Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000084.1

Orthogroup ID

OG0015437

Physical Location & Seq

Genomic Coordinates Reverse (-)

114220 .. 115202

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000084.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atggcagctgcaatttcaggttcatggtcttccaagccctctccaatcacttcgcaacacccatcattatcatccaagattggccttaagccttggacgctgtccacaaaacccaactaccccatttccagaacaaatcaaagcaaaaatcagagctacttttcatcatcctccacacaattaaatgcgaccttgaagaatccaagaggcttcggtcggccaccaaagaaaagcaagaagaccaccaccaagaagaagacggaacaaaacaatgacgacagtggcaatgaagatgaggaagacgaagaggacgaagcagaagaaggcataataccagagatagtgaccaacaggatgataaccaggatgggattcacagttgggcttccactgtttatgggactattgtttttcccattcttctactacttaaaagtaggtctcaaaattgatgtgcccacatgggtgcccttcattgtgtcatttgtgttctttgggacagctcttgcgggagtgagctatgggattgtgtcctctagttgggaccctatgagggaagggtcgctcttgggttggaacgaggctcagaagaattggcctgtattttggagatctcttaggggtggatcgaggaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3464

Protein Analysis

213

Amino Acids

23.81

Weight (kDa)

9.57

Isoelectric Point (pI)

39.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19100 AT4G19100
fragaria_vesca	FvH4_5g23870
malus_domestica	MD06G1014500.v1.1
prunus_persica	Prupe.5G021700_v2.0.a1
pyrus_communis	pycom06g01160
rosa_chinensis	RchiOBHm_Chr7g0213261
rosa_laevigata	RLG00000002817
rosa_multiflora	Rmu_ssc0000084.1_g000025
rosa_roxburghii	Rroxscaffold_3G00246130
rosa_rugosa	Rorug07G0140900
rosa_samantha	Rh7AG272400 Rh7BG268100 Rh7CG291800 Rh7DG280300
rosa_wichuraiana	Rw7G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	1 cut(s)	634
AcoI	YGGCCR	1 cut(s)	218
AfiI	CCNNNNNNNGG	2 cut(s)	540, 553
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	362
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	4 cut(s)	8, 156, 503, 519
AluI	AGCT	4 cut(s)	8, 156, 503, 519
Alw26I	GTCTC	1 cut(s)	446
AlwI	GGATC	1 cut(s)	634
AoxI	GGCC	3 cut(s)	82, 218, 596
ApeKI	GCWGC	2 cut(s)	5, 8
AspS9I	GGNCC	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	544
BaeGI	GKGCMC	2 cut(s)	459, 471
BanI	GGYRCC	1 cut(s)	466
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BbsI	GAAGAC	4 cut(s)	21, 245, 263, 306
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	70, 361
BciT130I	CCWGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	446
BfaI	CTAG	2 cut(s)	537, 640
BfrI	CTTAAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	3 cut(s)	468, 545, 546
BmrFI	CCNGG	1 cut(s)	364
BpiI	GAAGAC	4 cut(s)	21, 245, 263, 306
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	540, 553
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	4 cut(s)	71, 167, 360, 372
BseLI	CCNNNNNNNGG	2 cut(s)	540, 553
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	599
BseSI	GKGCMC	2 cut(s)	459, 471
BseXI	GCAGC	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	84, 220, 598
BshNI	GGYRCC	1 cut(s)	466
BsiEI	CGRYCG	1 cut(s)	217
BslFI	GGGAC	3 cut(s)	414, 511, 557
BslI	CCNNNNNNNGG	2 cut(s)	540, 553
BsmAI	GTCTC	1 cut(s)	446
BsmFI	GGGAC	3 cut(s)	414, 511, 557
BsnI	GGCC	3 cut(s)	84, 220, 598
Bso31I	GGTCTC	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	459, 471
Bsp143I	GATC	2 cut(s)	611, 626
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	3 cut(s)	84, 220, 598
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	3 cut(s)	468, 545, 546
BspPI	GGATC	1 cut(s)	634
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	611, 626
BssT1I	CCWWGG	1 cut(s)	92
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	281, 379, 393
Bst6I	CTCTTC	1 cut(s)	300
BstAFI	CTTAAG	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	585, 617
BstF5I	GGATG	4 cut(s)	71, 167, 360, 372
BstKTI	GATC	2 cut(s)	614, 629
BstMAI	GTCTC	1 cut(s)	446
BstMBI	GATC	2 cut(s)	611, 626
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	2 cut(s)	459, 471
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	4 cut(s)	21, 245, 263, 306
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BsuRI	GGCC	3 cut(s)	84, 220, 598
BtsCI	GGATG	4 cut(s)	71, 167, 360, 372
BtsIMutI	CAGTG	2 cut(s)	286, 389
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	106
CviAII	CATG	2 cut(s)	24, 462
DdeI	CTNAG	2 cut(s)	585, 617
DpnI	GATC	2 cut(s)	613, 628
DpnII	GATC	2 cut(s)	611, 626
EaeI	YGGCCR	1 cut(s)	218
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	2 cut(s)	27, 465
FaiI	YATR	6 cut(s)	25, 329, 398, 463, 522, 551
FaqI	GGGAC	3 cut(s)	414, 511, 557
FatI	CATG	2 cut(s)	23, 461
FauI	CCCGC	1 cut(s)	502
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	4 cut(s)	58, 154, 367, 379
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	2 cut(s)	537, 640
GluI	GCNGC	2 cut(s)	6, 9
HaeIII	GGCC	3 cut(s)	84, 220, 598
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	27, 465
HinfI	GANTC	2 cut(s)	199, 372
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	2 cut(s)	153, 588
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	317, 481, 551
HpyCH4III	ACNGT	3 cut(s)	281, 379, 393
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	585, 617
Hsp92II	CATG	2 cut(s)	27, 465
KflI	GGGWCCC	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	611, 626
LpnPI	CCDG	7 cut(s)	3, 142, 337, 348, 349, 376, 612
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	2 cut(s)	537, 640
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	613, 628
MboI	GATC	2 cut(s)	611, 626
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	459, 471
MluCI	AATT	4 cut(s)	12, 179, 447, 592
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	9 cut(s)	49, 181, 200, 289, 301, 544, 546, 574, 624
MseI	TTAA	3 cut(s)	87, 182, 431
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	2 cut(s)	611, 626
NlaIII	CATG	2 cut(s)	27, 465
NlaIV	GGNNCC	3 cut(s)	468, 545, 546
NmuCI	GTSAC	1 cut(s)	343
OliI	CACNNNNGTG	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	199, 372
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	7, 10
PpuMI	RGGWCCY	1 cut(s)	544
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	3 cut(s)	468, 545, 546
PspPI	GGNCC	1 cut(s)	544
PspPPI	RGGWCCY	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	611
PsyI	GACNNNGTC	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	8
RseI	CAYNNNNRTG	1 cut(s)	464
SaqAI	TTAA	3 cut(s)	87, 182, 431
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	2 cut(s)	611, 626
Sau96I	GGNCC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	459, 471
SetI	ASST	7 cut(s)	10, 22, 158, 194, 442, 505, 521
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	4 cut(s)	12, 179, 447, 592
SsiI	CCGC	1 cut(s)	509
SspMI	CTAG	2 cut(s)	537, 640
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	3 cut(s)	281, 379, 393
TaqI	TCGA	1 cut(s)	629
TaqII	GACCGA	1 cut(s)	203
TasI	AATT	4 cut(s)	12, 179, 447, 592
TfiI	GAWTC	2 cut(s)	199, 372
Tru1I	TTAA	3 cut(s)	87, 182, 431
Tru9I	TTAA	3 cut(s)	87, 182, 431
TscAI	CASTG	2 cut(s)	286, 396
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	12, 153, 303, 463
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	2 cut(s)	286, 396
Tth111I	GACNNNGTC	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	544
XspI	CTAG	2 cut(s)	537, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.