s) | 47, 975 |
| FriOI | GRGCYC | 1 cut(s) | 1006 |
| Fsp4HI | GCNGC | 7 cut(s) | 230, 429, 453, 899, 1221, 1224, 1410 |
| FspBI | CTAG | 5 cut(s) | 290, 701, 705, 1178, 1377 |
| GlaI | GCGC | 1 cut(s) | 843 |
| GluI | GCNGC | 7 cut(s) | 230, 429, 453, 899, 1221, 1224, 1410 |
| GsaI | CCCAGC | 1 cut(s) | 1023 |
| HaeII | RGCGCY | 1 cut(s) | 845 |
| HaeIII | GGCC | 4 cut(s) | 249, 699, 1199, 1351 |
| HapII | CCGG | 4 cut(s) | 113, 354, 762, 1331 |
| HgaI | GACGC | 1 cut(s) | 544 |
| HhaI | GCGC | 1 cut(s) | 844 |
| Hin6I | GCGC | 1 cut(s) | 842 |
| HinP1I | GCGC | 1 cut(s) | 842 |
| HincII | GTYRAC | 2 cut(s) | 559, 727 |
| HindII | GTYRAC | 2 cut(s) | 559, 727 |
| HindIII | AAGCTT | 4 cut(s) | 689, 717, 1128, 1445 |
| HinfI | GANTC | 5 cut(s) | 324, 631, 815, 1248, 1555 |
| HpaII | CCGG | 4 cut(s) | 113, 354, 762, 1331 |
| HphI | GGTGA | 1 cut(s) | 1369 |
| Hpy166II | GTNNAC | 4 cut(s) | 297, 559, 635, 727 |
| Hpy188I | TCNGA | 5 cut(s) | 402, 425, 984, 1114, 1393 |
| Hpy188III | TCNNGA | 9 cut(s) | 48, 271, 408, 520, 568, 657, 762, 873, 1345 |
| Hpy8I | GTNNAC | 4 cut(s) | 297, 559, 635, 727 |
| Hpy99I | CGWCG | 2 cut(s) | 560, 1089 |
| HpyAV | CCTTC | 6 cut(s) | 133, 156, 535, 689, 1476, 1587 |
| HpyCH4III | ACNGT | 9 cut(s) | 133, 277, 541, 682, 797, 946, 1085, 1173, 1438 |
| HpyCH4IV | ACGT | 2 cut(s) | 906, 921 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 263, 716, 848, 936, 1188, 1220, 1229, 1415 |
| HpyF3I | CTNAG | 4 cut(s) | 1055, 1101, 1279, 1390 |
| HpySE526I | ACGT | 2 cut(s) | 906, 921 |
| HspAI | GCGC | 1 cut(s) | 842 |
| Kpn2I | TCCGGA | 1 cut(s) | 761 |
| Kzo9I | GATC | 5 cut(s) | 356, 446, 781, 992, 1114 |
| LmnI | GCTCC | 5 cut(s) | 425, 672, 1100, 1187, 1327 |
| Lsp1109I | GCAGC | 6 cut(s) | 415, 464, 910, 1210, 1232, 1396 |
| LweI | GCATC | 2 cut(s) | 733, 953 |
| MaeI | CTAG | 5 cut(s) | 290, 701, 705, 1178, 1377 |
| MaeII | ACGT | 2 cut(s) | 906, 921 |
| MaeIII | GTNAC | 1 cut(s) | 1531 |
| MalI | GATC | 5 cut(s) | 358, 448, 783, 994, 1116 |
| MboI | GATC | 5 cut(s) | 356, 446, 781, 992, 1114 |
| MboII | GAAGA | 4 cut(s) | 499, 583, 917, 1484 |
| MflI | RGATCY | 3 cut(s) | 446, 781, 992 |
| MhlI | GDGCHC | 1 cut(s) | 1006 |
| MlsI | TGGCCA | 1 cut(s) | 249 |
| MluCI | AATT | 9 cut(s) | 43, 84, 243, 504, 649, 673, 978, 1340, 1365 |
| MluNI | TGGCCA | 1 cut(s) | 249 |
| MlyI | GAGTC | 4 cut(s) | 318, 640, 809, 1257 |
| MmeI | TCCRAC | 2 cut(s) | 220, 1209 |
| MnlI | CCTC | 9 cut(s) | 96, 145, 326, 459, 772, 1299, 1329, 1341, 1513 |
| Mox20I | TGGCCA | 1 cut(s) | 249 |
| Mph1103I | ATGCAT | 1 cut(s) | 968 |
| MroI | TCCGGA | 1 cut(s) | 761 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1398 |
| MscI | TGGCCA | 1 cut(s) | 249 |
| MseI | TTAA | 2 cut(s) | 687, 1143 |
| MslI | CAYNNNNRTG | 4 cut(s) | 29, 275, 1122, 1205 |
| Msp20I | TGGCCA | 1 cut(s) | 249 |
| MspA1I | CMGCKG | 3 cut(s) | 232, 901, 1223 |
| MspI | CCGG | 4 cut(s) | 113, 354, 762, 1331 |
| MspR9I | CCNGG | 3 cut(s) | 114, 1196, 1355 |
| Mva1269I | GAATGC | 3 cut(s) | 70, 259, 1023 |
| MvaI | CCWGG | 2 cut(s) | 1196, 1355 |
| MvnI | CGCG | 1 cut(s) | 555 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 263, 716, 848, 936, 1188, 1220, 1229, 1415 |
| NciI | CCSGG | 1 cut(s) | 114 |
| NcoI | CCATGG | 1 cut(s) | 893 |
| NdeII | GATC | 5 cut(s) | 356, 446, 781, 992, 1114 |
| NlaIV | GGNNCC | 7 cut(s) | 156, 783, 861, 1017, 1183, 1329, 1352 |
| NmuCI | GTSAC | 1 cut(s) | 1531 |
| NsiI | ATGCAT | 1 cut(s) | 968 |
| NspI | RCATGY | 3 cut(s) | 851, 1210, 1494 |
| PaeI | GCATGC | 1 cut(s) | 1494 |
| PaeR7I | CTCGAG | 1 cut(s) | 408 |
| PagI | TCATGA | 1 cut(s) | 270 |
| PceI | AGGCCT | 1 cut(s) | 699 |
| PctI | GAATGC | 3 cut(s) | 70, 259, 1023 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1398 |
| PfeI | GAWTC | 1 cut(s) | 1555 |
| PflFI | GACNNNGTC | 1 cut(s) | 563 |
| PkrI | GCNGC | 7 cut(s) | 231, 430, 454, 900, 1222, 1225, 1411 |
| PleI | GAGTC | 4 cut(s) | 318, 639, 809, 1256 |
| PpsI | GAGTC | 4 cut(s) | 318, 639, 809, 1256 |
| Ppu21I | YACGTR | 1 cut(s) | 907 |
| PpuMI | RGGWCCY | 2 cut(s) | 154, 1015 |
| PsiI | TTATAA | 1 cut(s) | 801 |
| Psp124BI | GAGCTC | 1 cut(s) | 1006 |
| Psp1406I | AACGTT | 1 cut(s) | 921 |
| Psp5II | RGGWCCY | 2 cut(s) | 154, 1015 |
| Psp6I | CCWGG | 2 cut(s) | 1194, 1353 |
| PspFI | CCCAGC | 1 cut(s) | 1019 |
| PspGI | CCWGG | 2 cut(s) | 1194, 1353 |
| PspN4I | GGNNCC | 7 cut(s) | 156, 783, 861, 1017, 1183, 1329, 1352 |
| PspPI | GGNCC | 3 cut(s) | 154, 1015, 1350 |
| PspPPI | RGGWCCY | 2 cut(s) | 154, 1015 |
| PstI | CTGCAG | 3 cut(s) | 304, 433, 454 |
| PstNI | CAGNNNCTG | 1 cut(s) | 232 |
| PsuI | RGATCY | 3 cut(s) | 446, 781, 992 |
| PsyI | GACNNNGTC | 1 cut(s) | 563 |
| PvuII | CAGCTG | 1 cut(s) | 1223 |
| RsaI | GTAC | 1 cut(s) | 905 |
| RsaNI | GTAC | 1 cut(s) | 904 |
| RseI | CAYNNNNRTG | 4 cut(s) | 29, 275, 1122, 1205 |
| SacI | GAGCTC | 1 cut(s) | 1006 |
| SalI | GTCGAC | 1 cut(s) | 557 |
| SaqAI | TTAA | 2 cut(s) | 687, 1143 |
| SatI | GCNGC | 7 cut(s) | 230, 429, 453, 899, 1221, 1224, 1410 |
| Sau3AI | GATC | 5 cut(s) | 356, 446, 781, 992, 1114 |
| Sau96I | GGNCC | 3 cut(s) | 154, 1015, 1350 |
| SchI | GAGTC | 4 cut(s) | 318, 640, 809, 1257 |
| ScrFI | CCNGG | 3 cut(s) | 114, 1196, 1355 |
| SduI | GDGCHC | 1 cut(s) | 1006 |
| SfaNI | GCATC | 2 cut(s) | 733, 953 |
| SfcI | CTRYAG | 4 cut(s) | 300, 429, 450, 883 |
| Sfr274I | CTCGAG | 1 cut(s) | 408 |
| SinI | GGWCC | 2 cut(s) | 154, 1015 |
| SlaI | CTCGAG | 1 cut(s) | 408 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 29, 275, 1122, 1205 |
| SmlI | CTYRAG | 4 cut(s) | 408, 871, 1345, 1382 |
| SmoI | CTYRAG | 4 cut(s) | 408, 871, 1345, 1382 |
| SphI | GCATGC | 1 cut(s) | 1494 |
| Sse9I | AATT | 9 cut(s) | 43, 84, 243, 504, 649, 673, 978, 1340, 1365 |
| SseBI | AGGCCT | 1 cut(s) | 699 |
| SsiI | CCGC | 4 cut(s) | 230, 553, 901, 1034 |
| SspMI | CTAG | 5 cut(s) | 290, 701, 705, 1178, 1377 |
| SstI | GAGCTC | 1 cut(s) | 1006 |
| StuI | AGGCCT | 1 cut(s) | 699 |
| StyD4I | CCNGG | 3 cut(s) | 112, 1194, 1353 |
| StyI | CCWWGG | 3 cut(s) | 863, 893, 1177 |
| TaaI | ACNGT | 9 cut(s) | 133, 277, 541, 682, 797, 946, 1085, 1173, 1438 |
| TaiI | ACGT | 2 cut(s) | 909, 924 |
| TaqI | TCGA | 8 cut(s) | 375, 409, 558, 773, 1027, 1046, 1259, 1290 |
| TasI | AATT | 9 cut(s) | 43, 84, 243, 504, 649, 673, 978, 1340, 1365 |
| TauI | GCSGC | 1 cut(s) | 232 |
| TfiI | GAWTC | 1 cut(s) | 1555 |
| Tru1I | TTAA | 2 cut(s) | 687, 1143 |
| Tru9I | TTAA | 2 cut(s) | 687, 1143 |
| TscAI | CASTG | 8 cut(s) | 138, 207, 304, 351, 687, 884, 1153, 1557 |
| TseFI | GTSAC | 1 cut(s) | 1531 |
| TseI | GCWGC | 6 cut(s) | 428, 452, 898, 1220, 1223, 1409 |
| Tsp45I | GTSAC | 1 cut(s) | 1531 |
| TspDTI | ATGAA | 4 cut(s) | 5, 361, 409, 1140 |
| TspRI | CASTG | 8 cut(s) | 138, 207, 304, 351, 687, 884, 1153, 1557 |
| Tth111I | GACNNNGTC | 1 cut(s) | 563 |
| VpaK11BI | GGWCC | 2 cut(s) | 154, 1015 |
| XapI | RAATTY | 4 cut(s) | 43, 84, 978, 1340 |
| XceI | RCATGY | 3 cut(s) | 851, 1210, 1494 |
| XhoI | CTCGAG | 1 cut(s) | 408 |
| XmaJI | CCTAGG | 1 cut(s) | 1177 |
| XmiI | GTMKAC | 2 cut(s) | 558, 634 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1398 |
| XspI | CTAG | 5 cut(s) | 290, 701, 705, 1178, 1377 |
| Zsp2I | ATGCAT | 1 cut(s) | 968 |