Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029270.1

Orthogroup ID

OG0008652

Physical Location & Seq

Genomic Coordinates Forward (+)

7780 .. 12100

Gene Structure 4321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029270.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgacattacctcgccctctgttctcaaaacccatcagcagaaccgcaccaccaccgcttctgatcacaacttcaaaacccaataatacacacttgaatggcttctctgctttcaatcctcatgctctcaagttcatcgtctccatggctgcaagccccggacccggcatttcttccgccccacagcactcctcgtcgccgccgatcccttccaccatcgcctccgactccggcgcctcgcagaagtcacctagtgtactagaggccattgaggcagacttggagaaggttatatatggatgtcggttcatggcgtttatggcggttttggggtctttgattggatcgcttctgtgttacatcaagggctgcacttatgttgtacaatctttcatggaatactttgtacatcgtagtaaggtcatcttgttgctgattgatgccattgtgatgttggtgtttggaatgggtctttatgagctattcatcagcaacctcgacaaggtgaattctctctcagaggatgaagcatgtacatcgagtctttttggcatgttcattatgaaggcacgaccaaagtggttagatataacaaccgtcaatgaactgaaaacgaagattggccatgtaattgtaatgctccttttaatcgggttgttagagaagagtatgttagcagttatacaatctcctctcgacttgctttgcttttcagcctctgtcctcctctcctctggttgcctccttttactttctaagctcaaggattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

256

Amino Acids

27.68

Weight (kDa)

8.5

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19390 AT4G19390
fragaria_vesca	FvH4_5g24900 FvH4_5g24900 FvH4_5g24900
prunus_persica	Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1
pyrus_communis	pycom06g00970
rosa_chinensis	RchiOBHm_Chr7g0215231
rosa_laevigata	RLG00000002682
rosa_multiflora	Rmu_sc0006273.1_g000017 Rmu_sc0029270.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244450
rosa_rugosa	Rorug07G0150800 Rorug07G0150900
rosa_samantha	Rh7AG287800 Rh7BG279500 Rh7CG307600 Rh7DG291100
rosa_wichuraiana	Rw7G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AciI	CCGC	5 cut(s)	45, 56, 177, 200, 323
AclWI	GGATC	2 cut(s)	199, 352
AcoI	YGGCCR	1 cut(s)	622
AcsI	RAATTY	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	234
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	4 cut(s)	258, 384, 408, 535
AfiI	CCNNNNNNNGG	2 cut(s)	164, 502
AgsI	TTSAA	3 cut(s)	75, 97, 115
AluBI	AGCT	2 cut(s)	481, 760
AluI	AGCT	2 cut(s)	481, 760
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	2 cut(s)	199, 352
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	264, 622
ApeKI	GCWGC	2 cut(s)	149, 369
ApoI	RAATTY	1 cut(s)	508
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	2 cut(s)	159, 165
AsuHPI	GGTGA	2 cut(s)	240, 517
AvaII	GGWCC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	136, 356
BccI	CCATC	2 cut(s)	41, 224
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	159, 165
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	252, 260
BfoI	RGCGCY	1 cut(s)	237
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	3 cut(s)	150, 200, 370
BlsI	GCNGC	3 cut(s)	151, 201, 371
Bme1390I	CCNGG	2 cut(s)	159, 165
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	163, 235
BmrFI	CCNGG	2 cut(s)	159, 165
BmsI	GCATC	1 cut(s)	430
BpuEI	CTTGAG	2 cut(s)	113, 746
BpuMI	CCSGG	2 cut(s)	159, 165
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	144, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 502
BseDI	CCNNGG	2 cut(s)	144, 157
BseGI	GGATG	2 cut(s)	305, 529
BseLI	CCNNNNNNNGG	2 cut(s)	164, 502
BseMII	CTCAG	1 cut(s)	531
BseRI	GAGGAG	4 cut(s)	181, 681, 716, 721
BseXI	GCAGC	2 cut(s)	136, 356
BsgI	GTGCAG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	266, 624
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	159, 165, 231
BslI	CCNNNNNNNGG	2 cut(s)	164, 502
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	266, 624
Bsp1407I	TGTACA	3 cut(s)	382, 406, 533
Bsp143I	GATC	3 cut(s)	63, 204, 344
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	5 cut(s)	45, 56, 177, 200, 323
BspANI	GGCC	2 cut(s)	266, 624
BspCNI	CTCAG	1 cut(s)	530
BspLI	GGNNCC	2 cut(s)	163, 235
BspPI	GGATC	2 cut(s)	199, 352
BspT107I	GGYRCC	1 cut(s)	233
BsrGI	TGTACA	3 cut(s)	382, 406, 533
BssECI	CCNNGG	2 cut(s)	144, 157
BssMI	GATC	3 cut(s)	63, 204, 344
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	598
Bst6I	CTCTTC	1 cut(s)	659
BstACI	GRCGYC	1 cut(s)	234
BstAUI	TGTACA	3 cut(s)	382, 406, 533
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	517, 756
BstDSI	CCRYGG	1 cut(s)	144
BstENI	CCTNNNNNAGG	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	305, 529
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	66, 207, 347
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	63, 204, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 320
BstNSI	RCATGY	2 cut(s)	534, 556
BstSCI	CCNGG	2 cut(s)	157, 163
BstV1I	GCAGC	2 cut(s)	136, 356
BsuRI	GGCC	2 cut(s)	266, 624
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	305, 529
Cac8I	GCNNGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	719
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	4 cut(s)	257, 383, 407, 534
CviAII	CATG	7 cut(s)	122, 145, 310, 394, 531, 553, 626
CviJI	RGCY	9 cut(s)	102, 149, 156, 266, 369, 481, 624, 716, 760
CviKI_1	RGCY	9 cut(s)	102, 149, 156, 266, 369, 481, 624, 716, 760
CviQI	GTAC	4 cut(s)	257, 383, 407, 534
DdeI	CTNAG	2 cut(s)	517, 756
DinI	GGCGCC	1 cut(s)	235
DpnI	GATC	3 cut(s)	65, 206, 346
DpnII	GATC	3 cut(s)	63, 204, 344
DraIII	CACNNNGTG	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	161
EcoNI	CCTNNNNNAGG	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	144
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	7 cut(s)	125, 148, 313, 397, 534, 556, 629
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FatI	CATG	7 cut(s)	121, 144, 309, 393, 530, 552, 625
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	150, 200, 370
FokI	GGATG	2 cut(s)	312, 536
Fsp4HI	GCNGC	3 cut(s)	150, 200, 370
FspBI	CTAG	2 cut(s)	252, 260
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	3 cut(s)	150, 200, 370
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	266, 624
HapII	CCGG	3 cut(s)	159, 165, 231
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	7 cut(s)	125, 148, 313, 397, 534, 556, 629
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	227, 541
HpaII	CCGG	3 cut(s)	159, 165, 231
HphI	GGTGA	2 cut(s)	240, 517
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	3 cut(s)	63, 226, 520
Hpy188III	TCNNGA	1 cut(s)	695
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	3 cut(s)	219, 280, 559
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4V	TGCA	2 cut(s)	152, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 320
HpyF3I	CTNAG	2 cut(s)	517, 756
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	7 cut(s)	125, 148, 313, 397, 534, 556, 629
HspAI	GCGC	1 cut(s)	234
KasI	GGCGCC	1 cut(s)	233
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 204, 344
LmnI	GCTCC	1 cut(s)	645
LpnPI	CCDG	4 cut(s)	172, 178, 244, 720
Lsp1109I	GCAGC	2 cut(s)	136, 356
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	252, 260
MaeIII	GTNAC	2 cut(s)	246, 356
MalI	GATC	3 cut(s)	65, 206, 346
MboI	GATC	3 cut(s)	63, 204, 344
MboII	GAAGA	3 cut(s)	165, 628, 676
MlsI	TGGCCA	1 cut(s)	624
MluCI	AATT	2 cut(s)	508, 630
MluNI	TGGCCA	1 cut(s)	624
Mly113I	GGCGCC	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	221, 550
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	624
MroXI	GAANNNNTTC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	624
MseI	TTAA	1 cut(s)	647
MslI	CAYNNNNRTG	2 cut(s)	96, 449
Msp20I	TGGCCA	1 cut(s)	624
MspI	CCGG	3 cut(s)	159, 165, 231
MspR9I	CCNGG	2 cut(s)	159, 165
MwoI	GCNNNNNNNGC	2 cut(s)	272, 320
NarI	GGCGCC	1 cut(s)	234
NciI	CCSGG	2 cut(s)	159, 165
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	63, 204, 344
NlaIII	CATG	7 cut(s)	125, 148, 313, 397, 534, 556, 629
NlaIV	GGNNCC	2 cut(s)	163, 235
NmuCI	GTSAC	1 cut(s)	246
NspI	RCATGY	2 cut(s)	534, 556
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	151, 201, 371
PleI	GAGTC	2 cut(s)	221, 549
PluTI	GGCGCC	1 cut(s)	237
PpsI	GAGTC	2 cut(s)	221, 549
PspN4I	GGNNCC	2 cut(s)	163, 235
PspPI	GGNCC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	719
RsaI	GTAC	4 cut(s)	258, 384, 408, 535
RsaNI	GTAC	4 cut(s)	257, 383, 407, 534
RseI	CAYNNNNRTG	2 cut(s)	96, 449
SaqAI	TTAA	1 cut(s)	647
SatI	GCNGC	3 cut(s)	150, 200, 370
Sau3AI	GATC	3 cut(s)	63, 204, 344
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	2 cut(s)	221, 550
ScrFI	CCNGG	2 cut(s)	159, 165
SetI	ASST	8 cut(s)	13, 253, 291, 423, 483, 498, 507, 762
SfaNI	GCATC	1 cut(s)	430
SfoI	GGCGCC	1 cut(s)	235
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	96, 449
SmlI	CTYRAG	2 cut(s)	128, 761
SmoI	CTYRAG	2 cut(s)	128, 761
Sse9I	AATT	2 cut(s)	508, 630
SsiI	CCGC	5 cut(s)	45, 56, 177, 200, 323
SspDI	GGCGCC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	252, 260
StyD4I	CCNGG	2 cut(s)	157, 163
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	598
TaqI	TCGA	3 cut(s)	498, 539, 696
TasI	AATT	2 cut(s)	508, 630
TatI	WGTACW	4 cut(s)	256, 382, 406, 533
TauI	GCSGC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	647
Tru9I	TTAA	1 cut(s)	647
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	2 cut(s)	149, 369
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	8 cut(s)	124, 298, 382, 475, 540, 547, 578, 618
VpaK11BI	GGWCC	1 cut(s)	161
XagI	CCTNNNNNAGG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	508
XceI	RCATGY	2 cut(s)	534, 556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	252, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.