AT4G18590

Replication protein A 14 kDa subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013004
Physical Location & Seq
Forward (+)
10236161 .. 10237268
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18590.1

Sequence Viewer

Length: 321 bp
ATGGATACATCAAGTCCTGCTGCTTTTGTGAATGGAGCTTTGTTGAGAAGGTACATTGGTCAGAAAGTGAGAGCAGTGATTCAAGTTATCAGATCAGATGTTGGATCAGTGATTGGTAAATCGACTGATGATCAACAGATTGTTGTTAAAGGTTCTCCTCAACCGCCTTTAACTACTTACCTTGAGGTAATTGGAATTGCTGAGACTGACAACACTATTCGTGCTGAAGTTTGGACCAACTTTGGTGATAGTTTCGATGTGCAAAACTACAATGAGCTATGTAAGCTTGCAAATGGTGAGTTTAGACACTTGTTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
Rep_fac-A_3

Protein Analysis

106

Amino Acids

11.72

Weight (kDa)

5.23

Isoelectric Point (pI)

27.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rep_fac-A_3 PF08661 1 - 101 4.9e-25 Replication factor A protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52630 AT3G52630 AT4G18590
fragaria_vesca FvH4_6g18910
malus_domestica MD12G1025300.v1.1 MD14G1024000.v1.1
prunus_persica Prupe.7G108800_v2.0.a1
pyrus_communis pycom12g02480
rosa_chinensis RchiOBHm_Chr3g0473901
rosa_laevigata RLG00000023972
rosa_multiflora Rmu_sc0002414.1_g000040
rosa_roxburghii Rroxscaffold_6G00407670
rosa_rugosa Rorug03G0136800
rosa_samantha Rh3AG187000 Rh3BG215600 Rh3CG212300 Rh3DG211500
rosa_wichuraiana Rw3G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AclWI GGATC 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 53
AgsI TTSAA 1 cut(s) 83
AluBI AGCT 3 cut(s) 38, 277, 286
AluI AGCT 3 cut(s) 38, 277, 286
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 257, 308
AvaII GGWCC 1 cut(s) 234
BaeI ACNNNNGTAYC 2 cut(s) 43, 76
BbvI GCAGC 1 cut(s) 7
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 197
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 197
Bsp143I GATC 3 cut(s) 92, 104, 130
BspACI CCGC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 112
BssMI GATC 3 cut(s) 92, 104, 130
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 201
BstKTI GATC 3 cut(s) 95, 107, 133
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 3 cut(s) 92, 104, 130
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 81, 114
Cac8I GCNNGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 52
CviJI RGCY 3 cut(s) 38, 277, 286
CviKI_1 RGCY 3 cut(s) 38, 277, 286
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 201
DpnI GATC 3 cut(s) 94, 106, 132
DpnII GATC 3 cut(s) 92, 104, 130
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 246
FaiI YATR 1 cut(s) 280
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 1 cut(s) 79
HphI GGTGA 2 cut(s) 257, 308
Hpy188I TCNGA 3 cut(s) 63, 92, 97
HpyAV CCTTC 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 262, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 201
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 92, 104, 130
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 1 cut(s) 30
Lsp1109I GCAGC 1 cut(s) 7
MalI GATC 3 cut(s) 94, 106, 132
MboI GATC 3 cut(s) 92, 104, 130
MluCI AATT 2 cut(s) 189, 195
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 2 cut(s) 168, 178
MseI TTAA 2 cut(s) 147, 170
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 3 cut(s) 92, 104, 130
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 147, 170
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 3 cut(s) 92, 104, 130
Sau96I GGNCC 1 cut(s) 234
SetI ASST 7 cut(s) 40, 53, 154, 183, 189, 279, 288
SgeI CNNG 6 cut(s) 24, 29, 95, 194, 233, 299
SinI GGWCC 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 189, 195
SsiI CCGC 1 cut(s) 164
TaqI TCGA 2 cut(s) 122, 255
TasI AATT 2 cut(s) 189, 195
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 147, 170
Tru9I TTAA 2 cut(s) 147, 170
TscAI CASTG 2 cut(s) 81, 114
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 304
TspRI CASTG 2 cut(s) 81, 114
VpaK11BI GGWCC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.