Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015437

Physical Location & Seq

Genomic Coordinates Reverse (-)

1225104 .. 1226225

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g01160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTGCAATTGCAGCAGGGCTCGCTTCATGGTCATCATCCAAGCCCTCCCTGATTCCTTCCCAGCACCAAATATCATCACCATCATCATCACCTAATAAGTTTGACGCTAAGCCTTGGAGCCTCTCCATGACCAGCAGTTTAAATGAGGATATAAAAATCCAGTACCCAATCTCCGCAACAAAACAATGCCCAAATACTCAGAAACAATTGAATGCCACCTTGAGAAGCCCAAGAGGCTTCGGACCCTCCCCAAGGAAAAAGAAAAAGATTACCGAGAAGCCGAAGAAGACCCGAAACAATGATAGCGACGACGACGACGACGATGAAGATGAAGATGAGGAGGAAGGAGAGGAAGGAGTGATACCAGAGGTGGTGACCAACAGGATGATTGGAAGGATGGGCTTCACAGTTGGGCTTCCATTATTTTTGGGCCTCTTGTTTTTCCCTTTCTTTTACTATTTGAAAGTTGGTCTGAAAATTGATGTTCCCACCTGGGTGCCCTTCATTGTGTCATTTGTCTTCTTTGGGACAGCCCTATTGGGGGTCAGCTATGGGATTGTGTCCTCCAGCTGGGATCCTATGAGGGAAGGCTCCCTCTTGGGTTGGACTGAAGCTCAAAAAAATTGGCCTGTATTTTGGCGGTCCCTTCGTGGTGGTGGATCGAAAAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3464

Protein Analysis

226

Amino Acids

25.0

Weight (kDa)

7.75

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19100 AT4G19100
fragaria_vesca	FvH4_5g23870
malus_domestica	MD06G1014500.v1.1
prunus_persica	Prupe.5G021700_v2.0.a1
pyrus_communis	pycom06g01160
rosa_chinensis	RchiOBHm_Chr7g0213261
rosa_laevigata	RLG00000002817
rosa_multiflora	Rmu_ssc0000084.1_g000025
rosa_roxburghii	Rroxscaffold_3G00246130
rosa_rugosa	Rorug07G0140900
rosa_samantha	Rh7AG272400 Rh7BG268100 Rh7CG291800 Rh7DG280300
rosa_wichuraiana	Rw7G023640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	499
AciI	CCGC	2 cut(s)	177, 643
AclWI	GGATC	3 cut(s)	572, 585, 670
AcuI	CTGAAG	1 cut(s)	633
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	4 cut(s)	255, 543, 544, 573
AgsI	TTSAA	2 cut(s)	214, 466
AjnI	CCWGG	1 cut(s)	494
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	3 cut(s)	552, 573, 617
AluI	AGCT	3 cut(s)	552, 573, 617
AlwI	GGATC	3 cut(s)	572, 585, 670
AoxI	GGCC	2 cut(s)	433, 629
ApeKI	GCWGC	2 cut(s)	5, 14
AspS9I	GGNCC	3 cut(s)	245, 433, 645
AsuHPI	GGTGA	3 cut(s)	72, 84, 388
AvaII	GGWCC	2 cut(s)	245, 645
BaeGI	GKGCMC	1 cut(s)	504
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	24
BarI	GAAGNNNNNNTAC	2 cut(s)	348, 380
BbsI	GAAGAC	2 cut(s)	296, 514
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	91, 394
BciT130I	CCWGG	1 cut(s)	496
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	6, 15
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	2 cut(s)	7, 16
Bme1390I	CCNGG	1 cut(s)	496
Bme18I	GGWCC	2 cut(s)	245, 645
BmgT120I	GGNCC	3 cut(s)	245, 433, 645
BmiI	GGNNCC	6 cut(s)	122, 247, 501, 579, 595, 647
BmrFI	CCNGG	1 cut(s)	496
BpiI	GAAGAC	2 cut(s)	296, 514
BpmI	CTGGAG	1 cut(s)	553
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	116, 254, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	4 cut(s)	255, 543, 544, 573
Bse1I	ACTGG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	3 cut(s)	116, 254, 495
BseGI	GGATG	3 cut(s)	38, 393, 405
BseLI	CCNNNNNNNGG	4 cut(s)	255, 543, 544, 573
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	2 cut(s)	63, 573
BshFI	GGCC	2 cut(s)	435, 631
BshNI	GGYRCC	1 cut(s)	499
BslFI	GGGAC	2 cut(s)	544, 631
BslI	CCNNNNNNNGG	4 cut(s)	255, 543, 544, 573
BsmFI	GGGAC	2 cut(s)	544, 631
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	435, 631
Bsp1286I	GDGCHC	2 cut(s)	24, 504
Bsp143I	GATC	2 cut(s)	577, 662
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	2 cut(s)	177, 643
BspANI	GGCC	2 cut(s)	435, 631
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	6 cut(s)	122, 247, 501, 579, 595, 647
BspPI	GGATC	3 cut(s)	572, 585, 670
BspT107I	GGYRCC	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	116, 254, 495
BssMI	GATC	2 cut(s)	577, 662
BssT1I	CCWWGG	2 cut(s)	116, 254
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	111, 201
BstEII	GGTNACC	1 cut(s)	376
BstENI	CCTNNNNNAGG	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	38, 393, 405
BstKTI	GATC	2 cut(s)	580, 665
BstMBI	GATC	2 cut(s)	577, 662
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 23, 237
BstNI	CCWGG	1 cut(s)	496
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	494
BstSLI	GKGCMC	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	2 cut(s)	296, 514
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	2 cut(s)	435, 631
BtsCI	GGATG	3 cut(s)	38, 393, 405
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	245, 433, 645
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	30, 130
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	2 cut(s)	111, 201
DpnI	GATC	2 cut(s)	579, 664
DpnII	GATC	2 cut(s)	577, 662
DraI	TTTAAA	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	116, 254
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	245, 645
Eco57I	CTGAAG	1 cut(s)	633
Eco91I	GGTNACC	1 cut(s)	376
EcoNI	CCTNNNNNAGG	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	116, 254
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	2 cut(s)	116, 254
FaeI	CATG	2 cut(s)	33, 133
FaiI	YATR	5 cut(s)	31, 131, 155, 555, 584
FaqI	GGGAC	2 cut(s)	544, 631
FatI	CATG	2 cut(s)	29, 129
Fnu4HI	GCNGC	2 cut(s)	6, 15
FokI	GGATG	3 cut(s)	25, 400, 412
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	6, 15
GluI	GCNGC	2 cut(s)	6, 15
GsaI	CCCAGC	2 cut(s)	67, 577
GsuI	CTGGAG	1 cut(s)	553
HaeIII	GGCC	2 cut(s)	435, 631
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	33, 133
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	3 cut(s)	72, 84, 388
Hpy188I	TCNGA	3 cut(s)	204, 245, 477
Hpy99I	CGWCG	5 cut(s)	314, 317, 320, 323, 326
HpyAV	CCTTC	7 cut(s)	69, 341, 350, 390, 514, 584, 659
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	2 cut(s)	8, 14
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 23, 237
HpyF3I	CTNAG	2 cut(s)	111, 201
Hsp92II	CATG	2 cut(s)	33, 133
Kzo9I	GATC	2 cut(s)	577, 662
LmnI	GCTCC	2 cut(s)	120, 599
Lsp1109I	GCAGC	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	579, 664
MboI	GATC	2 cut(s)	577, 662
MboII	GAAGA	5 cut(s)	298, 301, 341, 347, 514
MfeI	CAATTG	2 cut(s)	9, 209
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	24, 504
MluCI	AATT	4 cut(s)	9, 209, 480, 625
MmeI	TCCRAC	1 cut(s)	587
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	496
MunI	CAATTG	2 cut(s)	9, 209
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 23, 237
NdeII	GATC	2 cut(s)	577, 662
NlaIII	CATG	2 cut(s)	33, 133
NlaIV	GGNNCC	6 cut(s)	122, 247, 501, 579, 595, 647
NmuCI	GTSAC	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 321
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	7, 16
Psp6I	CCWGG	1 cut(s)	494
PspEI	GGTNACC	1 cut(s)	376
PspFI	CCCAGC	2 cut(s)	63, 573
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	6 cut(s)	122, 247, 501, 579, 595, 647
PspPI	GGNCC	3 cut(s)	245, 433, 645
PsuI	RGATCY	1 cut(s)	577
PvuII	CAGCTG	1 cut(s)	573
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	6, 15
Sau3AI	GATC	2 cut(s)	577, 662
Sau96I	GGNCC	3 cut(s)	245, 433, 645
ScrFI	CCNGG	1 cut(s)	496
SduI	GDGCHC	2 cut(s)	24, 504
SetI	ASST	7 cut(s)	97, 224, 375, 497, 554, 575, 619
SinI	GGWCC	2 cut(s)	245, 645
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	4 cut(s)	9, 209, 480, 625
SsiI	CCGC	2 cut(s)	177, 643
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	2 cut(s)	116, 254
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	1 cut(s)	665
TasI	AATT	4 cut(s)	9, 209, 480, 625
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	5, 14
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	18, 342, 348, 496
VpaK11BI	GGWCC	2 cut(s)	245, 645
XagI	CCTNNNNNAGG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.