FvH4_6g18910

Replication protein A 14 kDa subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013004
Physical Location & Seq
Reverse (-)
12467620 .. 12469315
1696 bp
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UTR
Exon/CDS
Intron
FvH4_6g18910.t1

Sequence Viewer

Length: 321 bp
ATGGATACGTCAAACCCTTCCGTTTTTGTCAATGCAGAGCTGCTGAGGTTGTATGTTGGAAGGCAAGTTCGGGCATTGATTCAGGTTGCGCAATCGGGTGCTGGATCTGTCATTGGCAATTCTACTGATGGTGTTCAGTTAATTGTAAAGGGCACCCCACCCTCTCCTCTTACAAAGTTTGTTGAGGTCATAGGTATTGCTGACAGTGATAAATCTATCCAAGCTAGCATATGGAACAACTTTGGCGACACAATTGACACACATGCTTACAACCAGCTTTGCCTGCTTGCAAATGGAGATTTTAAGCACTTGTTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460
Pfam Domains
Protein Families
Rep_fac-A_3

Protein Analysis

107

Amino Acids

11.39

Weight (kDa)

5.44

Isoelectric Point (pI)

12.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rep_fac-A_3 PF08661 1 - 99 4.2e-20 Replication factor A protein 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52630 AT3G52630 AT4G18590
fragaria_vesca FvH4_6g18910
malus_domestica MD12G1025300.v1.1 MD14G1024000.v1.1
prunus_persica Prupe.7G108800_v2.0.a1
pyrus_communis pycom12g02480
rosa_chinensis RchiOBHm_Chr3g0473901
rosa_laevigata RLG00000023972
rosa_multiflora Rmu_sc0002414.1_g000040
rosa_roxburghii Rroxscaffold_6G00407670
rosa_rugosa Rorug03G0136800
rosa_samantha Rh3AG187000 Rh3BG215600 Rh3CG212300 Rh3DG211500
rosa_wichuraiana Rw3G017120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 152
AclWI GGATC 1 cut(s) 112
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 3 cut(s) 40, 224, 277
AluI AGCT 3 cut(s) 40, 224, 277
AlwI GGATC 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 40
AspLEI GCGC 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 155
BanI GGYRCC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 122
BfaI CTAG 1 cut(s) 225
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 154
BmtI GCTAGC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 44
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 228
BspPI GGATC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 152
BssMI GATC 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 226, 284, 288
BstDEI CTNAG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 226, 284, 288
CfoI GCGC 1 cut(s) 91
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 40, 224, 277
CviKI_1 RGCY 3 cut(s) 40, 224, 277
DdeI CTNAG 1 cut(s) 44
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
FaeI CATG 1 cut(s) 266
FaiI YATR 5 cut(s) 54, 191, 230, 232, 264
FatI CATG 1 cut(s) 262
FauNDI CATATG 1 cut(s) 230
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 225
FspI TGCGCA 1 cut(s) 90
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 91
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 27, 54
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 35, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 68, 87, 287, 296
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 1 cut(s) 225
MaeII ACGT 1 cut(s) 8
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 118, 141, 252
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 4 cut(s) 39, 172, 177, 178
MseI TTAA 2 cut(s) 140, 303
MunI CAATTG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeI CATATG 1 cut(s) 230
NdeII GATC 1 cut(s) 104
NheI GCTAGC 1 cut(s) 224
NlaIII CATG 1 cut(s) 266
NlaIV GGNNCC 1 cut(s) 154
NsbI TGCGCA 1 cut(s) 90
NspI RCATGY 1 cut(s) 266
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 104
SaqAI TTAA 2 cut(s) 140, 303
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 155
SetI ASST 8 cut(s) 11, 42, 50, 87, 189, 196, 226, 279
Sse9I AATT 3 cut(s) 118, 141, 252
SspMI CTAG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 11
TasI AATT 3 cut(s) 118, 141, 252
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 140, 303
Tru9I TTAA 2 cut(s) 140, 303
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 304
TspGWI ACGGA 1 cut(s) 10
TspRI CASTG 1 cut(s) 211
XceI RCATGY 1 cut(s) 266
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.