AT4G19100

Protein of unknown function (DUF3464)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015437
Physical Location & Seq
Forward (+)
10453415 .. 10454515
1101 bp
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UTR
Exon/CDS
Intron
AT4G19100.2

Sequence Viewer

Length: 645 bp
ATGGCTTCTGTACCATGTTCCTTCAAGCTCTCTGCTCATCGTAGATCTTCTTCCAAGCTTGATGGAAACAACAAACAGTGTAGTAGTTTAGTAGAAAGACTGAGAGATAAAACGAAGAGTCAAGTTCCTAAGTCCATTACTTGCATTAACCGCTTAGAGATATCGCGTATAGCACCATTACACGCAACGATGAATAGCCCGAAAGGATTTGGACCTCCTCCTAAGAAAACCAAGAAGTCGAAAAAGCCAAAACCCGGAAACCAAAGTGATGAAGACGACGACGATGAAGACGAAGATGATGATGATGAAGAAGATGAACGTGAGAGAGGTGTAATTCCAGAGATAGTGACCAACAGAATGATAAGCAGAATGGGATTTACAGTGGGGTTACCACTCTTCATTGGTCTTTTGTTCTTCCCATTCTTTTACTATCTCAAAGTGGGATTGAAAGTTGATGTGCCTACATGGGTTCCGTTTATTGTTTCGTTCGTCTTCTTTGGTACGGCTTTAGCTGGTGTGAGCTATGGGATCGTGTCTTCGAGCTGGGATCCGTTGAGAGAAGGTTCCTTGTTAGGCTGGAACGAAGCTAAGAAGAACTGGCCTGTCTTTTGGCAGTCCTTTTGGAATTCCTCAGACAAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3464

Protein Analysis

214

Amino Acids

24.21

Weight (kDa)

8.69

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3464 PF11947 11 - 143 7.5e-50 Photosynthesis affected mutant 68
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015437)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19100 AT4G19100
fragaria_vesca FvH4_5g23870
malus_domestica MD06G1014500.v1.1
prunus_persica Prupe.5G021700_v2.0.a1
pyrus_communis pycom06g01160
rosa_chinensis RchiOBHm_Chr7g0213261
rosa_laevigata RLG00000002817
rosa_multiflora Rmu_ssc0000084.1_g000025
rosa_roxburghii Rroxscaffold_3G00246130
rosa_rugosa Rorug07G0140900
rosa_samantha Rh7AG272400 Rh7BG268100 Rh7CG291800 Rh7DG280300
rosa_wichuraiana Rw7G023640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 166
AciI CCGC 1 cut(s) 151
AclWI GGATC 3 cut(s) 536, 542, 555
AcsI RAATTY 1 cut(s) 625
AfaI GTAC 2 cut(s) 12, 502
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 2 cut(s) 25, 448
AluBI AGCT 6 cut(s) 28, 58, 512, 522, 543, 587
AluI AGCT 6 cut(s) 28, 58, 512, 522, 543, 587
AlwI GGATC 3 cut(s) 536, 542, 555
AoxI GGCC 1 cut(s) 599
ApoI RAATTY 1 cut(s) 625
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 212
BamHI GGATCC 1 cut(s) 547
BarI GAAGNNNNNNTAC 2 cut(s) 34, 66
BbsI GAAGAC 4 cut(s) 279, 294, 484, 528
BccI CCATC 1 cut(s) 56
BceAI ACGGC 1 cut(s) 519
BcnI CCSGG 1 cut(s) 255
BglII AGATCT 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 3 cut(s) 471, 549, 565
BmrFI CCNGG 1 cut(s) 255
BpiI GAAGAC 4 cut(s) 279, 294, 484, 528
BpuMI CCSGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 602
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 2 cut(s) 92, 645
BseNI ACTGG 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 601
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 601
Bsp143I GATC 3 cut(s) 44, 528, 547
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 2 cut(s) 93, 644
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 3 cut(s) 471, 549, 565
BspPI GGATC 3 cut(s) 536, 542, 555
BsrI ACTGG 1 cut(s) 602
BssMI GATC 3 cut(s) 44, 528, 547
Bst4CI ACNGT 2 cut(s) 78, 382
Bst6I CTCTTC 2 cut(s) 110, 401
BstDEI CTNAG 6 cut(s) 101, 129, 154, 222, 588, 631
BstEII GGTNACC 1 cut(s) 387
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 3 cut(s) 47, 531, 550
BstMBI GATC 3 cut(s) 44, 528, 547
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstPI GGTNACC 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 253
BstUI CGCG 1 cut(s) 166
BstV2I GAAGAC 4 cut(s) 279, 294, 484, 528
BstX2I RGATCY 2 cut(s) 44, 547
BstYI RGATCY 2 cut(s) 44, 547
BsuRI GGCC 1 cut(s) 601
BtsIMutI CAGTG 2 cut(s) 83, 387
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 11, 501
CviAII CATG 2 cut(s) 15, 465
CviQI GTAC 2 cut(s) 11, 501
DdeI CTNAG 6 cut(s) 101, 129, 154, 222, 588, 631
DpnI GATC 3 cut(s) 46, 530, 549
DpnII GATC 3 cut(s) 44, 528, 547
Eam1104I CTCTTC 2 cut(s) 110, 401
EarI CTCTTC 2 cut(s) 110, 401
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 387
EcoO65I GGTNACC 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 625
EcoRV GATATC 1 cut(s) 162
FaeI CATG 2 cut(s) 18, 468
FaiI YATR 4 cut(s) 16, 170, 466, 525
FatI CATG 2 cut(s) 14, 464
GsaI CCCAGC 1 cut(s) 547
HaeIII GGCC 1 cut(s) 601
HapII CCGG 1 cut(s) 255
Hin1II CATG 2 cut(s) 18, 468
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 634
Hpy188III TCNNGA 1 cut(s) 338
Hpy99I CGWCG 2 cut(s) 281, 284
HpyAV CCTTC 2 cut(s) 31, 554
HpyCH4III ACNGT 2 cut(s) 78, 382
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 6 cut(s) 101, 129, 154, 222, 588, 631
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 2 cut(s) 18, 468
Kzo9I GATC 3 cut(s) 44, 528, 547
LpnPI CCDG 7 cut(s) 268, 351, 498, 529, 562, 583, 615
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 346, 387
MalI GATC 3 cut(s) 46, 530, 549
MboI GATC 3 cut(s) 44, 528, 547
MflI RGATCY 2 cut(s) 44, 547
MluCI AATT 2 cut(s) 333, 625
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 4 cut(s) 225, 228, 320, 640
MseI TTAA 1 cut(s) 147
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 255
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 150
NciI CCSGG 1 cut(s) 255
NdeII GATC 3 cut(s) 44, 528, 547
NlaIII CATG 2 cut(s) 18, 468
NlaIV GGNNCC 3 cut(s) 471, 549, 565
NmuCI GTSAC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PspEI GGTNACC 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 471, 549, 565
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 2 cut(s) 44, 547
RsaI GTAC 2 cut(s) 12, 502
RsaNI GTAC 2 cut(s) 11, 501
SaqAI TTAA 1 cut(s) 147
Sau3AI GATC 3 cut(s) 44, 528, 547
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 255
SinI GGWCC 1 cut(s) 212
Sse9I AATT 2 cut(s) 333, 625
SsiI CCGC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 2 cut(s) 78, 382
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 239, 539
TasI AATT 2 cut(s) 333, 625
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 2 cut(s) 83, 387
TseFI GTSAC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 6 cut(s) 206, 285, 300, 321, 330, 388
TspGWI ACGGA 2 cut(s) 462, 540
TspRI CASTG 2 cut(s) 83, 387
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.