AT4G19390

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008652
Physical Location & Seq
Reverse (-)
10574726 .. 10577404
2679 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G19390.1

Sequence Viewer

Length: 822 bp
ATGACGACGCCGTGCCGGACCATTAACGCTAATGCTATCGCCGCACCGTCGCCTTCGGGATTGATCTTTAACGGGTTTCGTGATTTCGTCCCGATTGAAAAGAGGCTTGTTATATCAAGCTTTCGTGGCTTGAAACTACCGTCGAGGACGACGAAGACTATTACGAGCTCTGACTGGAGTTGGAGTTATAGGTCTCCGGGAAGATTGGCGTCTGCGTCTACGTCTACGTCTGCGTCTACGTCTACGTCTGCGGCTGTAACATCGAATTCTACGAATAGATTTGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTATAGTTGTCGATTTATGACGTTTCTTGGAACATTAGGATCTTTGCTCGGATCGGTTCTCTGTTTCATCAAGGGATGTATGTATGTTGTAGACTCGTTTTTGCAGTATTCGGTGAATCGTGGGAAAGTGATATTCCTTTTGGTTGAGGCCATAGATATATATCTCCTAGGAACTGTGATGTTAGTCTTTGGATTGGGACTTTACGAGTTGTTCATCAGCAATCTCGATACTTCAGAGTCGCGCACACACGATATTGTTTCCAATAGGTCGAGCCTCTTTGGCATGTTCACCTTAAAGGAGCGACCTCAATGGTTAGAGGTGAAATCGGTAAGCGAGCTGAAAACAAAGTTGGGACATGTAATAGTGATGCTACTATTGATTGGTTTGTTTGACAAGAGCAAGAGAGTAGTCATAACTTCTGTCACGGATTTGCTATGTATCTCTGTTTCTATCTTTTTTTCTTCTGCTTGTCTCTTCTTGCTCTCTAGGCTCAATGGTTCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

273

Amino Acids

30.04

Weight (kDa)

9.3

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 105 - 237 1.5e-36 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 5 cut(s) 218, 224, 236, 242, 405
AccII CGCG 1 cut(s) 556
AciI CCGC 2 cut(s) 42, 251
AclWI GGATC 2 cut(s) 361, 373
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 531
AcyI GRCGYC 2 cut(s) 8, 209
AflIII ACRYGT 1 cut(s) 670
AgsI TTSAA 3 cut(s) 98, 133, 284
AjuI GAANNNNNNNTTGG 2 cut(s) 647, 679
AluBI AGCT 4 cut(s) 120, 168, 287, 652
AluI AGCT 4 cut(s) 120, 168, 287, 652
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 2 cut(s) 198, 791
AlwI GGATC 2 cut(s) 361, 373
AoxI GGCC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 265
AspA2I CCTAGG 1 cut(s) 481
AspLEI GCGC 1 cut(s) 558
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 3 cut(s) 439, 595, 646
AvaII GGWCC 1 cut(s) 18
AvrII CCTAGG 1 cut(s) 481
BanII GRGCYC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 170
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 198, 791
BfaI CTAG 2 cut(s) 482, 801
BglI GCCNNNNNGGC 1 cut(s) 594
BisI GCNGC 2 cut(s) 42, 252
BlnI CCTAGG 1 cut(s) 481
BlsI GCNGC 2 cut(s) 43, 253
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 2 cut(s) 8, 209
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bse1I ACTGG 1 cut(s) 179
Bse8I GATNNNNATC 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 1 cut(s) 395
BseJI GATNNNNATC 1 cut(s) 474
BseNI ACTGG 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 556
BshFI GGCC 1 cut(s) 464
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 2 cut(s) 16, 197
BslFI GGGAC 3 cut(s) 74, 525, 681
BsmAI GTCTC 2 cut(s) 198, 791
BsmFI GGGAC 3 cut(s) 74, 525, 681
BsnI GGCC 1 cut(s) 464
Bso31I GGTCTC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 63, 353, 365
BspACI CCGC 2 cut(s) 42, 251
BspANI GGCC 1 cut(s) 464
BspFNI CGCG 1 cut(s) 556
BspPI GGATC 2 cut(s) 361, 373
BspTNI GGTCTC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 3 cut(s) 63, 353, 365
BssNI GRCGYC 2 cut(s) 8, 209
BssT1I CCWWGG 1 cut(s) 481
Bst4CI ACNGT 3 cut(s) 48, 141, 490
Bst6I CTCTTC 2 cut(s) 288, 794
BstACI GRCGYC 2 cut(s) 8, 209
BstC8I GCNNGC 1 cut(s) 650
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 556
BstHHI GCGC 1 cut(s) 558
BstKTI GATC 3 cut(s) 66, 356, 368
BstMAI GTCTC 2 cut(s) 198, 791
BstMBI GATC 3 cut(s) 63, 353, 365
BstMWI GCNNNNNNNGC 4 cut(s) 41, 126, 594, 802
BstNSI RCATGY 2 cut(s) 601, 674
BstSCI CCNGG 1 cut(s) 196
BstUI CGCG 1 cut(s) 556
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 1 cut(s) 464
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 817
Cac8I GCNNGC 1 cut(s) 650
CfoI GCGC 1 cut(s) 558
Cfr13I GGNCC 1 cut(s) 18
CseI GACGC 4 cut(s) 16, 198, 204, 222
CviAII CATG 2 cut(s) 598, 671
DpnI GATC 3 cut(s) 65, 355, 367
DpnII GATC 3 cut(s) 63, 353, 365
Eam1104I CTCTTC 2 cut(s) 288, 794
EarI CTCTTC 2 cut(s) 288, 794
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 481
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 168
EcoRI GAATTC 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 2 cut(s) 601, 674
FaqI GGGAC 3 cut(s) 74, 525, 681
FatI CATG 2 cut(s) 597, 670
FblI GTMKAC 5 cut(s) 218, 224, 236, 242, 405
Fnu4HI GCNGC 2 cut(s) 42, 252
FokI GGATG 1 cut(s) 402
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 42, 252
FspBI CTAG 2 cut(s) 482, 801
GlaI GCGC 1 cut(s) 557
GluI GCNGC 2 cut(s) 42, 252
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 464
HapII CCGG 2 cut(s) 16, 197
HgaI GACGC 4 cut(s) 16, 198, 204, 222
HhaI GCGC 1 cut(s) 558
Hin1I GRCGYC 2 cut(s) 8, 209
Hin1II CATG 2 cut(s) 601, 674
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HindIII AAGCTT 2 cut(s) 118, 285
HinfI GANTC 3 cut(s) 407, 430, 551
HpaII CCGG 2 cut(s) 16, 197
HphI GGTGA 3 cut(s) 439, 595, 646
Hpy166II GTNNAC 7 cut(s) 219, 225, 237, 243, 406, 603, 815
Hpy188I TCNGA 3 cut(s) 172, 365, 550
Hpy188III TCNNGA 4 cut(s) 57, 80, 91, 539
Hpy8I GTNNAC 7 cut(s) 219, 225, 237, 243, 406, 603, 815
Hpy99I CGWCG 4 cut(s) 10, 52, 145, 154
HpyAV CCTTC 2 cut(s) 63, 301
HpyCH4III ACNGT 3 cut(s) 48, 141, 490
HpyCH4IV ACGT 5 cut(s) 221, 227, 239, 245, 335
HpyCH4V TGCA 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 126, 594, 802
HpySE526I ACGT 5 cut(s) 221, 227, 239, 245, 335
Hsp92I GRCGYC 2 cut(s) 8, 209
Hsp92II CATG 2 cut(s) 601, 674
HspAI GCGC 1 cut(s) 556
Kzo9I GATC 3 cut(s) 63, 353, 365
LmnI GCTCC 1 cut(s) 613
LpnPI CCDG 3 cut(s) 29, 160, 210
LweI GCATC 1 cut(s) 672
MaeI CTAG 2 cut(s) 482, 801
MaeII ACGT 5 cut(s) 221, 227, 239, 245, 335
MaeIII GTNAC 2 cut(s) 256, 736
MalI GATC 3 cut(s) 65, 355, 367
MboI GATC 3 cut(s) 63, 353, 365
MboII GAAGA 5 cut(s) 166, 213, 305, 768, 781
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 265
MlyI GAGTC 2 cut(s) 401, 560
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 7 cut(s) 96, 138, 289, 454, 599, 625, 630
MseI TTAA 3 cut(s) 24, 69, 608
MspI CCGG 2 cut(s) 16, 197
MspR9I CCNGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 556
MwoI GCNNNNNNNGC 4 cut(s) 41, 126, 594, 802
NciI CCSGG 1 cut(s) 198
NdeII GATC 3 cut(s) 63, 353, 365
NlaIII CATG 2 cut(s) 601, 674
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 2 cut(s) 601, 674
PciI ACATGT 1 cut(s) 670
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 269
PfeI GAWTC 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 2 cut(s) 43, 253
PleI GAGTC 2 cut(s) 401, 559
PpsI GAGTC 2 cut(s) 401, 559
PscI ACATGT 1 cut(s) 670
Psp124BI GAGCTC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 353
SacI GAGCTC 1 cut(s) 170
SaqAI TTAA 3 cut(s) 24, 69, 608
SatI GCNGC 2 cut(s) 42, 252
Sau3AI GATC 3 cut(s) 63, 353, 365
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 401, 560
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 1 cut(s) 672
SinI GGWCC 1 cut(s) 18
Sse9I AATT 1 cut(s) 265
SsiI CCGC 2 cut(s) 42, 251
SspMI CTAG 2 cut(s) 482, 801
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 3 cut(s) 48, 141, 490
TaiI ACGT 5 cut(s) 224, 230, 242, 248, 338
TaqI TCGA 5 cut(s) 143, 263, 325, 540, 584
TasI AATT 1 cut(s) 265
TauI GCSGC 2 cut(s) 44, 254
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 3 cut(s) 24, 69, 608
Tru9I TTAA 3 cut(s) 24, 69, 608
TseFI GTSAC 1 cut(s) 736
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 2 cut(s) 370, 517
TspGWI ACGGA 1 cut(s) 755
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 265
XceI RCATGY 2 cut(s) 601, 674
XmaJI CCTAGG 1 cut(s) 481
XmiI GTMKAC 5 cut(s) 218, 224, 236, 242, 405
XspI CTAG 2 cut(s) 482, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.