Prupe.7G108800_v2.0.a1

Replication protein A 14 kDa subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
13705105 .. 13707388
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G108800.1

Sequence Viewer

Length: 321 bp
ATGGATACCTCAAATCCTGCAGTTTTTGTCAATGCAGAGCTTCTGCGATTGTATGTTGGAAGGCGGGTGCGGGCACTGATTCAGGTTGTGCGAACCGAGGGTGGAACTGTCATTGGAAAATCTACTGATGAAAACCAGCTAGTTGTAAAGGGCTCCCCACCCTTTCCTCTTACAAAATTTGTTGAGGTCATAGGCATTGCTGATGGTGAAAAATCCATCCATGCTGACATATGGAACAACTTTGGAGAGACAATTGACACAACTACTTACAATCAGCTCTGTCAGCTTGCAAACGGGGATTTTAAACACTTGTTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.72

Weight (kDa)

5.58

Isoelectric Point (pI)

15.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52630 AT3G52630 AT4G18590
fragaria_vesca FvH4_6g18910
malus_domestica MD12G1025300.v1.1 MD14G1024000.v1.1
prunus_persica Prupe.7G108800_v2.0.a1
pyrus_communis pycom12g02480
rosa_chinensis RchiOBHm_Chr3g0473901
rosa_laevigata RLG00000023972
rosa_multiflora Rmu_sc0002414.1_g000040
rosa_roxburghii Rroxscaffold_6G00407670
rosa_rugosa Rorug03G0136800
rosa_samantha Rh3AG187000 Rh3BG215600 Rh3CG212300 Rh3DG211500
rosa_wichuraiana Rw3G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 70
AcsI RAATTY 1 cut(s) 176
AluBI AGCT 4 cut(s) 40, 139, 277, 286
AluI AGCT 4 cut(s) 40, 139, 277, 286
Alw26I GTCTC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 218
BaeGI GKGCMC 1 cut(s) 76
BanII GRGCYC 1 cut(s) 155
BccI CCATC 2 cut(s) 197, 224
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 76, 155
BspACI CCGC 2 cut(s) 64, 70
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 72, 288
BstF5I GGATG 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 18
BstSLI GKGCMC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 2 cut(s) 72, 288
CviAII CATG 1 cut(s) 221
CviJI RGCY 5 cut(s) 40, 139, 153, 277, 286
CviKI_1 RGCY 5 cut(s) 40, 139, 153, 277, 286
DraI TTTAAA 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 1 cut(s) 224
FaiI YATR 5 cut(s) 54, 191, 222, 230, 232
FatI CATG 1 cut(s) 220
FauI CCCGC 2 cut(s) 57, 63
FauNDI CATATG 1 cut(s) 230
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 1 cut(s) 140
Hin1II CATG 1 cut(s) 224
HinfI GANTC 1 cut(s) 79
HphI GGTGA 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 20, 35, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
Hsp92II CATG 1 cut(s) 224
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 3 cut(s) 30, 68, 149
MaeI CTAG 1 cut(s) 140
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 2 cut(s) 76, 155
MluCI AATT 2 cut(s) 176, 252
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 4 cut(s) 19, 91, 177, 178
MseI TTAA 1 cut(s) 303
MunI CAATTG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeI CATATG 1 cut(s) 230
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 154
PstI CTGCAG 1 cut(s) 22
SaqAI TTAA 1 cut(s) 303
SduI GDGCHC 2 cut(s) 76, 155
SetI ASST 7 cut(s) 11, 42, 87, 141, 189, 279, 288
SfcI CTRYAG 1 cut(s) 18
Sse9I AATT 2 cut(s) 176, 252
SsiI CCGC 2 cut(s) 64, 70
SspMI CTAG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 109
TasI AATT 2 cut(s) 176, 252
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 2 cut(s) 144, 304
TspRI CASTG 1 cut(s) 81
XapI RAATTY 1 cut(s) 176
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.