Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006273.1

Orthogroup ID

OG0008652

Physical Location & Seq

Genomic Coordinates Forward (+)

84309 .. 84785

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006273.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgacattacctcgccctctgttctcaaaacccatcagcagaaccgcaccaccaccgcttctgatcacaacttcaaaacccaataatacacacttgaatggcttctctgctttcaatcctcatgctctcaagttcatcgtctccatggctgcaagccccggacccggcatttcttccgccccacagcactcctcgtcgccgctgatcccttccaccatcgcctccgactccggcacctcgcagaagtcacctagtgtactagaggccattgaggcagacttggagaaggttatatatggatgtcggttcatggcgtttatggcggttttggggtctttgattggatcgcttctgtgttacatcaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0114

Protein Analysis

123

Amino Acids

12.94

Weight (kDa)

9.39

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19390 AT4G19390
fragaria_vesca	FvH4_5g24900 FvH4_5g24900 FvH4_5g24900
prunus_persica	Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1 Prupe.5G014100_v2.0.a1
pyrus_communis	pycom06g00970
rosa_chinensis	RchiOBHm_Chr7g0215231
rosa_laevigata	RLG00000002682
rosa_multiflora	Rmu_sc0006273.1_g000017 Rmu_sc0029270.1_g000004
rosa_roxburghii	Rroxscaffold_3G00244450
rosa_rugosa	Rorug07G0150800 Rorug07G0150900
rosa_samantha	Rh7AG287800 Rh7BG279500 Rh7CG307600 Rh7DG291100
rosa_wichuraiana	Rw7G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AciI	CCGC	5 cut(s)	45, 56, 177, 200, 323
AclWI	GGATC	2 cut(s)	199, 352
AdeI	CACNNNGTG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	75, 97, 115
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	2 cut(s)	199, 352
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	2 cut(s)	159, 165
AsuHPI	GGTGA	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	41, 224
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	159, 165
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	252, 260
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	150, 200
BlsI	GCNGC	2 cut(s)	151, 201
Bme1390I	CCNGG	2 cut(s)	159, 165
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	163, 235
BmrFI	CCNGG	2 cut(s)	159, 165
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	2 cut(s)	159, 165
BsaJI	CCNNGG	2 cut(s)	144, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
BseDI	CCNNGG	2 cut(s)	144, 157
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	266
BshNI	GGYRCC	1 cut(s)	233
BsiSI	CCGG	3 cut(s)	159, 165, 231
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	63, 204, 344
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	5 cut(s)	45, 56, 177, 200, 323
BspANI	GGCC	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	163, 235
BspPI	GGATC	2 cut(s)	199, 352
BspT107I	GGYRCC	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	144, 157
BssMI	GATC	3 cut(s)	63, 204, 344
BssT1I	CCWWGG	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	154
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	305
BstKTI	GATC	3 cut(s)	66, 207, 347
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	3 cut(s)	63, 204, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 320
BstSCI	CCNGG	2 cut(s)	157, 163
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	266
BtgI	CCRYGG	1 cut(s)	144
BtgZI	GCGATG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	3 cut(s)	122, 145, 310
CviJI	RGCY	4 cut(s)	102, 149, 156, 266
CviKI_1	RGCY	4 cut(s)	102, 149, 156, 266
CviQI	GTAC	1 cut(s)	257
DpnI	GATC	3 cut(s)	65, 206, 346
DpnII	GATC	3 cut(s)	63, 204, 344
DraIII	CACNNNGTG	1 cut(s)	254
EciI	GGCGGA	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	3 cut(s)	125, 148, 313
FaiI	YATR	8 cut(s)	123, 146, 293, 295, 297, 311, 320, 370
FatI	CATG	3 cut(s)	121, 144, 309
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	150, 200
FokI	GGATG	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	150, 200
FspBI	CTAG	2 cut(s)	252, 260
GluI	GCNGC	2 cut(s)	150, 200
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	3 cut(s)	159, 165, 231
Hin1II	CATG	3 cut(s)	125, 148, 313
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	3 cut(s)	159, 165, 231
HphI	GGTGA	1 cut(s)	240
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	63, 226
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	219, 280
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 320
Hsp92II	CATG	3 cut(s)	125, 148, 313
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 204, 344
LpnPI	CCDG	3 cut(s)	172, 178, 244
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	252, 260
MaeIII	GTNAC	2 cut(s)	246, 356
MalI	GATC	3 cut(s)	65, 206, 346
MboI	GATC	3 cut(s)	63, 204, 344
MboII	GAAGA	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	8 cut(s)	21, 27, 129, 202, 232, 247, 256, 265
MroXI	GAANNNNTTC	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	3 cut(s)	159, 165, 231
MspR9I	CCNGG	2 cut(s)	159, 165
MwoI	GCNNNNNNNGC	2 cut(s)	272, 320
NciI	CCSGG	2 cut(s)	159, 165
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	63, 204, 344
NlaIII	CATG	3 cut(s)	125, 148, 313
NlaIV	GGNNCC	2 cut(s)	163, 235
NmuCI	GTSAC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	151, 201
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	163, 235
PspPI	GGNCC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	96
SatI	GCNGC	2 cut(s)	150, 200
Sau3AI	GATC	3 cut(s)	63, 204, 344
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	159, 165
SetI	ASST	5 cut(s)	13, 239, 253, 291, 369
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	5 cut(s)	45, 56, 177, 200, 323
SspMI	CTAG	2 cut(s)	252, 260
StyD4I	CCNGG	2 cut(s)	157, 163
StyI	CCWWGG	1 cut(s)	144
TatI	WGTACW	1 cut(s)	256
TauI	GCSGC	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	2 cut(s)	124, 298
VpaK11BI	GGWCC	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	252, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.